data_6AM9
#
_model_server_result.job_id            TtA5ftSrMHH9qQvqb4Rezw 
_model_server_result.datetime_utc      '2024-11-07 04:33:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6am9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    6AM9 
#
_exptl.entry_id    6AM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6AM9 
_cell.length_a            87.502 
_cell.length_b            109.122 
_cell.length_c            160.491 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O,P 1 1 
C,D,J,K,L,M,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 48 A GLY 48 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
metalc ? metalc2 A O SER 263 A SER 263 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc3 A OG SER 263 A SER 263 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc4 A OG SER 265 A SER 265 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc5 A O TYR 301 A TYR 301 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc6 A O GLY 303 A GLY 303 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc7 E NA NA . A NA 401 1_555 O O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc8 F NA NA . A NA 402 1_555 B O PRO 50 B PRO 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc9 B O SER 263 B SER 263 1_555 I NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc10 B OG SER 265 B SER 265 1_555 I NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc11 B O TYR 301 B TYR 301 1_555 I NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc12 B O GLY 303 B GLY 303 1_555 I NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc13 I NA NA . B NA 402 1_555 P O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc14 C O GLY 48 C GLY 48 1_555 L NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? 
metalc ? metalc15 C O SER 263 C SER 263 1_555 K NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc16 C OG SER 265 C SER 265 1_555 K NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? 
metalc ? metalc17 C O TYR 301 C TYR 301 1_555 K NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
metalc ? metalc18 C O GLY 303 C GLY 303 1_555 K NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc19 L NA NA . C NA 403 1_555 D O GLY 48 D GLY 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc20 D O SER 263 D SER 263 1_555 N NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc21 D OG SER 265 D SER 265 1_555 N NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc22 D O TYR 301 D TYR 301 1_555 N NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc23 D O GLY 303 D GLY 303 1_555 N NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc24 N NA NA . D NA 402 1_555 R O HOH . D HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6AM9 
_atom_sites.fract_transf_matrix[1][1]    0.011428 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006231 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NA A 1 401 2 NA NA . 
F 2 NA A 1 402 6 NA NA . 
G 3 PLS A 1 403 1 PLS PLS . 
H 4 0JO B 1 401 4 0JO 0JO . 
I 2 NA B 1 402 1 NA NA . 
J 4 0JO C 1 401 3 0JO 0JO . 
K 2 NA C 1 402 4 NA NA . 
L 2 NA C 1 403 7 NA NA . 
M 4 0JO D 1 401 2 0JO 0JO . 
N 2 NA D 1 402 3 NA NA . 
O 5 HOH A 1 501 40 HOH HOH . 
O 5 HOH A 2 502 37 HOH HOH . 
O 5 HOH A 3 503 77 HOH HOH . 
O 5 HOH A 4 504 44 HOH HOH . 
O 5 HOH A 5 505 46 HOH HOH . 
O 5 HOH A 6 506 53 HOH HOH . 
O 5 HOH A 7 507 26 HOH HOH . 
O 5 HOH A 8 508 95 HOH HOH . 
O 5 HOH A 9 509 63 HOH HOH . 
O 5 HOH A 10 510 85 HOH HOH . 
O 5 HOH A 11 511 100 HOH HOH . 
O 5 HOH A 12 512 68 HOH HOH . 
O 5 HOH A 13 513 84 HOH HOH . 
O 5 HOH A 14 514 117 HOH HOH . 
O 5 HOH A 15 515 106 HOH HOH . 
O 5 HOH A 16 516 111 HOH HOH . 
O 5 HOH A 17 517 75 HOH HOH . 
O 5 HOH A 18 518 66 HOH HOH . 
O 5 HOH A 19 519 89 HOH HOH . 
O 5 HOH A 20 520 59 HOH HOH . 
P 5 HOH B 1 501 54 HOH HOH . 
P 5 HOH B 2 502 39 HOH HOH . 
P 5 HOH B 3 503 48 HOH HOH . 
P 5 HOH B 4 504 86 HOH HOH . 
P 5 HOH B 5 505 102 HOH HOH . 
P 5 HOH B 6 506 99 HOH HOH . 
P 5 HOH B 7 507 43 HOH HOH . 
P 5 HOH B 8 508 74 HOH HOH . 
P 5 HOH B 9 509 56 HOH HOH . 
P 5 HOH B 10 510 125 HOH HOH . 
P 5 HOH B 11 511 116 HOH HOH . 
P 5 HOH B 12 512 61 HOH HOH . 
P 5 HOH B 13 513 47 HOH HOH . 
P 5 HOH B 14 514 36 HOH HOH . 
P 5 HOH B 15 515 120 HOH HOH . 
P 5 HOH B 16 516 29 HOH HOH . 
P 5 HOH B 17 517 19 HOH HOH . 
P 5 HOH B 18 518 64 HOH HOH . 
P 5 HOH B 19 519 72 HOH HOH . 
P 5 HOH B 20 520 108 HOH HOH . 
P 5 HOH B 21 521 82 HOH HOH . 
P 5 HOH B 22 522 13 HOH HOH . 
P 5 HOH B 23 523 113 HOH HOH . 
P 5 HOH B 24 524 12 HOH HOH . 
Q 5 HOH C 1 501 55 HOH HOH . 
Q 5 HOH C 2 502 124 HOH HOH . 
Q 5 HOH C 3 503 51 HOH HOH . 
Q 5 HOH C 4 504 119 HOH HOH . 
Q 5 HOH C 5 505 122 HOH HOH . 
Q 5 HOH C 6 506 107 HOH HOH . 
Q 5 HOH C 7 507 50 HOH HOH . 
Q 5 HOH C 8 508 33 HOH HOH . 
Q 5 HOH C 9 509 25 HOH HOH . 
Q 5 HOH C 10 510 76 HOH HOH . 
Q 5 HOH C 11 511 42 HOH HOH . 
Q 5 HOH C 12 512 109 HOH HOH . 
Q 5 HOH C 13 513 4 HOH HOH . 
Q 5 HOH C 14 514 98 HOH HOH . 
Q 5 HOH C 15 515 57 HOH HOH . 
Q 5 HOH C 16 516 81 HOH HOH . 
Q 5 HOH C 17 517 22 HOH HOH . 
Q 5 HOH C 18 518 112 HOH HOH . 
Q 5 HOH C 19 519 10 HOH HOH . 
Q 5 HOH C 20 520 62 HOH HOH . 
Q 5 HOH C 21 521 18 HOH HOH . 
Q 5 HOH C 22 522 114 HOH HOH . 
Q 5 HOH C 23 523 91 HOH HOH . 
R 5 HOH D 1 501 123 HOH HOH . 
R 5 HOH D 2 502 60 HOH HOH . 
R 5 HOH D 3 503 58 HOH HOH . 
R 5 HOH D 4 504 52 HOH HOH . 
R 5 HOH D 5 505 78 HOH HOH . 
R 5 HOH D 6 506 45 HOH HOH . 
R 5 HOH D 7 507 38 HOH HOH . 
R 5 HOH D 8 508 41 HOH HOH . 
R 5 HOH D 9 509 21 HOH HOH . 
R 5 HOH D 10 510 34 HOH HOH . 
R 5 HOH D 11 511 70 HOH HOH . 
R 5 HOH D 12 512 8 HOH HOH . 
R 5 HOH D 13 513 31 HOH HOH . 
R 5 HOH D 14 514 97 HOH HOH . 
R 5 HOH D 15 515 101 HOH HOH . 
R 5 HOH D 16 516 79 HOH HOH . 
R 5 HOH D 17 517 121 HOH HOH . 
R 5 HOH D 18 518 5 HOH HOH . 
R 5 HOH D 19 519 67 HOH HOH . 
R 5 HOH D 20 520 3 HOH HOH . 
R 5 HOH D 21 521 71 HOH HOH . 
R 5 HOH D 22 522 93 HOH HOH . 
R 5 HOH D 23 523 73 HOH HOH . 
R 5 HOH D 24 524 2 HOH HOH . 
R 5 HOH D 25 525 11 HOH HOH . 
R 5 HOH D 26 526 110 HOH HOH . 
R 5 HOH D 27 527 7 HOH HOH . 
R 5 HOH D 28 528 35 HOH HOH . 
R 5 HOH D 29 529 94 HOH HOH . 
R 5 HOH D 30 530 92 HOH HOH . 
R 5 HOH D 31 531 23 HOH HOH . 
R 5 HOH D 32 532 96 HOH HOH . 
R 5 HOH D 33 533 69 HOH HOH . 
R 5 HOH D 34 534 49 HOH HOH . 
R 5 HOH D 35 535 104 HOH HOH . 
R 5 HOH D 36 536 118 HOH HOH . 
R 5 HOH D 37 537 28 HOH HOH . 
R 5 HOH D 38 538 24 HOH HOH . 
R 5 HOH D 39 539 105 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -5.907 
_atom_site.Cartn_y               -33.426 
_atom_site.Cartn_z               -5.309 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.4 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#