data_6ALN # _model_server_result.job_id DGP9RJI579fSzMgifHygSg _model_server_result.datetime_utc '2024-11-25 08:51:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6ALN # _exptl.entry_id 6ALN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.21 _cell.angle_gamma 90 _cell.entry_id 6ALN _cell.length_a 80.76 _cell.length_b 66.653 _cell.length_c 62.889 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ALN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 204 A HIS 168 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A OE1 GLU 206 A GLU 170 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 A NE2 HIS 352 A HIS 316 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc4 B O1 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 B O5 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 C FE FE2 . A FE2 402 1_555 D OB ZZU . A ZZU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 6ALN _atom_sites.fract_transf_matrix[1][1] 0.012382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004314 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 401 1 AKG AKG . C 3 FE2 A 1 402 1 FE2 FE2 . D 4 ZZU A 1 403 1 ZZU HAR . E 5 HOH A 1 501 176 HOH HOH . E 5 HOH A 2 502 61 HOH HOH . E 5 HOH A 3 503 151 HOH HOH . E 5 HOH A 4 504 60 HOH HOH . E 5 HOH A 5 505 4 HOH HOH . E 5 HOH A 6 506 172 HOH HOH . E 5 HOH A 7 507 215 HOH HOH . E 5 HOH A 8 508 140 HOH HOH . E 5 HOH A 9 509 52 HOH HOH . E 5 HOH A 10 510 116 HOH HOH . E 5 HOH A 11 511 9 HOH HOH . E 5 HOH A 12 512 141 HOH HOH . E 5 HOH A 13 513 26 HOH HOH . E 5 HOH A 14 514 122 HOH HOH . E 5 HOH A 15 515 71 HOH HOH . E 5 HOH A 16 516 69 HOH HOH . E 5 HOH A 17 517 30 HOH HOH . E 5 HOH A 18 518 19 HOH HOH . E 5 HOH A 19 519 145 HOH HOH . E 5 HOH A 20 520 2 HOH HOH . E 5 HOH A 21 521 95 HOH HOH . E 5 HOH A 22 522 7 HOH HOH . E 5 HOH A 23 523 180 HOH HOH . E 5 HOH A 24 524 25 HOH HOH . E 5 HOH A 25 525 84 HOH HOH . E 5 HOH A 26 526 14 HOH HOH . E 5 HOH A 27 527 109 HOH HOH . E 5 HOH A 28 528 138 HOH HOH . E 5 HOH A 29 529 55 HOH HOH . E 5 HOH A 30 530 48 HOH HOH . E 5 HOH A 31 531 199 HOH HOH . E 5 HOH A 32 532 12 HOH HOH . E 5 HOH A 33 533 167 HOH HOH . E 5 HOH A 34 534 132 HOH HOH . E 5 HOH A 35 535 47 HOH HOH . E 5 HOH A 36 536 3 HOH HOH . E 5 HOH A 37 537 78 HOH HOH . E 5 HOH A 38 538 149 HOH HOH . E 5 HOH A 39 539 153 HOH HOH . E 5 HOH A 40 540 184 HOH HOH . E 5 HOH A 41 541 178 HOH HOH . E 5 HOH A 42 542 193 HOH HOH . E 5 HOH A 43 543 81 HOH HOH . E 5 HOH A 44 544 1 HOH HOH . E 5 HOH A 45 545 34 HOH HOH . E 5 HOH A 46 546 107 HOH HOH . E 5 HOH A 47 547 131 HOH HOH . E 5 HOH A 48 548 106 HOH HOH . E 5 HOH A 49 549 119 HOH HOH . E 5 HOH A 50 550 41 HOH HOH . E 5 HOH A 51 551 16 HOH HOH . E 5 HOH A 52 552 113 HOH HOH . E 5 HOH A 53 553 54 HOH HOH . E 5 HOH A 54 554 45 HOH HOH . E 5 HOH A 55 555 207 HOH HOH . E 5 HOH A 56 556 150 HOH HOH . E 5 HOH A 57 557 15 HOH HOH . E 5 HOH A 58 558 11 HOH HOH . E 5 HOH A 59 559 28 HOH HOH . E 5 HOH A 60 560 203 HOH HOH . E 5 HOH A 61 561 164 HOH HOH . E 5 HOH A 62 562 92 HOH HOH . E 5 HOH A 63 563 136 HOH HOH . E 5 HOH A 64 564 8 HOH HOH . E 5 HOH A 65 565 21 HOH HOH . E 5 HOH A 66 566 121 HOH HOH . E 5 HOH A 67 567 65 HOH HOH . E 5 HOH A 68 568 111 HOH HOH . E 5 HOH A 69 569 166 HOH HOH . E 5 HOH A 70 570 23 HOH HOH . E 5 HOH A 71 571 94 HOH HOH . E 5 HOH A 72 572 209 HOH HOH . E 5 HOH A 73 573 135 HOH HOH . E 5 HOH A 74 574 56 HOH HOH . E 5 HOH A 75 575 183 HOH HOH . E 5 HOH A 76 576 187 HOH HOH . E 5 HOH A 77 577 40 HOH HOH . E 5 HOH A 78 578 20 HOH HOH . E 5 HOH A 79 579 163 HOH HOH . E 5 HOH A 80 580 186 HOH HOH . E 5 HOH A 81 581 110 HOH HOH . E 5 HOH A 82 582 76 HOH HOH . E 5 HOH A 83 583 162 HOH HOH . E 5 HOH A 84 584 39 HOH HOH . E 5 HOH A 85 585 53 HOH HOH . E 5 HOH A 86 586 90 HOH HOH . E 5 HOH A 87 587 123 HOH HOH . E 5 HOH A 88 588 5 HOH HOH . E 5 HOH A 89 589 197 HOH HOH . E 5 HOH A 90 590 99 HOH HOH . E 5 HOH A 91 591 80 HOH HOH . E 5 HOH A 92 592 27 HOH HOH . E 5 HOH A 93 593 157 HOH HOH . E 5 HOH A 94 594 146 HOH HOH . E 5 HOH A 95 595 32 HOH HOH . E 5 HOH A 96 596 66 HOH HOH . E 5 HOH A 97 597 18 HOH HOH . E 5 HOH A 98 598 13 HOH HOH . E 5 HOH A 99 599 29 HOH HOH . E 5 HOH A 100 600 74 HOH HOH . E 5 HOH A 101 601 50 HOH HOH . E 5 HOH A 102 602 72 HOH HOH . E 5 HOH A 103 603 49 HOH HOH . E 5 HOH A 104 604 210 HOH HOH . E 5 HOH A 105 605 79 HOH HOH . E 5 HOH A 106 606 208 HOH HOH . E 5 HOH A 107 607 195 HOH HOH . E 5 HOH A 108 608 36 HOH HOH . E 5 HOH A 109 609 44 HOH HOH . E 5 HOH A 110 610 142 HOH HOH . E 5 HOH A 111 611 179 HOH HOH . E 5 HOH A 112 612 130 HOH HOH . E 5 HOH A 113 613 137 HOH HOH . E 5 HOH A 114 614 38 HOH HOH . E 5 HOH A 115 615 91 HOH HOH . E 5 HOH A 116 616 33 HOH HOH . E 5 HOH A 117 617 212 HOH HOH . E 5 HOH A 118 618 35 HOH HOH . E 5 HOH A 119 619 170 HOH HOH . E 5 HOH A 120 620 144 HOH HOH . E 5 HOH A 121 621 161 HOH HOH . E 5 HOH A 122 622 191 HOH HOH . E 5 HOH A 123 623 125 HOH HOH . E 5 HOH A 124 624 160 HOH HOH . E 5 HOH A 125 625 108 HOH HOH . E 5 HOH A 126 626 46 HOH HOH . E 5 HOH A 127 627 200 HOH HOH . E 5 HOH A 128 628 133 HOH HOH . E 5 HOH A 129 629 43 HOH HOH . E 5 HOH A 130 630 129 HOH HOH . E 5 HOH A 131 631 58 HOH HOH . E 5 HOH A 132 632 22 HOH HOH . E 5 HOH A 133 633 182 HOH HOH . E 5 HOH A 134 634 206 HOH HOH . E 5 HOH A 135 635 17 HOH HOH . E 5 HOH A 136 636 67 HOH HOH . E 5 HOH A 137 637 83 HOH HOH . E 5 HOH A 138 638 134 HOH HOH . E 5 HOH A 139 639 77 HOH HOH . E 5 HOH A 140 640 102 HOH HOH . E 5 HOH A 141 641 87 HOH HOH . E 5 HOH A 142 642 120 HOH HOH . E 5 HOH A 143 643 112 HOH HOH . E 5 HOH A 144 644 57 HOH HOH . E 5 HOH A 145 645 70 HOH HOH . E 5 HOH A 146 646 118 HOH HOH . E 5 HOH A 147 647 6 HOH HOH . E 5 HOH A 148 648 93 HOH HOH . E 5 HOH A 149 649 97 HOH HOH . E 5 HOH A 150 650 89 HOH HOH . E 5 HOH A 151 651 59 HOH HOH . E 5 HOH A 152 652 96 HOH HOH . E 5 HOH A 153 653 103 HOH HOH . E 5 HOH A 154 654 75 HOH HOH . E 5 HOH A 155 655 117 HOH HOH . E 5 HOH A 156 656 174 HOH HOH . E 5 HOH A 157 657 127 HOH HOH . E 5 HOH A 158 658 104 HOH HOH . E 5 HOH A 159 659 37 HOH HOH . E 5 HOH A 160 660 190 HOH HOH . E 5 HOH A 161 661 156 HOH HOH . E 5 HOH A 162 662 148 HOH HOH . E 5 HOH A 163 663 155 HOH HOH . E 5 HOH A 164 664 86 HOH HOH . E 5 HOH A 165 665 177 HOH HOH . E 5 HOH A 166 666 173 HOH HOH . E 5 HOH A 167 667 105 HOH HOH . E 5 HOH A 168 668 100 HOH HOH . E 5 HOH A 169 669 202 HOH HOH . E 5 HOH A 170 670 10 HOH HOH . E 5 HOH A 171 671 88 HOH HOH . E 5 HOH A 172 672 185 HOH HOH . E 5 HOH A 173 673 139 HOH HOH . E 5 HOH A 174 674 165 HOH HOH . E 5 HOH A 175 675 51 HOH HOH . E 5 HOH A 176 676 152 HOH HOH . E 5 HOH A 177 677 159 HOH HOH . E 5 HOH A 178 678 63 HOH HOH . E 5 HOH A 179 679 73 HOH HOH . E 5 HOH A 180 680 31 HOH HOH . E 5 HOH A 181 681 98 HOH HOH . E 5 HOH A 182 682 115 HOH HOH . E 5 HOH A 183 683 42 HOH HOH . E 5 HOH A 184 684 194 HOH HOH . E 5 HOH A 185 685 196 HOH HOH . E 5 HOH A 186 686 24 HOH HOH . E 5 HOH A 187 687 169 HOH HOH . E 5 HOH A 188 688 198 HOH HOH . E 5 HOH A 189 689 124 HOH HOH . E 5 HOH A 190 690 211 HOH HOH . E 5 HOH A 191 691 143 HOH HOH . E 5 HOH A 192 692 147 HOH HOH . E 5 HOH A 193 693 213 HOH HOH . E 5 HOH A 194 694 128 HOH HOH . E 5 HOH A 195 695 126 HOH HOH . E 5 HOH A 196 696 62 HOH HOH . E 5 HOH A 197 697 214 HOH HOH . E 5 HOH A 198 698 64 HOH HOH . E 5 HOH A 199 699 82 HOH HOH . E 5 HOH A 200 700 154 HOH HOH . E 5 HOH A 201 701 68 HOH HOH . E 5 HOH A 202 702 158 HOH HOH . E 5 HOH A 203 703 85 HOH HOH . E 5 HOH A 204 704 175 HOH HOH . E 5 HOH A 205 705 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . B 2 8.257 2.404 19.974 1 20.82 ? C1 AKG 401 A 1 HETATM 2 O O1 AKG . . . B 2 8.114 3.047 18.909 1 20.74 ? O1 AKG 401 A 1 HETATM 3 O O2 AKG . . . B 2 8.979 1.383 20.011 1 21.59 ? O2 AKG 401 A 1 HETATM 4 C C2 AKG . . . B 2 7.589 2.866 21.188 1 19.78 ? C2 AKG 401 A 1 HETATM 5 O O5 AKG . . . B 2 6.976 3.917 21.174 1 18.95 ? O5 AKG 401 A 1 HETATM 6 C C3 AKG . . . B 2 7.684 2.054 22.461 1 19.35 ? C3 AKG 401 A 1 HETATM 7 C C4 AKG . . . B 2 6.506 1.098 22.599 1 18.99 ? C4 AKG 401 A 1 HETATM 8 C C5 AKG . . . B 2 6.697 0.205 23.804 1 18.41 ? C5 AKG 401 A 1 HETATM 9 O O3 AKG . . . B 2 5.759 -0.555 24.134 1 18.22 ? O3 AKG 401 A 1 HETATM 10 O O4 AKG . . . B 2 7.777 0.244 24.436 1 17.94 ? O4 AKG 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #