data_6AKY # _model_server_result.job_id CyacUp3Ki8ckADBGtdgqng _model_server_result.datetime_utc '2025-02-05 08:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 6AKY # _exptl.entry_id 6AKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,4-difluoro-N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-3-yl)propyl]cyclohexane-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AKY _cell.length_a 35.585 _cell.length_b 101.483 _cell.length_c 136.569 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 20 1_555 A SG CYS 322 A CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 103 A CYS 101 1_555 A SG CYS 180 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A SG CYS 231 A CYS 1006 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A SG CYS 234 A CYS 1009 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc3 A SG CYS 264 A CYS 1039 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 A SG CYS 267 A CYS 1042 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C27 H39 F2 N5 O S' _chem_comp.formula_weight 519.693 _chem_comp.id A4X _chem_comp.mon_nstd_flag . _chem_comp.name 4,4-difluoro-N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-3-yl)propyl]cyclohexane-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C11 A4X sing 1 n n C4 N1 A4X sing 2 n y C4 N3 A4X doub 3 n y C14 C7 A4X sing 4 n n C5 C2 A4X sing 5 n n C5 C1 A4X sing 6 n n C6 C3 A4X sing 7 n n C6 C1 A4X sing 8 n n C11 C20 A4X sing 9 n n C11 C19 A4X sing 10 n n C7 N1 A4X sing 11 n y C7 N4 A4X doub 12 n y C8 C9 A4X sing 13 n n C8 C2 A4X sing 14 n n C9 C3 A4X sing 15 n n C10 C12 A4X sing 16 n n C10 N2 A4X sing 17 n n C12 C13 A4X sing 18 n n C13 N5 A4X sing 19 n n C13 C15 A4X sing 20 n n N1 C1 A4X sing 21 n n N2 C3 A4X sing 22 n n N2 C2 A4X sing 23 n n N3 N4 A4X sing 24 n y C21 C23 A4X sing 25 n n C21 C17 A4X sing 26 n n C23 C18 A4X sing 27 n n C18 F1 A4X sing 28 n n C18 F2 A4X sing 29 n n C18 C24 A4X sing 30 n n C24 C22 A4X sing 31 n n C22 C17 A4X sing 32 n n C17 C16 A4X sing 33 n n C16 O1 A4X doub 34 n n C16 N5 A4X sing 35 n n C15 C25 A4X sing 36 n y C15 C26 A4X doub 37 n y C25 C27 A4X doub 38 n y C27 S1 A4X sing 39 n y S1 C26 A4X sing 40 n y C14 H1 A4X sing 41 n n C14 H2 A4X sing 42 n n C14 H3 A4X sing 43 n n C5 H4 A4X sing 44 n n C5 H5 A4X sing 45 n n C6 H6 A4X sing 46 n n C6 H7 A4X sing 47 n n C11 H8 A4X sing 48 n n C8 H9 A4X sing 49 n n C8 H10 A4X sing 50 n n C9 H11 A4X sing 51 n n C9 H12 A4X sing 52 n n C10 H13 A4X sing 53 n n C10 H14 A4X sing 54 n n C12 H15 A4X sing 55 n n C12 H16 A4X sing 56 n n C13 H17 A4X sing 57 n n C3 H19 A4X sing 58 n n C21 H20 A4X sing 59 n n C21 H21 A4X sing 60 n n C23 H22 A4X sing 61 n n C23 H23 A4X sing 62 n n C24 H24 A4X sing 63 n n C24 H25 A4X sing 64 n n C22 H26 A4X sing 65 n n C22 H27 A4X sing 66 n n C17 H28 A4X sing 67 n n N5 H29 A4X sing 68 n n C25 H30 A4X sing 69 n n C27 H31 A4X sing 70 n n C26 H33 A4X sing 71 n n C2 H35 A4X sing 72 n n C1 H36 A4X sing 73 n n C20 H37 A4X sing 74 n n C20 H38 A4X sing 75 n n C20 H39 A4X sing 76 n n C19 H40 A4X sing 77 n n C19 H41 A4X sing 78 n n C19 H42 A4X sing 79 n n # _atom_sites.entry_id 6AKY _atom_sites.fract_transf_matrix[1][1] 0.028102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 2001 2001 ZN ZN . C 3 OLC A 1 2002 1 OLC OLC . D 4 A4X A 1 2003 800 A4X DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A4X . . . D 4 -8.778 22.804 22.891 1 57.74 ? C4 A4X 2003 A 1 HETATM 2 C C14 A4X . . . D 4 -7.859 24.995 20.209 1 58.52 ? C14 A4X 2003 A 1 HETATM 3 C C5 A4X . . . D 4 -5.722 22.043 21.31 1 54.9 ? C5 A4X 2003 A 1 HETATM 4 C C6 A4X . . . D 4 -5.588 23.288 23.664 1 58.72 ? C6 A4X 2003 A 1 HETATM 5 C C11 A4X . . . D 4 -8.683 21.824 24.067 1 56.27 ? C11 A4X 2003 A 1 HETATM 6 C C7 A4X . . . D 4 -8.438 24.1 21.314 1 58.96 ? C7 A4X 2003 A 1 HETATM 7 C C8 A4X . . . D 4 -3.31 22.918 21.404 1 60.51 ? C8 A4X 2003 A 1 HETATM 8 C C9 A4X . . . D 4 -3.188 23.573 22.804 1 60.32 ? C9 A4X 2003 A 1 HETATM 9 C C10 A4X . . . D 4 -2.872 20.582 23.399 1 55.73 ? C10 A4X 2003 A 1 HETATM 10 C C12 A4X . . . D 4 -2.909 19.173 22.82 1 54.5 ? C12 A4X 2003 A 1 HETATM 11 C C13 A4X . . . D 4 -1.768 18.399 23.462 1 59.99 ? C13 A4X 2003 A 1 HETATM 12 N N1 A4X . . . D 4 -7.777 23.334 22.182 1 58.69 ? N1 A4X 2003 A 1 HETATM 13 N N2 A4X . . . D 4 -4.072 21.382 23.045 1 59.26 ? N2 A4X 2003 A 1 HETATM 14 C C3 A4X . . . D 4 -4.116 22.722 23.678 1 59.98 ? C3 A4X 2003 A 1 HETATM 15 N N3 A4X . . . D 4 -9.931 23.275 22.425 1 58.78 ? N3 A4X 2003 A 1 HETATM 16 C C21 A4X . . . D 4 -1.067 16.189 19.59 1 67.28 ? C21 A4X 2003 A 1 HETATM 17 C C23 A4X . . . D 4 -0.941 14.948 18.687 1 68.09 ? C23 A4X 2003 A 1 HETATM 18 C C18 A4X . . . D 4 0.541 14.612 18.409 1 69.58 ? C18 A4X 2003 A 1 HETATM 19 F F1 A4X . . . D 4 1.108 15.621 17.646 1 72.5 ? F1 A4X 2003 A 1 HETATM 20 F F2 A4X . . . D 4 0.579 13.466 17.71 1 69.26 ? F2 A4X 2003 A 1 HETATM 21 C C24 A4X . . . D 4 1.327 14.409 19.733 1 68.2 ? C24 A4X 2003 A 1 HETATM 22 C C22 A4X . . . D 4 1.212 15.652 20.64 1 67.25 ? C22 A4X 2003 A 1 HETATM 23 C C17 A4X . . . D 4 -0.273 16.007 20.905 1 67.56 ? C17 A4X 2003 A 1 HETATM 24 C C16 A4X . . . D 4 -0.399 17.296 21.722 1 68.01 ? C16 A4X 2003 A 1 HETATM 25 O O1 A4X . . . D 4 0.331 18.272 21.502 1 71.15 ? O1 A4X 2003 A 1 HETATM 26 N N5 A4X . . . D 4 -1.404 17.263 22.615 1 63.76 ? N5 A4X 2003 A 1 HETATM 27 C C15 A4X . . . D 4 -2.102 17.962 24.899 1 61.88 ? C15 A4X 2003 A 1 HETATM 28 C C25 A4X . . . D 4 -1.151 17.933 25.847 1 61.15 ? C25 A4X 2003 A 1 HETATM 29 C C27 A4X . . . D 4 -1.585 17.578 27.052 1 63.79 ? C27 A4X 2003 A 1 HETATM 30 S S1 A4X . . . D 4 -3.222 17.297 26.874 1 67.37 ? S1 A4X 2003 A 1 HETATM 31 C C26 A4X . . . D 4 -3.339 17.63 25.294 1 64.08 ? C26 A4X 2003 A 1 HETATM 32 C C2 A4X . . . D 4 -4.242 21.706 21.609 1 57.59 ? C2 A4X 2003 A 1 HETATM 33 C C1 A4X . . . D 4 -6.264 23.175 22.235 1 57.18 ? C1 A4X 2003 A 1 HETATM 34 N N4 A4X . . . D 4 -9.74 24.002 21.547 1 60.26 ? N4 A4X 2003 A 1 HETATM 35 C C20 A4X . . . D 4 -8.983 22.542 25.39 1 55.41 ? C20 A4X 2003 A 1 HETATM 36 C C19 A4X . . . D 4 -9.643 20.654 23.852 1 56.98 ? C19 A4X 2003 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #