data_6AKK # _model_server_result.job_id 58ouT9Tbqe_upjvPUV8X-g _model_server_result.datetime_utc '2024-11-26 11:02:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6akk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6AKK # _exptl.entry_id 6AKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AKK _cell.length_a 42.797 _cell.length_b 110.871 _cell.length_c 46.438 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 42.797 0 23.219 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6AKK _atom_sites.fract_transf_matrix[1][1] 0.023366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 201 1 GOL GOL . D 3 HOH A 1 201 39 HOH HOH . D 3 HOH A 2 202 75 HOH HOH . D 3 HOH A 3 203 36 HOH HOH . D 3 HOH A 4 204 61 HOH HOH . D 3 HOH A 5 205 20 HOH HOH . D 3 HOH A 6 206 6 HOH HOH . D 3 HOH A 7 207 97 HOH HOH . D 3 HOH A 8 208 1 HOH HOH . D 3 HOH A 9 209 65 HOH HOH . D 3 HOH A 10 210 106 HOH HOH . D 3 HOH A 11 211 54 HOH HOH . D 3 HOH A 12 212 62 HOH HOH . D 3 HOH A 13 213 4 HOH HOH . D 3 HOH A 14 214 12 HOH HOH . D 3 HOH A 15 215 38 HOH HOH . D 3 HOH A 16 216 73 HOH HOH . D 3 HOH A 17 217 46 HOH HOH . D 3 HOH A 18 218 10 HOH HOH . D 3 HOH A 19 219 8 HOH HOH . D 3 HOH A 20 220 31 HOH HOH . D 3 HOH A 21 221 24 HOH HOH . D 3 HOH A 22 222 23 HOH HOH . D 3 HOH A 23 223 41 HOH HOH . D 3 HOH A 24 224 44 HOH HOH . D 3 HOH A 25 225 64 HOH HOH . D 3 HOH A 26 226 25 HOH HOH . D 3 HOH A 27 227 53 HOH HOH . D 3 HOH A 28 228 96 HOH HOH . D 3 HOH A 29 229 60 HOH HOH . D 3 HOH A 30 230 56 HOH HOH . D 3 HOH A 31 231 69 HOH HOH . D 3 HOH A 32 232 100 HOH HOH . D 3 HOH A 33 233 55 HOH HOH . D 3 HOH A 34 234 67 HOH HOH . D 3 HOH A 35 235 89 HOH HOH . D 3 HOH A 36 236 109 HOH HOH . D 3 HOH A 37 237 47 HOH HOH . D 3 HOH A 38 238 78 HOH HOH . D 3 HOH A 39 239 117 HOH HOH . D 3 HOH A 40 240 104 HOH HOH . D 3 HOH A 41 241 42 HOH HOH . D 3 HOH A 42 242 80 HOH HOH . D 3 HOH A 43 243 28 HOH HOH . D 3 HOH A 44 244 11 HOH HOH . D 3 HOH A 45 245 49 HOH HOH . D 3 HOH A 46 246 90 HOH HOH . D 3 HOH A 47 247 111 HOH HOH . D 3 HOH A 48 248 84 HOH HOH . E 3 HOH B 1 301 16 HOH HOH . E 3 HOH B 2 302 79 HOH HOH . E 3 HOH B 3 303 81 HOH HOH . E 3 HOH B 4 304 76 HOH HOH . E 3 HOH B 5 305 35 HOH HOH . E 3 HOH B 6 306 2 HOH HOH . E 3 HOH B 7 307 21 HOH HOH . E 3 HOH B 8 308 27 HOH HOH . E 3 HOH B 9 309 3 HOH HOH . E 3 HOH B 10 310 45 HOH HOH . E 3 HOH B 11 311 5 HOH HOH . E 3 HOH B 12 312 50 HOH HOH . E 3 HOH B 13 313 7 HOH HOH . E 3 HOH B 14 314 48 HOH HOH . E 3 HOH B 15 315 18 HOH HOH . E 3 HOH B 16 316 58 HOH HOH . E 3 HOH B 17 317 9 HOH HOH . E 3 HOH B 18 318 59 HOH HOH . E 3 HOH B 19 319 99 HOH HOH . E 3 HOH B 20 320 19 HOH HOH . E 3 HOH B 21 321 22 HOH HOH . E 3 HOH B 22 322 14 HOH HOH . E 3 HOH B 23 323 17 HOH HOH . E 3 HOH B 24 324 32 HOH HOH . E 3 HOH B 25 325 34 HOH HOH . E 3 HOH B 26 326 68 HOH HOH . E 3 HOH B 27 327 87 HOH HOH . E 3 HOH B 28 328 57 HOH HOH . E 3 HOH B 29 329 115 HOH HOH . E 3 HOH B 30 330 70 HOH HOH . E 3 HOH B 31 331 77 HOH HOH . E 3 HOH B 32 332 74 HOH HOH . E 3 HOH B 33 333 66 HOH HOH . E 3 HOH B 34 334 13 HOH HOH . E 3 HOH B 35 335 85 HOH HOH . E 3 HOH B 36 336 72 HOH HOH . E 3 HOH B 37 337 51 HOH HOH . E 3 HOH B 38 338 113 HOH HOH . E 3 HOH B 39 339 88 HOH HOH . E 3 HOH B 40 340 83 HOH HOH . E 3 HOH B 41 341 33 HOH HOH . E 3 HOH B 42 342 92 HOH HOH . E 3 HOH B 43 343 30 HOH HOH . E 3 HOH B 44 344 43 HOH HOH . E 3 HOH B 45 345 15 HOH HOH . E 3 HOH B 46 346 26 HOH HOH . E 3 HOH B 47 347 105 HOH HOH . E 3 HOH B 48 348 37 HOH HOH . E 3 HOH B 49 349 52 HOH HOH . E 3 HOH B 50 350 98 HOH HOH . E 3 HOH B 51 351 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 10.901 9.986 -3.056 1 69.1 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . C 2 11.985 10.818 -2.775 1 68.52 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . C 2 9.767 10.36 -2.079 1 71.65 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . C 2 9.618 9.418 -1.068 1 72.68 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . C 2 8.522 10.434 -2.973 1 74.43 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . C 2 8.431 9.196 -3.608 1 74.41 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #