data_6AKX # _model_server_result.job_id BOGdGj5g11G8zvyKHaKYFA _model_server_result.datetime_utc '2025-02-05 14:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6akx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2003}' # _entry.id 6AKX # _exptl.entry_id 6AKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.686 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-2-yl)propyl]cyclopentanecarboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AKX _cell.length_a 72.64 _cell.length_b 102.74 _cell.length_c 136.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 180 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 103 B CYS 101 1_555 B SG CYS 180 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A SG CYS 231 A CYS 1006 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A SG CYS 234 A CYS 1009 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 A SG CYS 264 A CYS 1039 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 A SG CYS 267 A CYS 1042 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 B SG CYS 231 B CYS 1006 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 B SG CYS 234 B CYS 1009 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 B SG CYS 264 B CYS 1039 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 B SG CYS 267 B CYS 1042 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C26 H39 N5 O S' _chem_comp.formula_weight 469.686 _chem_comp.id A4R _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-2-yl)propyl]cyclopentanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C31 A4R doub 1 n y C32 S33 A4R sing 2 n y C31 C30 A4R sing 3 n y C30 C29 A4R doub 4 n y S33 C29 A4R sing 5 n y C7 C6 A4R sing 6 n n C29 C20 A4R sing 7 n n C6 C8 A4R sing 8 n n C6 C5 A4R sing 9 n n C11 C12 A4R sing 10 n n C11 C10 A4R sing 11 n n C12 N17 A4R sing 12 n n C12 C13 A4R sing 13 n n C20 C19 A4R sing 14 n n C20 N21 A4R sing 15 n n C18 C19 A4R sing 16 n n C18 N17 A4R sing 17 n n C5 N4 A4R doub 18 n y C5 N9 A4R sing 19 n y N17 C15 A4R sing 20 n n N4 N3 A4R sing 21 n y N21 C22 A4R sing 22 n n C13 C14 A4R sing 23 n n N9 C10 A4R sing 24 n n N9 C2 A4R sing 25 n y C10 C16 A4R sing 26 n n N3 C2 A4R doub 27 n y C22 O23 A4R doub 28 n n C22 C24 A4R sing 29 n n C15 C16 A4R sing 30 n n C15 C14 A4R sing 31 n n C2 C1 A4R sing 32 n n C24 C28 A4R sing 33 n n C24 C25 A4R sing 34 n n C28 C27 A4R sing 35 n n C25 C26 A4R sing 36 n n C27 C26 A4R sing 37 n n C1 H1 A4R sing 38 n n C1 H2 A4R sing 39 n n C1 H3 A4R sing 40 n n C6 H4 A4R sing 41 n n C7 H5 A4R sing 42 n n C7 H6 A4R sing 43 n n C7 H7 A4R sing 44 n n C8 H8 A4R sing 45 n n C8 H9 A4R sing 46 n n C8 H10 A4R sing 47 n n C10 H11 A4R sing 48 n n C11 H12 A4R sing 49 n n C11 H13 A4R sing 50 n n C12 H14 A4R sing 51 n n C13 H15 A4R sing 52 n n C13 H16 A4R sing 53 n n C14 H17 A4R sing 54 n n C14 H18 A4R sing 55 n n C15 H19 A4R sing 56 n n C16 H20 A4R sing 57 n n C16 H21 A4R sing 58 n n C18 H23 A4R sing 59 n n C18 H24 A4R sing 60 n n C19 H25 A4R sing 61 n n C19 H26 A4R sing 62 n n C20 H27 A4R sing 63 n n N21 H28 A4R sing 64 n n C24 H29 A4R sing 65 n n C25 H30 A4R sing 66 n n C25 H31 A4R sing 67 n n C26 H32 A4R sing 68 n n C26 H33 A4R sing 69 n n C27 H34 A4R sing 70 n n C27 H35 A4R sing 71 n n C28 H36 A4R sing 72 n n C28 H37 A4R sing 73 n n C30 H38 A4R sing 74 n n C31 H39 A4R sing 75 n n C32 H40 A4R sing 76 n n # _atom_sites.entry_id 6AKX _atom_sites.fract_transf_matrix[1][1] 0.013767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2001 2001 ZN ZN . D 3 NO3 A 1 2002 1 NO3 NO3 . E 4 A4R A 1 2003 2 A4R LIG . F 2 ZN B 1 2001 2001 ZN ZN . G 3 NO3 B 1 2002 2 NO3 NO3 . H 4 A4R B 1 2003 1 A4R LIG . I 5 HOH B 1 2101 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A4R . . . H 4 -7.65 3.041 -20.363 1 47.55 ? C1 A4R 2003 B 1 HETATM 2 C C2 A4R . . . H 4 -8.341 3.824 -21.461 1 50.1 ? C2 A4R 2003 B 1 HETATM 3 N N3 A4R . . . H 4 -9.617 3.855 -21.703 1 51.59 ? N3 A4R 2003 B 1 HETATM 4 N N4 A4R . . . H 4 -9.83 4.657 -22.741 1 50.11 ? N4 A4R 2003 B 1 HETATM 5 C C5 A4R . . . H 4 -8.701 5.111 -23.128 1 49.12 ? C5 A4R 2003 B 1 HETATM 6 C C6 A4R . . . H 4 -8.549 6.084 -24.342 1 46.82 ? C6 A4R 2003 B 1 HETATM 7 C C7 A4R . . . H 4 -9.397 7.336 -24.153 1 42.84 ? C7 A4R 2003 B 1 HETATM 8 C C8 A4R . . . H 4 -9.033 5.383 -25.601 1 49.56 ? C8 A4R 2003 B 1 HETATM 9 N N9 A4R . . . H 4 -7.74 4.588 -22.33 1 49.99 ? N9 A4R 2003 B 1 HETATM 10 C C10 A4R . . . H 4 -6.405 4.749 -22.318 1 48.72 ? C10 A4R 2003 B 1 HETATM 11 C C11 A4R . . . H 4 -5.664 4.49 -23.705 1 46.55 ? C11 A4R 2003 B 1 HETATM 12 C C12 A4R . . . H 4 -4.203 5.037 -23.589 1 46.96 ? C12 A4R 2003 B 1 HETATM 13 C C13 A4R . . . H 4 -3.567 4.236 -22.484 1 46.14 ? C13 A4R 2003 B 1 HETATM 14 C C14 A4R . . . H 4 -3.782 5.094 -21.265 1 47.46 ? C14 A4R 2003 B 1 HETATM 15 C C15 A4R . . . H 4 -4.459 6.373 -21.923 1 47.28 ? C15 A4R 2003 B 1 HETATM 16 C C16 A4R . . . H 4 -5.951 6.268 -21.745 1 47.27 ? C16 A4R 2003 B 1 HETATM 17 N N17 A4R . . . H 4 -4.119 6.239 -23.14 1 47.48 ? N17 A4R 2003 B 1 HETATM 18 C C18 A4R . . . H 4 -2.876 6.726 -23.241 1 46.94 ? C18 A4R 2003 B 1 HETATM 19 C C19 A4R . . . H 4 -2.903 8.326 -23.184 1 45.8 ? C19 A4R 2003 B 1 HETATM 20 C C20 A4R . . . H 4 -1.564 8.959 -23.612 1 48.42 ? C20 A4R 2003 B 1 HETATM 21 N N21 A4R . . . H 4 -1.289 10.147 -22.86 1 49.38 ? N21 A4R 2003 B 1 HETATM 22 C C22 A4R . . . H 4 -0.211 10.128 -21.876 1 54.06 ? C22 A4R 2003 B 1 HETATM 23 O O23 A4R . . . H 4 0.362 9.135 -21.73 1 57.54 ? O23 A4R 2003 B 1 HETATM 24 C C24 A4R . . . H 4 0.176 11.337 -21.034 1 56.68 ? C24 A4R 2003 B 1 HETATM 25 C C25 A4R . . . H 4 -0.263 11.158 -19.46 1 56.58 ? C25 A4R 2003 B 1 HETATM 26 C C26 A4R . . . H 4 0.354 12.193 -18.857 1 56.93 ? C26 A4R 2003 B 1 HETATM 27 C C27 A4R . . . H 4 1.755 12.221 -19.582 1 57.92 ? C27 A4R 2003 B 1 HETATM 28 C C28 A4R . . . H 4 1.523 11.428 -20.934 1 57.74 ? C28 A4R 2003 B 1 HETATM 29 C C29 A4R . . . H 4 -1.63 9.386 -25.056 1 53.84 ? C29 A4R 2003 B 1 HETATM 30 C C30 A4R . . . H 4 -0.695 9.033 -26.047 1 54.29 ? C30 A4R 2003 B 1 HETATM 31 C C31 A4R . . . H 4 -1.075 9.64 -27.375 1 56.71 ? C31 A4R 2003 B 1 HETATM 32 C C32 A4R . . . H 4 -2.262 10.406 -27.232 1 59.66 ? C32 A4R 2003 B 1 HETATM 33 S S33 A4R . . . H 4 -2.739 10.315 -25.727 1 59.64 ? S33 A4R 2003 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #