data_6AK3
#
_model_server_result.job_id            z4YMcQjs0UL6IHgL_F7H9g 
_model_server_result.datetime_utc      '2024-11-22 21:55:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ak3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    6AK3 
#
_exptl.entry_id    6AK3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.09 
_cell.angle_gamma         90 
_cell.entry_id            6AK3 
_cell.length_a            66.09 
_cell.length_b            42.28 
_cell.length_c            161.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AK3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 92 B CYS 130 1_555 A SG CYS 170 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 92 A CYS 130 1_555 B SG CYS 170 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 315 n n 
N C13 POV sing 316 n n 
N C14 POV sing 317 n n 
N C15 POV sing 318 n n 
P O11 POV sing 319 n n 
P O12 POV sing 320 n n 
P O13 POV sing 321 n n 
P O14 POV doub 322 n n 
C1 C2 POV sing 323 n n 
C1 O11 POV sing 324 n n 
C1 H1 POV sing 325 n n 
C1 H1A POV sing 326 n n 
C2 C3 POV sing 327 n n 
C2 O21 POV sing 328 n n 
C2 H2 POV sing 329 n n 
C3 O31 POV sing 330 n n 
C3 H3 POV sing 331 n n 
C3 H3A POV sing 332 n n 
C210 C211 POV sing 333 n n 
C210 C29 POV doub 334 z n 
C210 H210 POV sing 335 n n 
C310 C311 POV sing 336 n n 
C310 C39 POV sing 337 n n 
C310 H310 POV sing 338 n n 
C310 H31A POV sing 339 n n 
C11 C12 POV sing 340 n n 
C11 O12 POV sing 341 n n 
C11 H11 POV sing 342 n n 
C11 H11A POV sing 343 n n 
C211 C212 POV sing 344 n n 
C211 H211 POV sing 345 n n 
C211 H21A POV sing 346 n n 
C311 C312 POV sing 347 n n 
C311 H311 POV sing 348 n n 
C311 H31B POV sing 349 n n 
C12 H12 POV sing 350 n n 
C12 H12A POV sing 351 n n 
C212 C213 POV sing 352 n n 
C212 H212 POV sing 353 n n 
C212 H21B POV sing 354 n n 
C312 C313 POV sing 355 n n 
C312 H312 POV sing 356 n n 
C312 H31C POV sing 357 n n 
C13 H13 POV sing 358 n n 
C13 H13A POV sing 359 n n 
C13 H13B POV sing 360 n n 
C213 C214 POV sing 361 n n 
C213 H213 POV sing 362 n n 
C213 H21C POV sing 363 n n 
C313 C314 POV sing 364 n n 
C313 H313 POV sing 365 n n 
C313 H31D POV sing 366 n n 
C14 H14 POV sing 367 n n 
C14 H14A POV sing 368 n n 
C14 H14B POV sing 369 n n 
C214 C215 POV sing 370 n n 
C214 H214 POV sing 371 n n 
C214 H21D POV sing 372 n n 
C314 C315 POV sing 373 n n 
C314 H314 POV sing 374 n n 
C314 H31E POV sing 375 n n 
C15 H15 POV sing 376 n n 
C15 H15A POV sing 377 n n 
C15 H15B POV sing 378 n n 
C215 C216 POV sing 379 n n 
C215 H215 POV sing 380 n n 
C215 H21E POV sing 381 n n 
C315 C316 POV sing 382 n n 
C315 H315 POV sing 383 n n 
C315 H31F POV sing 384 n n 
C216 C217 POV sing 385 n n 
C216 H216 POV sing 386 n n 
C216 H21F POV sing 387 n n 
C316 H316 POV sing 388 n n 
C316 H31G POV sing 389 n n 
C316 H31H POV sing 390 n n 
C217 C218 POV sing 391 n n 
C217 H217 POV sing 392 n n 
C217 H21G POV sing 393 n n 
C218 H218 POV sing 394 n n 
C218 H21H POV sing 395 n n 
C218 H21J POV sing 396 n n 
C21 O21 POV sing 397 n n 
C21 C22 POV sing 398 n n 
C21 O22 POV doub 399 n n 
C22 C23 POV sing 400 n n 
C22 H22 POV sing 401 n n 
C22 H22A POV sing 402 n n 
C23 C24 POV sing 403 n n 
C23 H23 POV sing 404 n n 
C23 H23A POV sing 405 n n 
C24 C25 POV sing 406 n n 
C24 H24 POV sing 407 n n 
C24 H24A POV sing 408 n n 
C25 C26 POV sing 409 n n 
C25 H25 POV sing 410 n n 
C25 H25A POV sing 411 n n 
C26 C27 POV sing 412 n n 
C26 H26 POV sing 413 n n 
C26 H26A POV sing 414 n n 
C27 C28 POV sing 415 n n 
C27 H27 POV sing 416 n n 
C27 H27A POV sing 417 n n 
C28 C29 POV sing 418 n n 
C28 H28 POV sing 419 n n 
C28 H28A POV sing 420 n n 
C29 H29 POV sing 421 n n 
C31 O31 POV sing 422 n n 
C31 C32 POV sing 423 n n 
C31 O32 POV doub 424 n n 
C32 C33 POV sing 425 n n 
C32 H32 POV sing 426 n n 
C32 H32A POV sing 427 n n 
C33 C34 POV sing 428 n n 
C33 H33 POV sing 429 n n 
C33 H33A POV sing 430 n n 
C34 C35 POV sing 431 n n 
C34 H34 POV sing 432 n n 
C34 H34A POV sing 433 n n 
C35 C36 POV sing 434 n n 
C35 H35 POV sing 435 n n 
C35 H35A POV sing 436 n n 
C36 C37 POV sing 437 n n 
C36 H36 POV sing 438 n n 
C36 H36A POV sing 439 n n 
C37 C38 POV sing 440 n n 
C37 H37 POV sing 441 n n 
C37 H37A POV sing 442 n n 
C38 C39 POV sing 443 n n 
C38 H38 POV sing 444 n n 
C38 H38A POV sing 445 n n 
C39 H39 POV sing 446 n n 
C39 H39A POV sing 447 n n 
#
_atom_sites.entry_id                     6AK3 
_atom_sites.fract_transf_matrix[1][1]    0.015131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001614 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P2E B 1 1201 4 P2E LIG . 
D 3 POV B 1 1202 601 POV POV . 
E 2 P2E A 1 1201 5 P2E LIG . 
F 3 POV A 1 1202 501 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P POV . . . D 3 75.794 50.977 228.301 1 114.67 ? P POV 1202 B 1 
HETATM 2 C C1 POV . . . D 3 77.596 49.489 227.059 1 94.02 ? C1 POV 1202 B 1 
HETATM 3 C C2 POV . . . D 3 78.127 49.251 225.645 1 82.83 ? C2 POV 1202 B 1 
HETATM 4 C C3 POV . . . D 3 77.57 50.357 224.751 1 79.82 ? C3 POV 1202 B 1 
HETATM 5 C C210 POV . . . D 3 75.999 43.658 215.961 1 19.85 ? C210 POV 1202 B 1 
HETATM 6 C C310 POV . . . D 3 76.807 49.299 214.054 1 51.89 ? C310 POV 1202 B 1 
HETATM 7 O O11 POV . . . D 3 76.403 50.219 226.969 1 109.81 ? O11 POV 1202 B 1 
HETATM 8 C C211 POV . . . D 3 75.998 44.604 214.762 1 14.13 ? C211 POV 1202 B 1 
HETATM 9 C C311 POV . . . D 3 77.089 48.186 213.049 1 45.94 ? C311 POV 1202 B 1 
HETATM 10 O O12 POV . . . D 3 74.419 51.796 227.911 1 109.28 ? O12 POV 1202 B 1 
HETATM 11 C C212 POV . . . D 3 75.919 43.793 213.471 1 20.48 ? C212 POV 1202 B 1 
HETATM 12 C C312 POV . . . D 3 77.683 48.796 211.782 1 49.28 ? C312 POV 1202 B 1 
HETATM 13 O O13 POV . . . D 3 75.558 50.032 229.391 1 113.95 ? O13 POV 1202 B 1 
HETATM 14 C C213 POV . . . D 3 75.386 44.683 212.35 1 24.31 ? C213 POV 1202 B 1 
HETATM 15 C C313 POV . . . D 3 76.641 49.683 211.103 1 53.16 ? C313 POV 1202 B 1 
HETATM 16 O O14 POV . . . D 3 76.779 51.87 228.908 1 123.04 ? O14 POV 1202 B 1 
HETATM 17 C C214 POV . . . D 3 76.248 44.511 211.101 1 36.4 ? C214 POV 1202 B 1 
HETATM 18 C C314 POV . . . D 3 77.241 50.314 209.849 1 55.6 ? C314 POV 1202 B 1 
HETATM 19 C C215 POV . . . D 3 75.363 44.564 209.859 1 38.14 ? C215 POV 1202 B 1 
HETATM 20 C C315 POV . . . D 3 77.877 49.225 208.988 1 59.39 ? C315 POV 1202 B 1 
HETATM 21 C C216 POV . . . D 3 76.076 45.341 208.755 1 38.8 ? C216 POV 1202 B 1 
HETATM 22 C C316 POV . . . D 3 78.081 49.748 207.568 1 64.21 ? C316 POV 1202 B 1 
HETATM 23 C C217 POV . . . D 3 75.412 45.026 207.416 1 38.08 ? C217 POV 1202 B 1 
HETATM 24 C C218 POV . . . D 3 75.6 46.202 206.461 1 38.96 ? C218 POV 1202 B 1 
HETATM 25 C C21 POV . . . D 3 78.62 47.246 224.444 1 65.63 ? C21 POV 1202 B 1 
HETATM 26 O O21 POV . . . D 3 77.692 47.999 225.183 1 79.12 ? O21 POV 1202 B 1 
HETATM 27 C C22 POV . . . D 3 79.188 47.763 223.121 1 43.91 ? C22 POV 1202 B 1 
HETATM 28 O O22 POV . . . D 3 78.963 46.185 224.846 1 74.83 ? O22 POV 1202 B 1 
HETATM 29 C C23 POV . . . D 3 79.434 46.602 222.161 1 34.75 ? C23 POV 1202 B 1 
HETATM 30 C C24 POV . . . D 3 79.775 47.156 220.779 1 37.85 ? C24 POV 1202 B 1 
HETATM 31 C C25 POV . . . D 3 80.104 46.007 219.828 1 42.88 ? C25 POV 1202 B 1 
HETATM 32 C C26 POV . . . D 3 79.347 46.196 218.514 1 39.94 ? C26 POV 1202 B 1 
HETATM 33 C C27 POV . . . D 3 79.068 44.837 217.876 1 34.59 ? C27 POV 1202 B 1 
HETATM 34 C C28 POV . . . D 3 78.01 44.993 216.784 1 36.12 ? C28 POV 1202 B 1 
HETATM 35 C C29 POV . . . D 3 76.751 44.216 217.169 1 32.46 ? C29 POV 1202 B 1 
HETATM 36 C C31 POV . . . D 3 78.955 51.851 223.595 1 55.94 ? C31 POV 1202 B 1 
HETATM 37 O O31 POV . . . D 3 78.391 51.487 224.822 1 74.91 ? O31 POV 1202 B 1 
HETATM 38 C C32 POV . . . D 3 78.089 51.902 222.34 1 52.71 ? C32 POV 1202 B 1 
HETATM 39 O O32 POV . . . D 3 80.106 52.12 223.53 1 50.35 ? O32 POV 1202 B 1 
HETATM 40 C C33 POV . . . D 3 78.974 51.71 221.11 1 51.32 ? C33 POV 1202 B 1 
HETATM 41 C C34 POV . . . D 3 78.101 51.424 219.89 1 40.04 ? C34 POV 1202 B 1 
HETATM 42 C C35 POV . . . D 3 78.945 50.747 218.813 1 38.61 ? C35 POV 1202 B 1 
HETATM 43 C C36 POV . . . D 3 78.141 49.61 218.189 1 42.48 ? C36 POV 1202 B 1 
HETATM 44 C C37 POV . . . D 3 78.613 49.372 216.757 1 46.85 ? C37 POV 1202 B 1 
HETATM 45 C C38 POV . . . D 3 78.054 50.473 215.86 1 49.29 ? C38 POV 1202 B 1 
HETATM 46 C C39 POV . . . D 3 78.109 50.016 214.405 1 53.09 ? C39 POV 1202 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           46 
#