data_6AJG # _model_server_result.job_id YW3KFTufwLqCGAPF7_vCpQ _model_server_result.datetime_utc '2024-11-21 13:59:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6AJG # _exptl.entry_id 6AJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJG _cell.length_a 87.009 _cell.length_b 143.536 _cell.length_c 143.612 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H38 N2' _chem_comp.formula_weight 330.551 _chem_comp.id 3RX _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAA 3RX sing 1 n n CAA HAA 3RX sing 2 n n CAA HAAA 3RX sing 3 n n CAA HAAB 3RX sing 4 n n CAB CAR 3RX sing 5 n n CAB HAB 3RX sing 6 n n CAB HABA 3RX sing 7 n n CAB HABB 3RX sing 8 n n CAS CAC 3RX sing 9 n n CAC HAC 3RX sing 10 n n CAC HACA 3RX sing 11 n n CAC HACB 3RX sing 12 n n CAR CAD 3RX doub 13 e n CAF CAD 3RX sing 14 n n CAD HAD 3RX sing 15 n n CAE CAG 3RX sing 16 n n CAE CAS 3RX doub 17 n n CAE HAE 3RX sing 18 n n CAF CAJ 3RX sing 19 n n CAF HAF 3RX sing 20 n n CAF HAFA 3RX sing 21 n n CAG NAP 3RX sing 22 n n CAG HAG 3RX sing 23 n n CAG HAGA 3RX sing 24 n n CAH CAI 3RX sing 25 n n CAH NAP 3RX sing 26 n n CAH HAH 3RX sing 27 n n CAH HAHA 3RX sing 28 n n NAQ CAI 3RX sing 29 n n CAI HAI 3RX sing 30 n n CAI HAIA 3RX sing 31 n n CAS CAJ 3RX sing 32 n n CAJ HAJ 3RX sing 33 n n CAJ HAJA 3RX sing 34 n n CAU CAK 3RX sing 35 n n CAK CAT 3RX sing 36 n n CAK HAK 3RX sing 37 n n CAK HAKA 3RX sing 38 n n CAV CAL 3RX sing 39 n n CAT CAL 3RX sing 40 n n CAL HAL 3RX sing 41 n n CAL HALA 3RX sing 42 n n CAU CAM 3RX sing 43 n n CAM CAV 3RX sing 44 n n CAM HAM 3RX sing 45 n n CAM HAMA 3RX sing 46 n n CAW CAN 3RX sing 47 n n CAN CAT 3RX sing 48 n n CAN HAN 3RX sing 49 n n CAN HANA 3RX sing 50 n n CAO CAU 3RX sing 51 n n CAO CAW 3RX sing 52 n n CAO HAO 3RX sing 53 n n CAO HAOA 3RX sing 54 n n NAP HNAP 3RX sing 55 n n NAQ CAX 3RX sing 56 n n NAQ HNAQ 3RX sing 57 n n CAT HAT 3RX sing 58 n n CAU HAU 3RX sing 59 n n CAX CAV 3RX sing 60 n n CAV HAV 3RX sing 61 n n CAW CAX 3RX sing 62 n n CAW HAW 3RX sing 63 n n CAX HAX 3RX sing 64 n n # _atom_sites.entry_id 6AJG _atom_sites.fract_transf_matrix[1][1] 0.011493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3RX A 1 1001 1 3RX SQ9 . C 3 LMT A 1 1002 2 LMT LMT . D 3 LMT A 1 1003 3 LMT LMT . E 3 LMT A 1 1004 4 LMT LMT . F 3 LMT A 1 1005 5 LMT LMT . G 3 LMT A 1 1006 6 LMT LMT . H 3 LMT A 1 1007 7 LMT LMT . I 3 LMT A 1 1008 8 LMT LMT . J 3 LMT A 1 1009 9 LMT LMT . K 3 LMT A 1 1010 10 LMT LMT . L 4 MHA A 1 1011 11 MHA MHA . M 4 MHA A 1 1012 12 MHA MHA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3RX . . . B 2 106.234 24.93 34.628 1 84.39 ? CAA 3RX 1001 A 1 HETATM 2 C CAB 3RX . . . B 2 104.887 23.804 36.534 1 97.01 ? CAB 3RX 1001 A 1 HETATM 3 C CAC 3RX . . . B 2 100.933 20.468 35.052 1 88.5 ? CAC 3RX 1001 A 1 HETATM 4 C CAD 3RX . . . B 2 104.153 23.712 34.17 1 93.68 ? CAD 3RX 1001 A 1 HETATM 5 C CAE 3RX . . . B 2 102.111 19.967 32.938 1 90.54 ? CAE 3RX 1001 A 1 HETATM 6 C CAF 3RX . . . B 2 102.937 22.897 34.545 1 96.15 ? CAF 3RX 1001 A 1 HETATM 7 C CAG 3RX . . . B 2 100.947 19.123 32.486 1 90.58 ? CAG 3RX 1001 A 1 HETATM 8 C CAH 3RX . . . B 2 101.614 17.091 33.579 1 81.32 ? CAH 3RX 1001 A 1 HETATM 9 C CAI 3RX . . . B 2 100.899 15.75 33.532 1 86.79 ? CAI 3RX 1001 A 1 HETATM 10 C CAJ 3RX . . . B 2 103.304 21.418 34.514 1 98.18 ? CAJ 3RX 1001 A 1 HETATM 11 C CAK 3RX . . . B 2 101.102 11.541 29.76 1 92 ? CAK 3RX 1001 A 1 HETATM 12 C CAL 3RX . . . B 2 100.672 13.984 29.582 1 90.05 ? CAL 3RX 1001 A 1 HETATM 13 C CAM 3RX . . . B 2 98.917 12.479 30.483 1 85.12 ? CAM 3RX 1001 A 1 HETATM 14 C CAN 3RX . . . B 2 102.28 13.121 31.275 1 88.31 ? CAN 3RX 1001 A 1 HETATM 15 C CAO 3RX . . . B 2 100.527 11.618 32.177 1 96.26 ? CAO 3RX 1001 A 1 HETATM 16 N NAP 3RX . . . B 2 101.406 17.743 32.277 1 81.46 ? NAP 3RX 1001 A 1 HETATM 17 N NAQ 3RX . . . B 2 100.686 15.408 32.117 1 87.4 ? NAQ 3RX 1001 A 1 HETATM 18 C CAR 3RX . . . B 2 105.051 24.126 35.077 1 91.97 ? CAR 3RX 1001 A 1 HETATM 19 C CAS 3RX . . . B 2 102.106 20.589 34.124 1 92.63 ? CAS 3RX 1001 A 1 HETATM 20 C CAT 3RX . . . B 2 101.736 12.926 29.862 1 90.42 ? CAT 3RX 1001 A 1 HETATM 21 C CAU 3RX . . . B 2 99.967 11.41 30.772 1 92.69 ? CAU 3RX 1001 A 1 HETATM 22 C CAV 3RX . . . B 2 99.544 13.863 30.601 1 90.37 ? CAV 3RX 1001 A 1 HETATM 23 C CAW 3RX . . . B 2 101.144 13.007 32.287 1 92.32 ? CAW 3RX 1001 A 1 HETATM 24 C CAX 3RX . . . B 2 100.088 14.067 32.008 1 91.62 ? CAX 3RX 1001 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #