data_6AJX # _model_server_result.job_id HCsBgn5lCBl0_aQSuRVoGw _model_server_result.datetime_utc '2024-11-30 03:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6AJX # _exptl.entry_id 6AJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJX _cell.length_a 32.83 _cell.length_b 46.875 _cell.length_c 78.511 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 32 A TYR 65 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A O TYR 104 A TYR 137 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A O ILE 105 A ILE 138 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc4 A O ASN 107 A ASN 140 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A O LYS 127 A LYS 160 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc6 A OE1 GLU 130 A GLU 163 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 A OE2 GLU 130 A GLU 163 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc8 A O GLU 130 A GLU 163 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AJX _atom_sites.fract_transf_matrix[1][1] 0.03046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HCC A 1 201 999 HCC DRG . C 3 NA A 1 202 1 NA NA . D 3 NA A 1 203 1 NA NA . E 4 HOH A 1 301 14 HOH HOH . E 4 HOH A 2 302 17 HOH HOH . E 4 HOH A 3 303 38 HOH HOH . E 4 HOH A 4 304 11 HOH HOH . E 4 HOH A 5 305 28 HOH HOH . E 4 HOH A 6 306 23 HOH HOH . E 4 HOH A 7 307 22 HOH HOH . E 4 HOH A 8 308 40 HOH HOH . E 4 HOH A 9 309 8 HOH HOH . E 4 HOH A 10 310 24 HOH HOH . E 4 HOH A 11 311 2 HOH HOH . E 4 HOH A 12 312 1 HOH HOH . E 4 HOH A 13 313 26 HOH HOH . E 4 HOH A 14 314 31 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 7 HOH HOH . E 4 HOH A 17 317 6 HOH HOH . E 4 HOH A 18 318 33 HOH HOH . E 4 HOH A 19 319 9 HOH HOH . E 4 HOH A 20 320 25 HOH HOH . E 4 HOH A 21 321 16 HOH HOH . E 4 HOH A 22 322 43 HOH HOH . E 4 HOH A 23 323 20 HOH HOH . E 4 HOH A 24 324 10 HOH HOH . E 4 HOH A 25 325 18 HOH HOH . E 4 HOH A 26 326 36 HOH HOH . E 4 HOH A 27 327 35 HOH HOH . E 4 HOH A 28 328 42 HOH HOH . E 4 HOH A 29 329 3 HOH HOH . E 4 HOH A 30 330 19 HOH HOH . E 4 HOH A 31 331 5 HOH HOH . E 4 HOH A 32 332 39 HOH HOH . E 4 HOH A 33 333 27 HOH HOH . E 4 HOH A 34 334 4 HOH HOH . E 4 HOH A 35 335 30 HOH HOH . E 4 HOH A 36 336 29 HOH HOH . E 4 HOH A 37 337 34 HOH HOH . E 4 HOH A 38 338 21 HOH HOH . E 4 HOH A 39 339 12 HOH HOH . E 4 HOH A 40 340 32 HOH HOH . E 4 HOH A 41 341 37 HOH HOH . E 4 HOH A 42 342 13 HOH HOH . E 4 HOH A 43 343 41 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.886 _atom_site.Cartn_y -19.632 _atom_site.Cartn_z 5.194 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #