data_6AK4
#
_model_server_result.job_id            z7S2XsU220PfZuIn8vpfXA 
_model_server_result.datetime_utc      '2024-10-11 21:48:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ak4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6AK4 
#
_exptl.entry_id    6AK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              305.286 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (~{E})-2-cyano-~{N},~{N}-diethyl-3-[3-nitro-4,5-bis(oxidanyl)phenyl]prop-2-enamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6AK4 
_cell.length_a            141.77 
_cell.length_b            141.77 
_cell.length_c            83.751 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 67 A CYS 77 1_555 A SG CYS 357 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 A NE2 HIS 196 A HIS 231 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc2 A OD1 ASP 198 A ASP 233 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 A NE2 HIS 272 A HIS 307 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
#
_chem_comp.formula           'C14 H15 N3 O5' 
_chem_comp.formula_weight    305.286 
_chem_comp.id                PD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (~{E})-2-cyano-~{N},~{N}-diethyl-3-[3-nitro-4,5-bis(oxidanyl)phenyl]prop-2-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C20 PD9 sing 235 n n 
C21 C19 PD9 sing 236 n n 
C20 N18 PD9 sing 237 n n 
C19 N18 PD9 sing 238 n n 
N18 C16 PD9 sing 239 n n 
C16 O17 PD9 doub 240 n n 
C16 C13 PD9 sing 241 n n 
C13 C14 PD9 sing 242 n n 
C13 C12 PD9 doub 243 e n 
C14 N15 PD9 trip 244 n n 
C12 C11 PD9 sing 245 n n 
C10 C11 PD9 doub 246 n y 
C10 C8 PD9 sing 247 n y 
C11 C5 PD9 sing 248 n y 
O9 C8 PD9 sing 249 n n 
C8 C6 PD9 doub 250 n y 
C5 C4 PD9 doub 251 n y 
C6 C4 PD9 sing 252 n y 
C6 O7 PD9 sing 253 n n 
C4 N20 PD9 sing 254 n n 
N20 O22 PD9 sing 255 n n 
N20 O21 PD9 doub 256 n n 
C5 H1 PD9 sing 257 n n 
C10 H2 PD9 sing 258 n n 
C12 H3 PD9 sing 259 n n 
C19 H4 PD9 sing 260 n n 
C19 H5 PD9 sing 261 n n 
C20 H6 PD9 sing 262 n n 
C20 H7 PD9 sing 263 n n 
C21 H8 PD9 sing 264 n n 
C21 H9 PD9 sing 265 n n 
C21 H10 PD9 sing 266 n n 
O7 H11 PD9 sing 267 n n 
O9 H12 PD9 sing 268 n n 
C22 H13 PD9 sing 269 n n 
C22 H14 PD9 sing 270 n n 
C22 H15 PD9 sing 271 n n 
#
_atom_sites.entry_id                     6AK4 
_atom_sites.fract_transf_matrix[1][1]    0.007054 
_atom_sites.fract_transf_matrix[1][2]    0.004072 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 601 601 ZN ZN . 
C 3 PD9 A 1 602 602 PD9 PD9 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 PD9 . . . C 3 28.937 6.81 -27.229 1 111.19 ? C4 PD9 602 A 1 
HETATM 2 C C5 PD9 . . . C 3 29.915 7.28 -28.12 1 112.27 ? C5 PD9 602 A 1 
HETATM 3 C C6 PD9 . . . C 3 27.569 6.831 -27.565 1 111.64 ? C6 PD9 602 A 1 
HETATM 4 C C10 PD9 . . . C 3 28.169 7.806 -29.688 1 108.02 ? C10 PD9 602 A 1 
HETATM 5 C C11 PD9 . . . C 3 29.552 7.801 -29.36 1 111.59 ? C11 PD9 602 A 1 
HETATM 6 C C12 PD9 . . . C 3 30.597 8.248 -30.296 1 110.22 ? C12 PD9 602 A 1 
HETATM 7 C C14 PD9 . . . C 3 30.318 6.638 -31.78 1 97.81 ? C14 PD9 602 A 1 
HETATM 8 N N15 PD9 . . . C 3 29.793 5.863 -31.99 1 87.1 ? N15 PD9 602 A 1 
HETATM 9 C C16 PD9 . . . C 3 32.02 8.168 -32.44 1 109.09 ? C16 PD9 602 A 1 
HETATM 10 O O17 PD9 . . . C 3 32.607 9.198 -32.062 1 107.11 ? O17 PD9 602 A 1 
HETATM 11 C C19 PD9 . . . C 3 31.782 6.35 -34.23 1 115.64 ? C19 PD9 602 A 1 
HETATM 12 C C20 PD9 . . . C 3 33.441 8.139 -34.514 1 109.79 ? C20 PD9 602 A 1 
HETATM 13 C C21 PD9 . . . C 3 30.366 6.479 -34.782 1 116.03 ? C21 PD9 602 A 1 
HETATM 14 O O21 PD9 . . . C 3 28.719 5.219 -25.421 1 100.53 ? O21 PD9 602 A 1 
HETATM 15 N N20 PD9 . . . C 3 29.371 6.274 -25.931 1 109.36 ? N20 PD9 602 A 1 
HETATM 16 O O22 PD9 . . . C 3 30.351 6.815 -25.323 1 110.11 ? O22 PD9 602 A 1 
HETATM 17 O O7 PD9 . . . C 3 26.615 6.384 -26.74 1 118.57 ? O7 PD9 602 A 1 
HETATM 18 C C8 PD9 . . . C 3 27.209 7.349 -28.832 1 107.9 ? C8 PD9 602 A 1 
HETATM 19 O O9 PD9 . . . C 3 25.888 7.378 -29.166 1 103.4 ? O9 PD9 602 A 1 
HETATM 20 C C13 PD9 . . . C 3 30.923 7.655 -31.48 1 106.93 ? C13 PD9 602 A 1 
HETATM 21 N N18 PD9 . . . C 3 32.376 7.596 -33.648 1 113.2 ? N18 PD9 602 A 1 
HETATM 22 C C22 PD9 . . . C 3 34.548 7.112 -34.729 1 108.55 ? C22 PD9 602 A 1 
#
_model_server_stats.io_time_ms              86 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#