data_6AJV # _model_server_result.job_id TAaZwcchUchRtbKyYPaMRg _model_server_result.datetime_utc '2024-12-02 09:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6AJV # _exptl.entry_id 6AJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',4,4'-TRIHYDROXYCHALCONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJV _cell.length_a 33.784 _cell.length_b 47.147 _cell.length_c 78.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 32 A TYR 65 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A O VAL 57 A VAL 90 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A OD1 ASN 60 A ASN 93 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 A O TYR 86 A TYR 119 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc5 A O LYS 127 A LYS 160 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 A O GLU 130 A GLU 163 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc7 B NA NA . A NA 201 1_555 G O HOH . A HOH 317 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 B NA NA . A NA 201 1_555 G O HOH . A HOH 363 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc9 E NA NA . A NA 204 1_555 G O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc10 E NA NA . A NA 204 1_555 G O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc11 E NA NA . A NA 204 1_555 G O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc12 F NA NA . A NA 205 1_555 G O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C15 H12 O4' _chem_comp.formula_weight 256.253 _chem_comp.id HCC _chem_comp.mon_nstd_flag . _chem_comp.name "2',4,4'-TRIHYDROXYCHALCONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HCC doub 138 n y C1 C6 HCC sing 139 n y C1 O19 HCC sing 140 n n C2 C3 HCC sing 141 n y C2 H2 HCC sing 142 n n C3 C4 HCC doub 143 n y C3 H3 HCC sing 144 n n C4 C5 HCC sing 145 n y C4 C7 HCC sing 146 n n C5 C6 HCC doub 147 n y C5 O10 HCC sing 148 n n C6 H6 HCC sing 149 n n C7 C8 HCC sing 150 n n C7 O17 HCC doub 151 n n C8 C9 HCC doub 152 e n C8 H8 HCC sing 153 n n C9 C11 HCC sing 154 n n C9 H9 HCC sing 155 n n O10 H10 HCC sing 156 n n C11 C12 HCC doub 157 n y C11 C16 HCC sing 158 n y C12 C13 HCC sing 159 n y C12 H12 HCC sing 160 n n C13 C14 HCC doub 161 n y C13 H13 HCC sing 162 n n C14 C15 HCC sing 163 n y C14 O18 HCC sing 164 n n C15 C16 HCC doub 165 n y C15 H15 HCC sing 166 n n C16 H16 HCC sing 167 n n O18 H18 HCC sing 168 n n O19 H19 HCC sing 169 n n # _atom_sites.entry_id 6AJV _atom_sites.fract_transf_matrix[1][1] 0.0296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 200 NA NA . C 3 HCC A 1 202 201 HCC DRG . D 4 DMS A 1 203 202 DMS DMS . E 2 NA A 1 204 198 NA NA . F 2 NA A 1 205 199 NA NA . G 5 HOH A 1 301 78 HOH HOH . G 5 HOH