data_6AJO # _model_server_result.job_id ot2XXrvflG4YNvoKmKRt7g _model_server_result.datetime_utc '2024-11-24 04:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6AJO # _exptl.entry_id 6AJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.087 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJO _cell.length_a 36.829 _cell.length_b 64.45 _cell.length_c 82.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3 ORP 3 F ORP 9 1_555 B P DT 4 F DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 C FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A SG CYS 27 A CYS 27 1_555 C FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A SG CYS 120 A CYS 120 1_555 C FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C4 H4 N2 O2' _chem_comp.formula_weight 112.087 _chem_comp.id URA _chem_comp.mon_nstd_flag . _chem_comp.name URACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URA sing 435 n n N1 C6 URA sing 436 n n N1 HN1 URA sing 437 n n C2 O2 URA doub 438 n n C2 N3 URA sing 439 n n N3 C4 URA sing 440 n n N3 HN3 URA sing 441 n n C4 O4 URA doub 442 n n C4 C5 URA sing 443 n n C5 C6 URA doub 444 n n C5 H5 URA sing 445 n n C6 H6 URA sing 446 n n # _atom_sites.entry_id 6AJO _atom_sites.fract_transf_matrix[1][1] 0.027153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 A 1 301 210 SF4 SF4 . D 4 PO4 A 1 302 1 PO4 PO4 . E 5 URA A 1 303 7578 URA URA . F 6 HOH A 1 401 1 HOH HOH . F 6 HOH A 2 402 7 HOH HOH . F 6 HOH A 3 403 32 HOH HOH . F 6 HOH A 4 404 30 HOH HOH . F 6 HOH A 5 405 11 HOH HOH . F 6 HOH A 6 406 6 HOH HOH . F 6 HOH A 7 407 4 HOH HOH . F 6 HOH A 8 408 8 HOH HOH . F 6 HOH A 9 409 10 HOH HOH . F 6 HOH A 10 410 5 HOH HOH . F 6 HOH A 11 411 9 HOH HOH . F 6 HOH A 12 412 34 HOH HOH . G 6 HOH F 1 101 6 HOH HOH . G 6 HOH F 2 102 1 HOH HOH . G 6 HOH F 3 103 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URA . . . E 5 43.811 68.415 18.446 1 56.78 ? N1 URA 303 A 1 HETATM 2 C C2 URA . . . E 5 44.628 68.234 17.366 1 52.81 ? C2 URA 303 A 1 HETATM 3 O O2 URA . . . E 5 45.751 67.714 17.487 1 47.43 ? O2 URA 303 A 1 HETATM 4 N N3 URA . . . E 5 44.226 68.586 16.13 1 56.65 ? N3 URA 303 A 1 HETATM 5 C C4 URA . . . E 5 43.007 69.125 15.934 1 52.88 ? C4 URA 303 A 1 HETATM 6 O O4 URA . . . E 5 42.614 69.475 14.787 1 48.04 ? O4 URA 303 A 1 HETATM 7 C C5 URA . . . E 5 42.182 69.312 17.04 1 50.44 ? C5 URA 303 A 1 HETATM 8 C C6 URA . . . E 5 42.593 68.965 18.309 1 47.63 ? C6 URA 303 A 1 HETATM 9 H HN1 URA . . . E 5 44.085 68.182 19.227 1 55.07 ? HN1 URA 303 A 1 HETATM 10 H HN3 URA . . . E 5 44.747 68.455 15.459 1 55.02 ? HN3 URA 303 A 1 HETATM 11 H H5 URA . . . E 5 41.35 69.699 16.922 1 48.6 ? H5 URA 303 A 1 HETATM 12 H H6 URA . . . E 5 42.037 69.088 19.044 1 45.8 ? H6 URA 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 549 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #