data_6AJX # _model_server_result.job_id E340GcS5lUpYWjg0I9y0Ug _model_server_result.datetime_utc '2024-12-02 07:15:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6AJX # _exptl.entry_id 6AJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',4,4'-TRIHYDROXYCHALCONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJX _cell.length_a 32.83 _cell.length_b 46.875 _cell.length_c 78.511 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 32 A TYR 65 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A O TYR 104 A TYR 137 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A O ILE 105 A ILE 138 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc4 A O ASN 107 A ASN 140 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A O LYS 127 A LYS 160 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc6 A OE1 GLU 130 A GLU 163 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 A OE2 GLU 130 A GLU 163 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc8 A O GLU 130 A GLU 163 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'C15 H12 O4' _chem_comp.formula_weight 256.253 _chem_comp.id HCC _chem_comp.mon_nstd_flag . _chem_comp.name "2',4,4'-TRIHYDROXYCHALCONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HCC doub 129 n y C1 C6 HCC sing 130 n y C1 O19 HCC sing 131 n n C2 C3 HCC sing 132 n y C2 H2 HCC sing 133 n n C3 C4 HCC doub 134 n y C3 H3 HCC sing 135 n n C4 C5 HCC sing 136 n y C4 C7 HCC sing 137 n n C5 C6 HCC doub 138 n y C5 O10 HCC sing 139 n n C6 H6 HCC sing 140 n n C7 C8 HCC sing 141 n n C7 O17 HCC doub 142 n n C8 C9 HCC doub 143 e n C8 H8 HCC sing 144 n n C9 C11 HCC sing 145 n n C9 H9 HCC sing 146 n n O10 H10 HCC sing 147 n n C11 C12 HCC doub 148 n y C11 C16 HCC sing 149 n y C12 C13 HCC sing 150 n y C12 H12 HCC sing 151 n n C13 C14 HCC doub 152 n y C13 H13 HCC sing 153 n n C14 C15 HCC sing 154 n y C14 O18 HCC sing 155 n n C15 C16 HCC doub 156 n y C15 H15 HCC sing 157 n n C16 H16 HCC sing 158 n n O18 H18 HCC sing 159 n n O19 H19 HCC sing 160 n n # _atom_sites.entry_id 6AJX _atom_sites.fract_transf_matrix[1][1] 0.03046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HCC A 1 201 999 HCC DRG . C 3 NA A 1 202 1 NA NA . D 3 NA A 1 203 1 NA NA . E 4 HOH A 1 301 14 HOH HOH . E 4 HOH A 2 302 17 HOH HOH . E 4 HOH A 3 303 38 HOH HOH . E 4 HOH A 4 304 11 HOH HOH . E 4 HOH A 5 305 28 HOH HOH . E 4 HOH A 6 306 23 HOH HOH . E 4 HOH A 7 307 22 HOH HOH . E 4 HOH A 8 308 40 HOH HOH . E 4 HOH A 9 309 8 HOH HOH . E 4 HOH A 10 310 24 HOH HOH . E 4 HOH A 11 311 2 HOH HOH . E 4 HOH A 12 312 1 HOH HOH . E 4 HOH A 13 313 26 HOH HOH . E 4 HOH A 14 314 31 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 7 HOH HOH . E 4 HOH A 17 317 6 HOH HOH . E 4 HOH A 18 318 33 HOH HOH . E 4 HOH A 19 319 9 HOH HOH . E 4 HOH A 20 320 25 HOH HOH . E 4 HOH A 21 321 16 HOH HOH . E 4 HOH A 22 322 43 HOH HOH . E 4 HOH A 23 323 20 HOH HOH . E 4 HOH A 24 324 10 HOH HOH . E 4 HOH A 25 325 18 HOH HOH . E 4 HOH A 26 326 36 HOH HOH . E 4 HOH A 27 327 35 HOH HOH . E 4 HOH A 28 328 42 HOH HOH . E 4 HOH A 29 329 3 HOH HOH . E 4 HOH A 30 330 19 HOH HOH . E 4 HOH A 31 331 5 HOH HOH . E 4 HOH A 32 332 39 HOH HOH . E 4 HOH A 33 333 27 HOH HOH . E 4 HOH A 34 334 4 HOH HOH . E 4 HOH A 35 335 30 HOH HOH . E 4 HOH A 36 336 29 HOH HOH . E 4 HOH A 37 337 34 HOH HOH . E 4 HOH A 38 338 21 HOH HOH . E 4 HOH A 39 339 12 HOH HOH . E 4 HOH A 40 340 32 HOH HOH . E 4 HOH A 41 341 37 HOH HOH . E 4 HOH A 42 342 13 HOH HOH . E 4 HOH A 43 343 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCC . . . B 2 -10.202 11.455 -3.833 1 65.55 ? C1 HCC 201 A 1 HETATM 2 C C2 HCC . . . B 2 -11.251 10.761 -3.232 1 65.95 ? C2 HCC 201 A 1 HETATM 3 C C3 HCC . . . B 2 -11.005 9.667 -2.405 1 58.48 ? C3 HCC 201 A 1 HETATM 4 C C4 HCC . . . B 2 -9.7 9.249 -2.174 1 56.13 ? C4 HCC 201 A 1 HETATM 5 C C5 HCC . . . B 2 -8.651 9.946 -2.775 1 58 ? C5 HCC 201 A 1 HETATM 6 C C6 HCC . . . B 2 -8.892 11.038 -3.603 1 63.12 ? C6 HCC 201 A 1 HETATM 7 C C7 HCC . . . B 2 -9.459 8.154 -1.341 1 51.69 ? C7 HCC 201 A 1 HETATM 8 C C8 HCC . . . B 2 -10.689 7.468 -0.728 1 43.26 ? C8 HCC 201 A 1 HETATM 9 C C9 HCC . . . B 2 -10.32 6.297 0.174 1 40.97 ? C9 HCC 201 A 1 HETATM 10 O O10 HCC . . . B 2 -7.388 9.507 -2.519 1 60.22 ? O10 HCC 201 A 1 HETATM 11 C C11 HCC . . . B 2 -11.354 5.59 0.791 1 37.71 ? C11 HCC 201 A 1 HETATM 12 C C12 HCC . . . B 2 -11.021 4.622 1.728 1 36.5 ? C12 HCC 201 A 1 HETATM 13 C C13 HCC . . . B 2 -12.009 3.876 2.382 1 39.15 ? C13 HCC 201 A 1 HETATM 14 C C14 HCC . . . B 2 -13.35 4.122 2.083 1 39.69 ? C14 HCC 201 A 1 HETATM 15 C C15 HCC . . . B 2 -13.687 5.093 1.138 1 32.12 ? C15 HCC 201 A 1 HETATM 16 C C16 HCC . . . B 2 -12.694 5.838 0.492 1 38.47 ? C16 HCC 201 A 1 HETATM 17 O O17 HCC . . . B 2 -8.321 7.752 -1.094 1 56.3 ? O17 HCC 201 A 1 HETATM 18 O O18 HCC . . . B 2 -14.333 3.426 2.729 1 33.27 ? O18 HCC 201 A 1 HETATM 19 O O19 HCC . . . B 2 -10.461 12.528 -4.638 1 63.1 ? O19 HCC 201 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1207 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 19 #