data_6AKX # _model_server_result.job_id HhCcUdx6ASF6hqAmJjDylQ _model_server_result.datetime_utc '2025-02-05 15:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6akx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2003}' # _entry.id 6AKX # _exptl.entry_id 6AKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.686 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-2-yl)propyl]cyclopentanecarboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AKX _cell.length_a 72.64 _cell.length_b 102.74 _cell.length_c 136.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 180 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 103 B CYS 101 1_555 B SG CYS 180 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A SG CYS 231 A CYS 1006 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A SG CYS 234 A CYS 1009 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 A SG CYS 264 A CYS 1039 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 A SG CYS 267 A CYS 1042 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 B SG CYS 231 B CYS 1006 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 B SG CYS 234 B CYS 1009 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 B SG CYS 264 B CYS 1039 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 B SG CYS 267 B CYS 1042 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C26 H39 N5 O S' _chem_comp.formula_weight 469.686 _chem_comp.id A4R _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-2-yl)propyl]cyclopentanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C31 A4R doub 1 n y C32 S33 A4R sing 2 n y C31 C30 A4R sing 3 n y C30 C29 A4R doub 4 n y S33 C29 A4R sing 5 n y C7 C6 A4R sing 6 n n C29 C20 A4R sing 7 n n C6 C8 A4R sing 8 n n C6 C5 A4R sing 9 n n C11 C12 A4R sing 10 n n C11 C10 A4R sing 11 n n C12 N17 A4R sing 12 n n C12 C13 A4R sing 13 n n C20 C19 A4R sing 14 n n C20 N21 A4R sing 15 n n C18 C19 A4R sing 16 n n C18 N17 A4R sing 17 n n C5 N4 A4R doub 18 n y C5 N9 A4R sing 19 n y N17 C15 A4R sing 20 n n N4 N3 A4R sing 21 n y N21 C22 A4R sing 22 n n C13 C14 A4R sing 23 n n N9 C10 A4R sing 24 n n N9 C2 A4R sing 25 n y C10 C16 A4R sing 26 n n N3 C2 A4R doub 27 n y C22 O23 A4R doub 28 n n C22 C24 A4R sing 29 n n C15 C16 A4R sing 30 n n C15 C14 A4R sing 31 n n C2 C1 A4R sing 32 n n C24 C28 A4R sing 33 n n C24 C25 A4R sing 34 n n C28 C27 A4R sing 35 n n C25 C26 A4R sing 36 n n C27 C26 A4R sing 37 n n C1 H1 A4R sing 38 n n C1 H2 A4R sing 39 n n C1 H3 A4R sing 40 n n C6 H4 A4R sing 41 n n C7 H5 A4R sing 42 n n C7 H6 A4R sing 43 n n C7 H7 A4R sing 44 n n C8 H8 A4R sing 45 n n C8 H9 A4R sing 46 n n C8 H10 A4R sing 47 n n C10 H11 A4R sing 48 n n C11 H12 A4R sing 49 n n C11 H13 A4R sing 50 n n C12 H14 A4R sing 51 n n C13 H15 A4R sing 52 n n C13 H16 A4R sing 53 n n C14 H17 A4R sing 54 n n C14 H18 A4R sing 55 n n C15 H19 A4R sing 56 n n C16 H20 A4R sing 57 n n C16 H21 A4R sing 58 n n C18 H23 A4R sing 59 n n C18 H24 A4R sing 60 n n C19 H25 A4R sing 61 n n C19 H26 A4R sing 62 n n C20 H27 A4R sing 63 n n N21 H28 A4R sing 64 n n C24 H29 A4R sing 65 n n C25 H30 A4R sing 66 n n C25 H31 A4R sing 67 n n C26 H32 A4R sing 68 n n C26 H33 A4R sing 69 n n C27 H34 A4R sing 70 n n C27 H35 A4R sing 71 n n C28 H36 A4R sing 72 n n C28 H37 A4R sing 73 n n C30 H38 A4R sing 74 n n C31 H39 A4R sing 75 n n C32 H40 A4R sing 76 n n # _atom_sites.entry_id 6AKX _atom_sites.fract_transf_matrix[1][1] 0.013767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2001 2001 ZN ZN . D 3 NO3 A 1 2002 1 NO3 NO3 . E 4 A4R A 1 2003 2 A4R LIG . F 2 ZN B 1 2001 2001 ZN ZN . G 3 NO3 B 1 2002 2 NO3 NO3 . H 4 A4R B 1 2003 1 A4R LIG . I 5 HOH B 1 2101 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A4R . . . E 4 28.28 -0.105 -20.09 1 20 ? C1 A4R 2003 A 1 HETATM 2 C C2 A4R . . . E 4 27.517 0.679 -21.137 1 20 ? C2 A4R 2003 A 1 HETATM 3 N N3 A4R . . . E 4 26.234 0.646 -21.338 1 20 ? N3 A4R 2003 A 1 HETATM 4 N N4 A4R . . . E 4 25.98 1.479 -22.337 1 20 ? N4 A4R 2003 A 1 HETATM 5 C C5 A4R . . . E 4 27.071 2.018 -22.734 1 20 ? C5 A4R 2003 A 1 HETATM 6 C C6 A4R . . . E 4 27.143 3.052 -23.905 1 20 ? C6 A4R 2003 A 1 HETATM 7 C C7 A4R . . . E 4 26.04 4.101 -23.776 1 20 ? C7 A4R 2003 A 1 HETATM 8 C C8 A4R . . . E 4 26.927 2.345 -25.23 1 20 ? C8 A4R 2003 A 1 HETATM 9 N N9 A4R . . . E 4 28.068 1.522 -21.969 1 20 ? N9 A4R 2003 A 1 HETATM 10 C C10 A4R . . . E 4 29.388 1.736 -21.969 1 20 ? C10 A4R 2003 A 1 HETATM 11 C C11 A4R . . . E 4 30.062 1.56 -23.397 1 20 ? C11 A4R 2003 A 1 HETATM 12 C C12 A4R . . . E 4 31.55 2.033 -23.277 1 20 ? C12 A4R 2003 A 1 HETATM 13 C C13 A4R . . . E 4 32.178 1.187 -22.178 1 20 ? C13 A4R 2003 A 1 HETATM 14 C C14 A4R . . . E 4 32.051 2.084 -20.971 1 20 ? C14 A4R 2003 A 1 HETATM 15 C C15 A4R . . . E 4 31.34 3.36 -21.592 1 20 ? C15 A4R 2003 A 1 HETATM 16 C C16 A4R . . . E 4 29.858 3.213 -21.309 1 20 ? C16 A4R 2003 A 1 HETATM 17 N N17 A4R . . . E 4 31.622 3.241 -22.837 1 20 ? N17 A4R 2003 A 1 HETATM 18 C C18 A4R . . . E 4 32.828 3.789 -23.124 1 20 ? C18 A4R 2003 A 1 HETATM 19 C C19 A4R . . . E 4 32.901 5.368 -22.887 1 20 ? C19 A4R 2003 A 1 HETATM 20 C C20 A4R . . . E 4 34.282 5.952 -23.247 1 20 ? C20 A4R 2003 A 1 HETATM 21 N N21 A4R . . . E 4 34.466 7.175 -22.515 1 20 ? N21 A4R 2003 A 1 HETATM 22 C C22 A4R . . . E 4 35.522 7.207 -21.5 1 20 ? C22 A4R 2003 A 1 HETATM 23 O O23 A4R . . . E 4 36.168 6.247 -21.331 1 20 ? O23 A4R 2003 A 1 HETATM 24 C C24 A4R . . . E 4 35.802 8.456 -20.672 1 20 ? C24 A4R 2003 A 1 HETATM 25 C C25 A4R . . . E 4 35.347 8.215 -19.115 1 20 ? C25 A4R 2003 A 1 HETATM 26 C C26 A4R . . . E 4 35.974 9.234 -18.489 1 20 ? C26 A4R 2003 A 1 HETATM 27 C C27 A4R . . . E 4 37.407 9.23 -19.146 1 20 ? C27 A4R 2003 A 1 HETATM 28 C C28 A4R . . . E 4 37.139 8.66 -20.596 1 20 ? C28 A4R 2003 A 1 HETATM 29 C C29 A4R . . . E 4 34.27 6.199 -24.734 1 20 ? C29 A4R 2003 A 1 HETATM 30 C C30 A4R . . . E 4 35.118 5.561 -25.649 1 20 ? C30 A4R 2003 A 1 HETATM 31 C C31 A4R . . . E 4 34.811 6.02 -27.05 1 20 ? C31 A4R 2003 A 1 HETATM 32 C C32 A4R . . . E 4 33.752 6.956 -27.034 1 20 ? C32 A4R 2003 A 1 HETATM 33 S S33 A4R . . . E 4 33.301 7.162 -25.543 1 20 ? S33 A4R 2003 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #