data_6AKW # _model_server_result.job_id wUfh9re9EN_XCfg8TQwgdw _model_server_result.datetime_utc '2024-12-02 13:02:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6akw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6AKW # _exptl.entry_id 6AKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AKW _cell.length_a 141.388 _cell.length_b 141.388 _cell.length_c 83.608 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 42 n n C1 O2 AKG sing 43 n n C1 C2 AKG sing 44 n n O2 HO2 AKG sing 45 n n C2 O5 AKG doub 46 n n C2 C3 AKG sing 47 n n C3 C4 AKG sing 48 n n C3 H31 AKG sing 49 n n C3 H32 AKG sing 50 n n C4 C5 AKG sing 51 n n C4 H41 AKG sing 52 n n C4 H42 AKG sing 53 n n C5 O3 AKG doub 54 n n C5 O4 AKG sing 55 n n O4 HO4 AKG sing 56 n n # _atom_sites.entry_id 6AKW _atom_sites.fract_transf_matrix[1][1] 0.007073 _atom_sites.fract_transf_matrix[1][2] 0.004083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 601 1550 AKG AKG . C 3 8S3 A 1 602 1 8S3 F23 . D 4 HOH A 1 701 113 HOH HOH . D 4 HOH A 2 702 97 HOH HOH . D 4 HOH A 3 703 58 HOH HOH . D 4 HOH A 4 704 45 HOH HOH . D 4 HOH A 5 705 112 HOH HOH . D 4 HOH A 6 706 146 HOH HOH . D 4 HOH A 7 707 38 HOH HOH . D 4 HOH A 8 708 46 HOH HOH . D 4 HOH A 9 709 41 HOH HOH . D 4 HOH A 10 710 107 HOH HOH . D 4 HOH A 11 711 56 HOH HOH . D 4 HOH A 12 712 48 HOH HOH . D 4 HOH A 13 713 7 HOH HOH . D 4 HOH A 14 714 26 HOH HOH . D 4 HOH A 15 715 3 HOH HOH . D 4 HOH A 16 716 91 HOH HOH . D 4 HOH A 17 717 59 HOH HOH . D 4 HOH A 18 718 109 HOH HOH . D 4 HOH A 19 719 92 HOH HOH . D 4 HOH A 20 720 54 HOH HOH . D 4 HOH A 21 721 8 HOH HOH . D 4 HOH A 22 722 35 HOH HOH . D 4 HOH A 23 723 118 HOH HOH . D 4 HOH A 24 724 49 HOH HOH . D 4 HOH A 25 725 87 HOH HOH . D 4 HOH A 26 726 36 HOH HOH . D 4 HOH A 27 727 40 HOH HOH . D 4 HOH A 28 728 64 HOH HOH . D 4 HOH A 29 729 10 HOH HOH . D 4 HOH A 30 730 90 HOH HOH . D 4 HOH A 31 731 114 HOH HOH . D 4 HOH A 32 732 11 HOH HOH . D 4 HOH A 33 733 13 HOH HOH . D 4 HOH A 34 734 2 HOH HOH . D 4 HOH A 35 735 32 HOH HOH . D 4 HOH A 36 736 74 HOH HOH . D 4 HOH A 37 737 29 HOH HOH . D 4 HOH A 38 738 28 HOH HOH . D 4 HOH A 39 739 21 HOH HOH . D 4 HOH A 40 740 102 HOH HOH . D 4 HOH A 41 741 72 HOH HOH . D 4 HOH A 42 742 37 HOH HOH . D 4 HOH A 43 743 52 HOH HOH . D 4 HOH A 44 744 82 HOH HOH . D 4 HOH A 45 745 63 HOH HOH . D 4 HOH A 46 746 166 HOH HOH . D 4 HOH A 47 747 127 HOH HOH . D 4 HOH A 48 748 5 HOH HOH . D 4 HOH A 49 749 70 HOH HOH . D 4 HOH A 50 750 77 HOH HOH . D 4 HOH A 51 751 4 HOH HOH . D 4 HOH A 52 752 16 HOH HOH . D 4 HOH A 53 753 18 HOH HOH . D 4 HOH A 54 754 19 HOH HOH . D 4 HOH A 55 755 164 HOH HOH . D 4 HOH A 56 756 156 HOH HOH . D 4 HOH A 57 757 159 HOH HOH . D 4 HOH A 58 758 9 HOH HOH . D 4 HOH A 59 759 152 HOH HOH . D 4 HOH A 60 760 33 HOH HOH . D 4 HOH A 61 761 44 HOH HOH . D 4 HOH A 62 762 105 HOH HOH . D 4 HOH A 63 763 69 HOH HOH . D 4 HOH A 64 764 110 HOH HOH . D 4 HOH A 65 765 23 HOH HOH . D 4 HOH A 66 766 6 HOH HOH . D 4 HOH A 67 767 67 HOH HOH . D 4 HOH A 68 768 47 HOH HOH . D 4 HOH A 69 769 22 HOH HOH . D 4 HOH A 70 770 39 HOH HOH . D 4 HOH A 71 771 27 HOH HOH . D 4 HOH A 72 772 95 HOH HOH . D 4 HOH A 73 773 66 HOH HOH . D 4 HOH A 74 774 50 HOH HOH . D 4 HOH A 75 775 126 HOH HOH . D 4 HOH A 76 776 99 HOH HOH . D 4 HOH A 77 777 30 HOH HOH . D 4 HOH A 78 778 128 HOH HOH . D 4 HOH A 79 779 15 HOH HOH . D 4 HOH A 80 780 103 HOH HOH . D 4 HOH A 81 781 43 HOH HOH . D 4 HOH A 82 782 12 HOH HOH . D 4 HOH A 83 783 31 HOH HOH . D 4 HOH A 84 784 14 HOH HOH . D 4 HOH A 85 785 20 HOH HOH . D 4 HOH A 86 786 129 HOH HOH . D 4 HOH A 87 787 1 HOH HOH . D 4 HOH A 88 788 79 HOH HOH . D 4 HOH A 89 789 89 HOH HOH . D 4 HOH A 90 790 83 HOH HOH . D 4 HOH A 91 791 25 HOH HOH . D 4 HOH A 92 792 62 HOH HOH . D 4 HOH A 93 793 131 HOH HOH . D 4 HOH A 94 794 68 HOH HOH . D 4 HOH A 95 795 65 HOH HOH . D 4 HOH A 96 796 116 HOH HOH . D 4 HOH A 97 797 140 HOH HOH . D 4 HOH A 98 798 88 HOH HOH . D 4 HOH A 99 799 135 HOH HOH . D 4 HOH A 100 800 98 HOH HOH . D 4 HOH A 101 801 85 HOH HOH . D 4 HOH A 102 802 136 HOH HOH . D 4 HOH A 103 803 84 HOH HOH . D 4 HOH A 104 804 155 HOH HOH . D 4 HOH A 105 805 61 HOH HOH . D 4 HOH A 106 806 57 HOH HOH . D 4 HOH A 107 807 80 HOH HOH . D 4 HOH A 108 808 141 HOH HOH . D 4 HOH A 109 809 96 HOH HOH . D 4 HOH A 110 810 24 HOH HOH . D 4 HOH A 111 811 139 HOH HOH . D 4 HOH A 112 812 34 HOH HOH . D 4 HOH A 113 813 86 HOH HOH . D 4 HOH A 114 814 100 HOH HOH . D 4 HOH A 115 815 124 HOH HOH . D 4 HOH A 116 816 111 HOH HOH . D 4 HOH A 117 817 122 HOH HOH . D 4 HOH A 118 818 81 HOH HOH . D 4 HOH A 119 819 130 HOH HOH . D 4 HOH A 120 820 101 HOH HOH . D 4 HOH A 121 821 123 HOH HOH . D 4 HOH A 122 822 134 HOH HOH . D 4 HOH A 123 823 163 HOH HOH . D 4 HOH A 124 824 53 HOH HOH . D 4 HOH A 125 825 75 HOH HOH . D 4 HOH A 126 826 55 HOH HOH . D 4 HOH A 127 827 145 HOH HOH . D 4 HOH A 128 828 165 HOH HOH . D 4 HOH A 129 829 137 HOH HOH . D 4 HOH A 130 830 93 HOH HOH . D 4 HOH A 131 831 120 HOH HOH . D 4 HOH A 132 832 76 HOH HOH . D 4 HOH A 133 833 154 HOH HOH . D 4 HOH A 134 834 160 HOH HOH . D 4 HOH A 135 835 149 HOH HOH . D 4 HOH A 136 836 148 HOH HOH . D 4 HOH A 137 837 144 HOH HOH . D 4 HOH A 138 838 133 HOH HOH . D 4 HOH A 139 839 17 HOH HOH . D 4 HOH A 140 840 104 HOH HOH . D 4 HOH A 141 841 119 HOH HOH . D 4 HOH A 142 842 125 HOH HOH . D 4 HOH A 143 843 73 HOH HOH . D 4 HOH A 144 844 117 HOH HOH . D 4 HOH A 145 845 132 HOH HOH . D 4 HOH A 146 846 142 HOH HOH . D 4 HOH A 147 847 115 HOH HOH . D 4 HOH A 148 848 121 HOH HOH . D 4 HOH A 149 849 60 HOH HOH . D 4 HOH A 150 850 158 HOH HOH . D 4 HOH A 151 851 106 HOH HOH . D 4 HOH A 152 852 71 HOH HOH . D 4 HOH A 153 853 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . A . B 2 29.855 -6.896 -22.683 0.44 33.42 ? C1 AKG 601 A 1 HETATM 2 C C1 AKG . B . B 2 31.081 -7.869 -23.902 0.56 42.41 ? C1 AKG 601 A 1 HETATM 3 O O1 AKG . A . B 2 29.48 -8.021 -23.077 0.44 40.07 ? O1 AKG 601 A 1 HETATM 4 O O1 AKG . B . B 2 30.079 -8.475 -23.465 0.56 44.6 ? O1 AKG 601 A 1 HETATM 5 O O2 AKG . A . B 2 29.247 -6.27 -21.787 0.44 32.7 ? O2 AKG 601 A 1 HETATM 6 O O2 AKG . B . B 2 31.913 -8.417 -24.658 0.56 33.4 ? O2 AKG 601 A 1 HETATM 7 C C2 AKG . A . B 2 31.021 -6.284 -23.31 0.44 39.67 ? C2 AKG 601 A 1 HETATM 8 C C2 AKG . B . B 2 31.278 -6.472 -23.531 0.56 41.01 ? C2 AKG 601 A 1 HETATM 9 O O5 AKG . A . B 2 30.878 -5.489 -24.221 0.44 35.58 ? O5 AKG 601 A 1 HETATM 10 O O5 AKG . B . B 2 30.501 -5.613 -23.917 0.56 35.66 ? O5 AKG 601 A 1 HETATM 11 C C3 AKG . A . B 2 32.402 -6.635 -22.814 0.44 33.76 ? C3 AKG 601 A 1 HETATM 12 C C3 AKG . B . B 2 32.463 -6.104 -22.675 0.56 34.55 ? C3 AKG 601 A 1 HETATM 13 C C4 AKG . A . B 2 32.368 -6.781 -21.299 0.44 35.79 ? C4 AKG 601 A 1 HETATM 14 C C4 AKG . B . B 2 32.302 -6.772 -21.315 0.56 35.84 ? C4 AKG 601 A 1 HETATM 15 C C5 AKG . A . B 2 33.681 -7.342 -20.813 0.44 33 ? C5 AKG 601 A 1 HETATM 16 C C5 AKG . B . B 2 33.63 -7.3 -20.831 0.56 33.1 ? C5 AKG 601 A 1 HETATM 17 O O3 AKG . A . B 2 34.105 -8.398 -21.331 0.44 32.32 ? O3 AKG 601 A 1 HETATM 18 O O3 AKG . B . B 2 34.169 -8.231 -21.467 0.56 32.37 ? O3 AKG 601 A 1 HETATM 19 O O4 AKG . A . B 2 34.29 -6.732 -19.908 0.44 35.5 ? O4 AKG 601 A 1 HETATM 20 O O4 AKG . B . B 2 34.139 -6.786 -19.811 0.56 35.44 ? O4 AKG 601 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #