data_6AJZ # _model_server_result.job_id mYIeV6P2gRKVtPtXNzcHWg _model_server_result.datetime_utc '2024-10-19 03:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 6AJZ # loop_ _exptl.entry_id _exptl.method 6AJZ 'X-RAY DIFFRACTION' 6AJZ 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 399.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJZ _cell.length_a 36.763 _cell.length_b 47.101 _cell.length_c 79.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 104 A TYR 137 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc2 A O ILE 105 A ILE 138 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 A O ASN 107 A ASN 140 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A OE1 GLU 130 A GLU 163 1_555 C NA NA . A NA 201 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc5 A OE2 GLU 130 A GLU 163 1_555 C NA NA . A NA 201 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc6 C NA NA . A NA 201 1_555 D O DOD . A DOD 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C22 H25 N O6' _chem_comp.formula_weight 399.437 _chem_comp.id LOC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms COLCHICINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 LOC doub 194 n n C12 C13 LOC sing 195 n n C12 N1 LOC sing 196 n n N1 C11 LOC sing 197 n n C11 C14 LOC sing 198 n n C11 C10 LOC sing 199 n n C14 C15 LOC doub 200 n n C14 C21 LOC sing 201 n n C15 C16 LOC sing 202 n n C10 C9 LOC sing 203 n n C9 C8 LOC sing 204 n n C8 C7 LOC doub 205 n y C8 C22 LOC sing 206 n y C7 C5 LOC sing 207 n y C5 C3 LOC doub 208 n y C5 O3 LOC sing 209 n n C3 C1 LOC sing 210 n y C3 O2 LOC sing 211 n n C1 O1 LOC sing 212 n n C1 C22 LOC doub 213 n y O1 C2 LOC sing 214 n n O2 C4 LOC sing 215 n n O3 C6 LOC sing 216 n n C22 C21 LOC sing 217 n n C21 C20 LOC doub 218 n n C20 C19 LOC sing 219 n n C19 C17 LOC doub 220 n n C17 C16 LOC sing 221 n n C17 O6 LOC sing 222 n n C16 O5 LOC doub 223 n n O6 C18 LOC sing 224 n n C13 H13 LOC sing 225 n n C13 H13A LOC sing 226 n n C13 H13B LOC sing 227 n n N1 HN1 LOC sing 228 n n C11 H11 LOC sing 229 n n C15 H15 LOC sing 230 n n C10 H10 LOC sing 231 n n C10 H10A LOC sing 232 n n C9 H9 LOC sing 233 n n C9 H9A LOC sing 234 n n C7 H7 LOC sing 235 n n C2 H2 LOC sing 236 n n C2 H2A LOC sing 237 n n C2 H2B LOC sing 238 n n C4 H4 LOC sing 239 n n C4 H4A LOC sing 240 n n C4 H4B LOC sing 241 n n C6 H6 LOC sing 242 n n C6 H6A LOC sing 243 n n C6 H6B LOC sing 244 n n C20 H20 LOC sing 245 n n C19 H19 LOC sing 246 n n C18 H18 LOC sing 247 n n C18 H18A LOC sing 248 n n C18 H18B LOC sing 249 n n # _atom_sites.entry_id 6AJZ _atom_sites.fract_transf_matrix[1][1] 0.027201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LOC A 1 200 200 LOC DRG . C 3 NA A 1 201 201 NA NA . D 4 DOD A 1 301 176 DOD DOD . D 4 DOD A 2 302 171 DOD DOD . D 4 DOD A 3 303 195 DOD DOD . D 4 DOD A 4 304 157 DOD DOD . D 4 DOD A 5 305 160 DOD DOD . D 4 DOD A 6 306 164 DOD DOD . D 4 DOD A 7 307 121 DOD DOD . D 4 DOD A 8 308 137 DOD DOD . D 4 DOD A 9 309 148 DOD DOD . D 4 DOD A 10 310 145 DOD DOD . D 4 DOD A 11 311 186 DOD DOD . D 4 DOD A 12 312 118 DOD DOD . D 4 DOD A 13 313 139 DOD DOD . D 4 DOD A 14 314 144 DOD DOD . D 4 DOD A 15 315 150 DOD DOD . D 4 DOD A 16 316 125 DOD DOD . D 4 DOD A 17 317 101 DOD DOD . D 4 DOD A 18 318 138 DOD DOD . D 4 DOD A 19 319 117 DOD DOD . D 4 DOD A 20 320 103 DOD DOD . D 4 DOD A 21 321 170 DOD DOD . D 4 DOD A 22 322 140 DOD DOD . D 4 DOD A 23 323 159 DOD DOD . D 4 DOD A 24 324 136 DOD DOD . D 4 DOD A 25 325 177 DOD DOD . D 4 DOD A 26 326 112 DOD DOD . D 4 DOD A 27 327 163 DOD DOD . D 4 DOD A 28 328 197 DOD DOD . D 4 DOD A 29 329 107 DOD DOD . D 4 DOD A 30 330 143 DOD DOD . D 4 DOD A 31 331 104 DOD DOD . D 4 DOD A 32 332 128 DOD DOD . D 4 DOD A 33 333 130 DOD DOD . D 4 DOD A 34 334 122 DOD DOD . D 4 DOD A 35 335 169 DOD DOD . D 4 DOD A 36 336 120 DOD DOD . D 4 DOD A 37 337 204 DOD DOD . D 4 DOD A 38 338 155 DOD DOD . D 4 DOD A 39 339 196 DOD DOD . D 4 DOD A 40 340 190 DOD DOD . D 4 DOD A 41 341 173 DOD DOD . D 4 DOD A 42 342 110 DOD DOD . D 4 DOD A 43 343 105 DOD DOD . D 4 DOD A 44 344 189 DOD DOD . D 4 DOD A 45 345 172 DOD DOD . D 4 DOD A 46 346 124 DOD DOD . D 4 DOD A 47 347 202 DOD DOD . D 4 DOD A 48 348 180 DOD DOD . D 4 DOD A 49 349 154 DOD DOD . D 4 DOD A 50 350 182 DOD DOD . D 4 DOD A 51 351 127 DOD DOD . D 4 DOD A 52 352 210 DOD DOD . D 4 DOD A 53 353 147 DOD DOD . D 4 DOD A 54 354 102 DOD DOD . D 4 DOD A 55 355 146 DOD DOD . D 4 DOD A 56 356 178 DOD DOD . D 4 DOD A 57 357 113 DOD DOD . D 4 DOD A 58 358 126 DOD DOD . D 4 DOD A 59 359 115 DOD DOD . D 4 DOD A 60 360 152 DOD DOD . D 4 DOD A 61 361 162 DOD DOD . D 4 DOD A 62 362 183 DOD DOD . D 4 DOD A 63 363 106 DOD DOD . D 4 DOD A 64 364 142 DOD DOD . D 4 DOD A 65 365 135 DOD DOD . D 4 DOD A 66 366 131 DOD DOD . D 4 DOD A 67 367 133 DOD DOD . D 4 DOD A 68 368 174 DOD DOD . D 4 DOD A 69 369 151 DOD DOD . D 4 DOD A 70 370 116 DOD DOD . D 4 DOD A 71 371 114 DOD DOD . D 4 DOD A 72 372 184 DOD DOD . D 4 DOD A 73 373 108 DOD DOD . D 4 DOD A 74 374 129 DOD DOD . D 4 DOD A 75 375 149 DOD DOD . D 4 DOD A 76 376 134 DOD DOD . D 4 DOD A 77 377 158 DOD DOD . D 4 DOD A 78 378 206 DOD DOD . D 4 DOD A 79 379 188 DOD DOD . D 4 DOD A 80 380 141 DOD DOD . D 4 DOD A 81 381 205 DOD DOD . D 4 DOD A 82 382 109 DOD DOD . D 4 DOD A 83 383 192 DOD DOD . D 4 DOD A 84 384 193 DOD DOD . D 4 DOD A 85 385 191 DOD DOD . D 4 DOD A 86 386 185 DOD DOD . D 4 DOD A 87 387 166 DOD DOD . D 4 DOD A 88 388 123 DOD DOD . D 4 DOD A 89 389 119 DOD DOD . D 4 DOD A 90 390 187 DOD DOD . D 4 DOD A 91 391 111 DOD DOD . D 4 DOD A 92 392 167 DOD DOD . D 4 DOD A 93 393 132 DOD DOD . D 4 DOD A 94 394 194 DOD DOD . D 4 DOD A 95 395 156 DOD DOD . D 4 DOD A 96 396 199 DOD DOD . D 4 DOD A 97 397 208 DOD DOD . D 4 DOD A 98 398 175 DOD DOD . D 4 DOD A 99 399 203 DOD DOD . D 4 DOD A 100 400 198 DOD DOD . D 4 DOD A 101 401 209 DOD DOD . D 4 DOD A 102 402 153 DOD DOD . D 4 DOD A 103 403 165 DOD DOD . D 4 DOD A 104 404 168 DOD DOD . D 4 DOD A 105 405 181 DOD DOD . D 4 DOD A 106 406 201 DOD DOD . D 4 DOD A 107 407 161 DOD DOD . D 4 DOD A 108 408 200 DOD DOD . D 4 DOD A 109 409 179 DOD DOD . D 4 DOD A 110 410 207 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 LOC . . . B 2 -14.634 7.224 -5.538 1 34.88 ? O4 LOC 200 A 1 HETATM 2 C C12 LOC . . . B 2 -15.778 7.566 -5.25 1 27.33 ? C12 LOC 200 A 1 HETATM 3 C C13 LOC . . . B 2 -16.953 7.212 -6.145 1 26.81 ? C13 LOC 200 A 1 HETATM 4 N N1 LOC . . . B 2 -16.062 7.997 -4.053 1 24.5 ? N1 LOC 200 A 1 HETATM 5 C C11 LOC . . . B 2 -15.016 8.594 -3.166 1 23.21 ? C11 LOC 200 A 1 HETATM 6 C C14 LOC . . . B 2 -14.584 7.818 -2.007 1 22.38 ? C14 LOC 200 A 1 HETATM 7 C C15 LOC . . . B 2 -15.533 6.906 -1.523 1 21.49 ? C15 LOC 200 A 1 HETATM 8 C C10 LOC . . . B 2 -15.448 9.967 -2.82 1 24.85 ? C10 LOC 200 A 1 HETATM 9 C C9 LOC . . . B 2 -14.402 10.655 -1.945 1 24.85 ? C9 LOC 200 A 1 HETATM 10 C C8 LOC . . . B 2 -13.082 10.37 -2.383 1 22.07 ? C8 LOC 200 A 1 HETATM 11 C C7 LOC . . . B 2 -12.369 11.395 -3.028 1 25.12 ? C7 LOC 200 A 1 HETATM 12 C C5 LOC . . . B 2 -11.062 11.126 -3.483 1 25.01 ? C5 LOC 200 A 1 HETATM 13 C C3 LOC . . . B 2 -10.493 9.896 -3.265 1 24.8 ? C3 LOC 200 A 1 HETATM 14 C C1 LOC . . . B 2 -11.202 8.887 -2.617 1 23.59 ? C1 LOC 200 A 1 HETATM 15 O O1 LOC . . . B 2 -10.584 7.677 -2.433 1 24.42 ? O1 LOC 200 A 1 HETATM 16 C C2 LOC . . . B 2 -10.666 6.85 -3.579 1 26.89 ? C2 LOC 200 A 1 HETATM 17 O O2 LOC . . . B 2 -9.213 9.636 -3.708 1 26.11 ? O2 LOC 200 A 1 HETATM 18 C C4 LOC . . . B 2 -8.2 10.043 -2.828 1 24.74 ? C4 LOC 200 A 1 HETATM 19 O O3 LOC . . . B 2 -10.239 12.044 -4.128 1 26.69 ? O3 LOC 200 A 1 HETATM 20 C C6 LOC . . . B 2 -10.888 13.288 -4.385 1 28.18 ? C6 LOC 200 A 1 HETATM 21 C C22 LOC . . . B 2 -12.513 9.103 -2.162 1 23.03 ? C22 LOC 200 A 1 HETATM 22 C C21 LOC . . . B 2 -13.286 8.06 -1.523 1 22.63 ? C21 LOC 200 A 1 HETATM 23 C C20 LOC . . . B 2 -12.625 7.425 -0.475 1 23.31 ? C20 LOC 200 A 1 HETATM 24 C C19 LOC . . . B 2 -13.098 6.371 0.316 1 23.83 ? C19 LOC 200 A 1 HETATM 25 C C17 LOC . . . B 2 -14.339 5.707 0.339 1 22.16 ? C17 LOC 200 A 1 HETATM 26 C C16 LOC . . . B 2 -15.471 6.001 -0.449 1 22.62 ? C16 LOC 200 A 1 HETATM 27 O O5 LOC . . . B 2 -16.504 5.361 -0.153 1 23.97 ? O5 LOC 200 A 1 HETATM 28 O O6 LOC . . . B 2 -14.553 4.655 1.192 1 22.87 ? O6 LOC 200 A 1 HETATM 29 C C18 LOC . . . B 2 -13.475 4.03 1.894 1 24.08 ? C18 LOC 200 A 1 HETATM 30 H H13 LOC . . . B 2 -17.779 7.869 -5.909 1 28.95 ? H13 LOC 200 A 1 HETATM 31 H H13A LOC . . . B 2 -17.259 6.199 -5.939 1 28.76 ? H13A LOC 200 A 1 HETATM 32 H H13B LOC . . . B 2 -16.683 7.32 -7.199 1 31.59 ? H13B LOC 200 A 1 HETATM 33 D DN1 LOC . . . B 2 -16.995 7.997 -3.711 1 29.15 ? DN1 LOC 200 A 1 HETATM 34 H H11 LOC . . . B 2 -14.132 8.714 -3.797 1 25.58 ? H11 LOC 200 A 1 HETATM 35 H H15 LOC . . . B 2 -16.515 6.918 -2.018 1 18.54 ? H15 LOC 200 A 1 HETATM 36 H H10 LOC . . . B 2 -15.516 10.565 -3.67 1 24.23 ? H10 LOC 200 A 1 HETATM 37 H H10A LOC . . . B 2 -16.312 10.05 -2.223 1 24.64 ? H10A LOC 200 A 1 HETATM 38 H H9 LOC . . . B 2 -14.476 11.685 -1.893 1 26.96 ? H9 LOC 200 A 1 HETATM 39 H H9A LOC . . . B 2 -14.347 10.227 -1.015 1 25.23 ? H9A LOC 200 A 1 HETATM 40 H H7 LOC . . . B 2 -12.84 12.367 -3.188 1 29.87 ? H7 LOC 200 A 1 HETATM 41 H H2 LOC . . . B 2 -10.281 7.401 -4.431 1 24.27 ? H2 LOC 200 A 1 HETATM 42 H H2A LOC . . . B 2 -11.706 6.53 -3.774 1 30.73 ? H2A LOC 200 A 1 HETATM 43 H H2B LOC . . . B 2 -10.046 5.96 -3.44 1 25.69 ? H2B LOC 200 A 1 HETATM 44 H H4 LOC . . . B 2 -8.053 9.199 -2.133 1 28.17 ? H4 LOC 200 A 1 HETATM 45 H H4A LOC . . . B 2 -7.265 10.126 -3.29 1 29.17 ? H4A LOC 200 A 1 HETATM 46 H H4B LOC . . . B 2 -8.439 10.827 -2.175 1 26.41 ? H4B LOC 200 A 1 HETATM 47 H H6 LOC . . . B 2 -11.006 13.839 -3.465 1 25.39 ? H6 LOC 200 A 1 HETATM 48 H H6A LOC . . . B 2 -11.872 13.092 -4.812 1 33.35 ? H6A LOC 200 A 1 HETATM 49 H H6B LOC . . . B 2 -10.317 13.879 -5.095 1 25.93 ? H6B LOC 200 A 1 HETATM 50 H H20 LOC . . . B 2 -11.6 7.721 -0.296 1 26.92 ? H20 LOC 200 A 1 HETATM 51 H H19 LOC . . . B 2 -12.389 6.028 1.064 1 24.41 ? H19 LOC 200 A 1 HETATM 52 H H18 LOC . . . B 2 -13.866 3.24 2.545 1 24.1 ? H18 LOC 200 A 1 HETATM 53 H H18A LOC . . . B 2 -13.011 4.766 2.508 1 23.35 ? H18A LOC 200 A 1 HETATM 54 H H18B LOC . . . B 2 -12.742 3.623 1.202 1 24.67 ? H18B LOC 200 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 54 #