A 2 302 87 HOH HOH . G 5 HOH A 3 303 49 HOH HOH . G 5 HOH A 4 304 126 HOH HOH . G 5 HOH A 5 305 107 HOH HOH . G 5 HOH A 6 306 95 HOH HOH . G 5 HOH A 7 307 44 HOH HOH . G 5 HOH A 8 308 28 HOH HOH . G 5 HOH A 9 309 40 HOH HOH . G 5 HOH A 10 310 35 HOH HOH . G 5 HOH A 11 311 75 HOH HOH . G 5 HOH A 12 312 81 HOH HOH . G 5 HOH A 13 313 57 HOH HOH . G 5 HOH A 14 314 1 HOH HOH . G 5 HOH A 15 315 59 HOH HOH . G 5 HOH A 16 316 20 HOH HOH . G 5 HOH A 17 317 6 HOH HOH . G 5 HOH A 18 318 111 HOH HOH . G 5 HOH A 19 319 118 HOH HOH . G 5 HOH A 20 320 23 HOH HOH . G 5 HOH A 21 321 17 HOH HOH . G 5 HOH A 22 322 31 HOH HOH . G 5 HOH A 23 323 74 HOH HOH . G 5 HOH A 24 324 109 HOH HOH . G 5 HOH A 25 325 42 HOH HOH . G 5 HOH A 26 326 67 HOH HOH . G 5 HOH A 27 327 7 HOH HOH . G 5 HOH A 28 328 128 HOH HOH . G 5 HOH A 29 329 124 HOH HOH . G 5 HOH A 30 330 22 HOH HOH . G 5 HOH A 31 331 24 HOH HOH . G 5 HOH A 32 332 45 HOH HOH . G 5 HOH A 33 333 27 HOH HOH . G 5 HOH A 34 334 79 HOH HOH . G 5 HOH A 35 335 15 HOH HOH . G 5 HOH A 36 336 43 HOH HOH . G 5 HOH A 37 337 88 HOH HOH . G 5 HOH A 38 338 77 HOH HOH . G 5 HOH A 39 339 12 HOH HOH . G 5 HOH A 40 340 25 HOH HOH . G 5 HOH A 41 341 83 HOH HOH . G 5 HOH A 42 342 51 HOH HOH . G 5 HOH A 43 343 72 HOH HOH . G 5 HOH A 44 344 68 HOH HOH . G 5 HOH A 45 345 18 HOH HOH . G 5 HOH A 46 346 2 HOH HOH . G 5 HOH A 47 347 5 HOH HOH . G 5 HOH A 48 348 4 HOH HOH . G 5 HOH A 49 349 113 HOH HOH . G 5 HOH A 50 350 19 HOH HOH . G 5 HOH A 51 351 8 HOH HOH . G 5 HOH A 52 352 94 HOH HOH . G 5 HOH A 53 353 14 HOH HOH . G 5 HOH A 54 354 33 HOH HOH . G 5 HOH A 55 355 29 HOH HOH . G 5 HOH A 56 356 56 HOH HOH . G 5 HOH A 57 357 125 HOH HOH . G 5 HOH A 58 358 117 HOH HOH . G 5 HOH A 59 359 32 HOH HOH . G 5 HOH A 60 360 53 HOH HOH . G 5 HOH A 61 361 62 HOH HOH . G 5 HOH A 62 362 36 HOH HOH . G 5 HOH A 63 363 106 HOH HOH . G 5 HOH A 64 364 116 HOH HOH . G 5 HOH A 65 365 9 HOH HOH . G 5 HOH A 66 366 38 HOH HOH . G 5 HOH A 67 367 11 HOH HOH . G 5 HOH A 68 368 123 HOH HOH . G 5 HOH A 69 369 93 HOH HOH . G 5 HOH A 70 370 41 HOH HOH . G 5 HOH A 71 371 21 HOH HOH . G 5 HOH A 72 372 80 HOH HOH . G 5 HOH A 73 373 13 HOH HOH . G 5 HOH A 74 374 34 HOH HOH . G 5 HOH A 75 375 90 HOH HOH . G 5 HOH A 76 376 54 HOH HOH . G 5 HOH A 77 377 30 HOH HOH . G 5 HOH A 78 378 37 HOH HOH . G 5 HOH A 79 379 52 HOH HOH . G 5 HOH A 80 380 10 HOH HOH . G 5 HOH A 81 381 64 HOH HOH . G 5 HOH A 82 382 115 HOH HOH . G 5 HOH A 83 383 39 HOH HOH . G 5 HOH A 84 384 71 HOH HOH . G 5 HOH A 85 385 122 HOH HOH . G 5 HOH A 86 386 3 HOH HOH . G 5 HOH A 87 387 66 HOH HOH . G 5 HOH A 88 388 70 HOH HOH . G 5 HOH A 89 389 96 HOH HOH . G 5 HOH A 90 390 16 HOH HOH . G 5 HOH A 91 391 84 HOH HOH . G 5 HOH A 92 392 100 HOH HOH . G 5 HOH A 93 393 50 HOH HOH . G 5 HOH A 94 394 86 HOH HOH . G 5 HOH A 95 395 69 HOH HOH . G 5 HOH A 96 396 48 HOH HOH . G 5 HOH A 97 397 120 HOH HOH . G 5 HOH A 98 398 99 HOH HOH . G 5 HOH A 99 399 130 HOH HOH . G 5 HOH A 100 400 47 HOH HOH . G 5 HOH A 101 401 76 HOH HOH . G 5 HOH A 102 402 82 HOH HOH . G 5 HOH A 103 403 92 HOH HOH . G 5 HOH A 104 404 104 HOH HOH . G 5 HOH A 105 405 98 HOH HOH . G 5 HOH A 106 406 61 HOH HOH . G 5 HOH A 107 407 89 HOH HOH . G 5 HOH A 108 408 112 HOH HOH . G 5 HOH A 109 409 26 HOH HOH . G 5 HOH A 110 410 102 HOH HOH . G 5 HOH A 111 411 105 HOH HOH . G 5 HOH A 112 412 73 HOH HOH . G 5 HOH A 113 413 85 HOH HOH . G 5 HOH A 114 414 127 HOH HOH . G 5 HOH A 115 415 58 HOH HOH . G 5 HOH A 116 416 101 HOH HOH . G 5 HOH A 117 417 131 HOH HOH . G 5 HOH A 118 418 55 HOH HOH . G 5 HOH A 119 419 63 HOH HOH . G 5 HOH A 120 420 60 HOH HOH . G 5 HOH A 121 421 46 HOH HOH . G 5 HOH A 122 422 114 HOH HOH . G 5 HOH A 123 423 119 HOH HOH . G 5 HOH A 124 424 121 HOH HOH . G 5 HOH A 125 425 97 HOH HOH . G 5 HOH A 126 426 103 HOH HOH . G 5 HOH A 127 427 65 HOH HOH . G 5 HOH A 128 428 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCC . . . C 3 -5.46 8.656 3.645 1 32.41 ? C1 HCC 202 A 1 HETATM 2 C C2 HCC . . . C 3 -5.266 8.183 2.344 1 30.92 ? C2 HCC 202 A 1 HETATM 3 C C3 HCC . . . C 3 -6.348 7.784 1.558 1 28.22 ? C3 HCC 202 A 1 HETATM 4 C C4 HCC . . . C 3 -7.635 7.848 2.086 1 27.36 ? C4 HCC 202 A 1 HETATM 5 C C5 HCC . . . C 3 -7.812 8.339 3.383 1 25.63 ? C5 HCC 202 A 1 HETATM 6 C C6 HCC . . . C 3 -6.744 8.739 4.17 1 27.14 ? C6 HCC 202 A 1 HETATM 7 C C7 HCC . . . C 3 -8.751 7.496 1.331 1 28.3 ? C7 HCC 202 A 1 HETATM 8 C C8 HCC . . . C 3 -8.555 7.311 -0.171 1 23.99 ? C8 HCC 202 A 1 HETATM 9 C C9 HCC . . . C 3 -9.882 7.057 -0.888 1 24.26 ? C9 HCC 202 A 1 HETATM 10 O O10 HCC . . . C 3 -9.087 8.401 3.842 1 28.62 ? O10 HCC 202 A 1 HETATM 11 C C11 HCC . . . C 3 -9.872 6.869 -2.27 1 28.9 ? C11 HCC 202 A 1 HETATM 12 C C12 HCC . . . C 3 -11.043 7.135 -2.972 1 25.56 ? C12 HCC 202 A 1 HETATM 13 C C13 HCC . . . C 3 -11.083 6.958 -4.354 1 29.26 ? C13 HCC 202 A 1 HETATM 14 C C14 HCC . . . C 3 -9.951 6.514 -5.033 1 35.05 ? C14 HCC 202 A 1 HETATM 15 C C15 HCC . . . C 3 -8.78 6.245 -4.333 1 29.94 ? C15 HCC 202 A 1 HETATM 16 C C16 HCC . . . C 3 -8.74 6.432 -2.953 1 26.89 ? C16 HCC 202 A 1 HETATM 17 O O17 HCC . . . C 3 -9.88 7.448 1.82 1 32.01 ? O17 HCC 202 A 1 HETATM 18 O O18 HCC . . . C 3 -9.989 6.338 -6.383 1 35.28 ? O18 HCC 202 A 1 HETATM 19 O O19 HCC . . . C 3 -4.407 9.043 4.413 1 29.4 ? O19 HCC 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #