data_6ALP # _model_server_result.job_id VWQ4hU7XGWuTgzNC1hxUOw _model_server_result.datetime_utc '2024-11-13 17:10:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6alp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6ALP # _exptl.entry_id 6ALP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.21 _cell.angle_gamma 90 _cell.entry_id 6ALP _cell.length_a 80.77 _cell.length_b 66.836 _cell.length_c 62.925 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ALP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 204 A HIS 168 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc2 A OE1 GLU 206 A GLU 170 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 A NE2 HIS 352 A HIS 316 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc4 B FE FE2 . A FE2 401 1_555 C O3 SIN . A SIN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 B FE FE2 . A FE2 401 1_555 C O4 SIN . A SIN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 B FE FE2 . A FE2 401 1_555 D OB ZZU . A ZZU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 290 n n C1 O2 SIN sing 291 n n C1 C2 SIN sing 292 n n O2 HO2 SIN sing 293 n n C2 C3 SIN sing 294 n n C2 H21 SIN sing 295 n n C2 H22 SIN sing 296 n n C3 C4 SIN sing 297 n n C3 H31 SIN sing 298 n n C3 H32 SIN sing 299 n n C4 O3 SIN doub 300 n n C4 O4 SIN sing 301 n n O4 HO4 SIN sing 302 n n # _atom_sites.entry_id 6ALP _atom_sites.fract_transf_matrix[1][1] 0.012381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004314 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 401 1 FE2 FE2 . C 3 SIN A 1 402 1 SIN SIN . D 4 ZZU A 1 403 1 ZZU HAR . E 5 HOH A 1 501 45 HOH HOH . E 5 HOH A 2 502 173 HOH HOH . E 5 HOH A 3 503 16 HOH HOH . E 5 HOH A 4 504 14 HOH HOH . E 5 HOH A 5 505 62 HOH HOH . E 5 HOH A 6 506 46 HOH HOH . E 5 HOH A 7 507 67 HOH HOH . E 5 HOH A 8 508 96 HOH HOH . E 5 HOH A 9 509 88 HOH HOH . E 5 HOH A 10 510 83 HOH HOH . E 5 HOH A 11 511 25 HOH HOH . E 5 HOH A 12 512 13 HOH HOH . E 5 HOH A 13 513 15 HOH HOH . E 5 HOH A 14 514 7 HOH HOH . E 5 HOH A 15 515 65 HOH HOH . E 5 HOH A 16 516 106 HOH HOH . E 5 HOH A 17 517 131 HOH HOH . E 5 HOH A 18 518 24 HOH HOH . E 5 HOH A 19 519 125 HOH HOH . E 5 HOH A 20 520 202 HOH HOH . E 5 HOH A 21 521 73 HOH HOH . E 5 HOH A 22 522 6 HOH HOH . E 5 HOH A 23 523 197 HOH HOH . E 5 HOH A 24 524 21 HOH HOH . E 5 HOH A 25 525 43 HOH HOH . E 5 HOH A 26 526 10 HOH HOH . E 5 HOH A 27 527 56 HOH HOH . E 5 HOH A 28 528 48 HOH HOH . E 5 HOH A 29 529 161 HOH HOH . E 5 HOH A 30 530 38 HOH HOH . E 5 HOH A 31 531 162 HOH HOH . E 5 HOH A 32 532 41 HOH HOH . E 5 HOH A 33 533 66 HOH HOH . E 5 HOH A 34 534 117 HOH HOH . E 5 HOH A 35 535 8 HOH HOH . E 5 HOH A 36 536 12 HOH HOH . E 5 HOH A 37 537 115 HOH HOH . E 5 HOH A 38 538 144 HOH HOH . E 5 HOH A 39 539 3 HOH HOH . E 5 HOH A 40 540 1 HOH HOH . E 5 HOH A 41 541 128 HOH HOH . E 5 HOH A 42 542 86 HOH HOH . E 5 HOH A 43 543 137 HOH HOH . E 5 HOH A 44 544 4 HOH HOH . E 5 HOH A 45 545 101 HOH HOH . E 5 HOH A 46 546 104 HOH HOH . E 5 HOH A 47 547 9 HOH HOH . E 5 HOH A 48 548 5 HOH HOH . E 5 HOH A 49 549 181 HOH HOH . E 5 HOH A 50 550 19 HOH HOH . E 5 HOH A 51 551 17 HOH HOH . E 5 HOH A 52 552 204 HOH HOH . E 5 HOH A 53 553 42 HOH HOH . E 5 HOH A 54 554 70 HOH HOH . E 5 HOH A 55 555 22 HOH HOH . E 5 HOH A 56 556 206 HOH HOH . E 5 HOH A 57 557 49 HOH HOH . E 5 HOH A 58 558 29 HOH HOH . E 5 HOH A 59 559 34 HOH HOH . E 5 HOH A 60 560 35 HOH HOH . E 5 HOH A 61 561 99 HOH HOH . E 5 HOH A 62 562 68 HOH HOH . E 5 HOH A 63 563 169 HOH HOH . E 5 HOH A 64 564 79 HOH HOH . E 5 HOH A 65 565 91 HOH HOH . E 5 HOH A 66 566 36 HOH HOH . E 5 HOH A 67 567 20 HOH HOH . E 5 HOH A 68 568 269 HOH HOH . E 5 HOH A 69 569 203 HOH HOH . E 5 HOH A 70 570 114 HOH HOH . E 5 HOH A 71 571 122 HOH HOH . E 5 HOH A 72 572 11 HOH HOH . E 5 HOH A 73 573 39 HOH HOH . E 5 HOH A 74 574 30 HOH HOH . E 5 HOH A 75 575 90 HOH HOH . E 5 HOH A 76 576 93 HOH HOH . E 5 HOH A 77 577 40 HOH HOH . E 5 HOH A 78 578 136 HOH HOH . E 5 HOH A 79 579 23 HOH HOH . E 5 HOH A 80 580 72 HOH HOH . E 5 HOH A 81 581 157 HOH HOH . E 5 HOH A 82 582 166 HOH HOH . E 5 HOH A 83 583 84 HOH HOH . E 5 HOH A 84 584 159 HOH HOH . E 5 HOH A 85 585 211 HOH HOH . E 5 HOH A 86 586 150 HOH HOH . E 5 HOH A 87 587 102 HOH HOH . E 5 HOH A 88 588 111 HOH HOH . E 5 HOH A 89 589 140 HOH HOH . E 5 HOH A 90 590 124 HOH HOH . E 5 HOH A 91 591 76 HOH HOH . E 5 HOH A 92 592 184 HOH HOH . E 5 HOH A 93 593 228 HOH HOH . E 5 HOH A 94 594 217 HOH HOH . E 5 HOH A 95 595 134 HOH HOH . E 5 HOH A 96 596 168 HOH HOH . E 5 HOH A 97 597 151 HOH HOH . E 5 HOH A 98 598 108 HOH HOH . E 5 HOH A 99 599 85 HOH HOH . E 5 HOH A 100 600 200 HOH HOH . E 5 HOH A 101 601 172 HOH HOH . E 5 HOH A 102 602 174 HOH HOH . E 5 HOH A 103 603 135 HOH HOH . E 5 HOH A 104 604 126 HOH HOH . E 5 HOH A 105 605 27 HOH HOH . E 5 HOH A 106 606 37 HOH HOH . E 5 HOH A 107 607 238 HOH HOH . E 5 HOH A 108 608 165 HOH HOH . E 5 HOH A 109 609 103 HOH HOH . E 5 HOH A 110 610 119 HOH HOH . E 5 HOH A 111 611 75 HOH HOH . E 5 HOH A 112 612 152 HOH HOH . E 5 HOH A 113 613 98 HOH HOH . E 5 HOH A 114 614 26 HOH HOH . E 5 HOH A 115 615 116 HOH HOH . E 5 HOH A 116 616 188 HOH HOH . E 5 HOH A 117 617 31 HOH HOH . E 5 HOH A 118 618 132 HOH HOH . E 5 HOH A 119 619 164 HOH HOH . E 5 HOH A 120 620 249 HOH HOH . E 5 HOH A 121 621 44 HOH HOH . E 5 HOH A 122 622 210 HOH HOH . E 5 HOH A 123 623 61 HOH HOH . E 5 HOH A 124 624 201 HOH HOH . E 5 HOH A 125 625 256 HOH HOH . E 5 HOH A 126 626 177 HOH HOH . E 5 HOH A 127 627 145 HOH HOH . E 5 HOH A 128 628 195 HOH HOH . E 5 HOH A 129 629 2 HOH HOH . E 5 HOH A 130 630 105 HOH HOH . E 5 HOH A 131 631 28 HOH HOH . E 5 HOH A 132 632 33 HOH HOH . E 5 HOH A 133 633 59 HOH HOH . E 5 HOH A 134 634 58 HOH HOH . E 5 HOH A 135 635 18 HOH HOH . E 5 HOH A 136 636 253 HOH HOH . E 5 HOH A 137 637 266 HOH HOH . E 5 HOH A 138 638 245 HOH HOH . E 5 HOH A 139 639 80 HOH HOH . E 5 HOH A 140 640 260 HOH HOH . E 5 HOH A 141 641 262 HOH HOH . E 5 HOH A 142 642 223 HOH HOH . E 5 HOH A 143 643 252 HOH HOH . E 5 HOH A 144 644 192 HOH HOH . E 5 HOH A 145 645 268 HOH HOH . E 5 HOH A 146 646 258 HOH HOH . E 5 HOH A 147 647 32 HOH HOH . E 5 HOH A 148 648 190 HOH HOH . E 5 HOH A 149 649 259 HOH HOH . E 5 HOH A 150 650 160 HOH HOH . E 5 HOH A 151 651 257 HOH HOH . E 5 HOH A 152 652 261 HOH HOH . E 5 HOH A 153 653 95 HOH HOH . E 5 HOH A 154 654 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . C 3 6.711 0.367 23.657 1 21.01 ? C1 SIN 402 A 1 HETATM 2 O O1 SIN . . . C 3 5.74 -0.392 23.865 1 21.07 ? O1 SIN 402 A 1 HETATM 3 O O2 SIN . . . C 3 7.792 0.26 24.275 1 20.89 ? O2 SIN 402 A 1 HETATM 4 C C2 SIN . . . C 3 6.56 1.457 22.622 1 21.04 ? C2 SIN 402 A 1 HETATM 5 C C3 SIN . . . C 3 7.857 1.64 21.836 1 21.04 ? C3 SIN 402 A 1 HETATM 6 C C4 SIN . . . C 3 7.685 2.723 20.798 1 21.1 ? C4 SIN 402 A 1 HETATM 7 O O3 SIN . . . C 3 8.047 2.494 19.623 1 21.01 ? O3 SIN 402 A 1 HETATM 8 O O4 SIN . . . C 3 7.189 3.819 21.144 1 21.06 ? O4 SIN 402 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #