data_6ANX # _model_server_result.job_id x-PZmrO6Ekwf0irHT9CB4A _model_server_result.datetime_utc '2024-12-01 18:48:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6anx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6ANX # _exptl.entry_id 6ANX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 609.22 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydrogen peroxido-kappaO)hydroxycopper' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ANX _cell.length_a 57.64 _cell.length_b 57.64 _cell.length_c 183.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ANX _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.64 57.64 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.64 57.64 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H37 Cu N6 O5 S' _chem_comp.formula_weight 609.22 _chem_comp.id SI0 _chem_comp.mon_nstd_flag . _chem_comp.name '[N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydrogen peroxido-kappaO)hydroxycopper' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 SI0 doub 283 n y C24 C23 SI0 sing 284 n y C25 C26 SI0 sing 285 n y C23 N6 SI0 doub 286 n y C26 C22 SI0 doub 287 n y N6 C22 SI0 sing 288 n y N6 CU1 SI0 sing 289 n n O4 O3 SI0 sing 290 n n O3 CU1 SI0 sing 291 n n C22 C21 SI0 sing 292 n n CU1 N5 SI0 sing 293 n n CU1 N4 SI0 sing 294 n n C16 C17 SI0 doub 295 n y C16 N5 SI0 sing 296 n y C17 C18 SI0 sing 297 n y N5 C15 SI0 doub 298 n y C21 C20 SI0 sing 299 n n C18 C19 SI0 doub 300 n y N4 C20 SI0 sing 301 n n N4 C12 SI0 sing 302 n n N4 C13 SI0 sing 303 n n C15 C19 SI0 sing 304 n y C15 C14 SI0 sing 305 n n C12 C11 SI0 sing 306 n n O2 C10 SI0 doub 307 n n C14 C13 SI0 sing 308 n n C10 N3 SI0 sing 309 n n C10 C9 SI0 sing 310 n n C11 N3 SI0 sing 311 n n C9 C8 SI0 sing 312 n n C8 C7 SI0 sing 313 n n C7 C6 SI0 sing 314 n n C6 C5 SI0 sing 315 n n C5 C4 SI0 sing 316 n n C5 S1 SI0 sing 317 n n N2 C4 SI0 sing 318 n n N2 C1 SI0 sing 319 n n C4 C2 SI0 sing 320 n n S1 C3 SI0 sing 321 n n C1 O1 SI0 doub 322 n n C1 N1 SI0 sing 323 n n C2 C3 SI0 sing 324 n n C2 N1 SI0 sing 325 n n CU1 O5 SI0 sing 326 n n C23 H1 SI0 sing 327 n n C24 H2 SI0 sing 328 n n C25 H3 SI0 sing 329 n n C26 H4 SI0 sing 330 n n C21 H5 SI0 sing 331 n n C21 H6 SI0 sing 332 n n C20 H7 SI0 sing 333 n n C20 H8 SI0 sing 334 n n C16 H9 SI0 sing 335 n n C17 H10 SI0 sing 336 n n C18 H11 SI0 sing 337 n n C19 H12 SI0 sing 338 n n C14 H13 SI0 sing 339 n n C14 H14 SI0 sing 340 n n C13 H15 SI0 sing 341 n n C13 H16 SI0 sing 342 n n C12 H17 SI0 sing 343 n n C12 H18 SI0 sing 344 n n C11 H19 SI0 sing 345 n n C11 H20 SI0 sing 346 n n N3 H21 SI0 sing 347 n n C9 H22 SI0 sing 348 n n C9 H23 SI0 sing 349 n n C8 H24 SI0 sing 350 n n C8 H25 SI0 sing 351 n n C7 H26 SI0 sing 352 n n C7 H27 SI0 sing 353 n n C6 H28 SI0 sing 354 n n C6 H29 SI0 sing 355 n n C5 H30 SI0 sing 356 n n C4 H31 SI0 sing 357 n n N2 H32 SI0 sing 358 n n C3 H33 SI0 sing 359 n n C3 H34 SI0 sing 360 n n C2 H35 SI0 sing 361 n n N1 H36 SI0 sing 362 n n O4 H37 SI0 sing 363 n n # _atom_sites.entry_id 6ANX _atom_sites.fract_transf_matrix[1][1] 0.017349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SI0 A 1 201 1 SI0 SI0 . C 3 ACT A 1 202 1 ACT ACT . D 4 SO4 A 1 203 3 SO4 SO4 . E 5 HOH A 1 301 79 HOH HOH . E 5 HOH A 2 302 49 HOH HOH . E 5 HOH A 3 303 105 HOH HOH . E 5 HOH A 4 304 66 HOH HOH . E 5 HOH A 5 305 104 HOH HOH . E 5 HOH A 6 306 38 HOH HOH . E 5 HOH A 7 307 82 HOH HOH . E 5 HOH A 8 308 58 HOH HOH . E 5 HOH A 9 309 31 HOH HOH . E 5 HOH A 10 310 20 HOH HOH . E 5 HOH A 11 311 22 HOH HOH . E 5 HOH A 12 312 45 HOH HOH . E 5 HOH A 13 313 35 HOH HOH . E 5 HOH A 14 314 47 HOH HOH . E 5 HOH A 15 315 106 HOH HOH . E 5 HOH A 16 316 93 HOH HOH . E 5 HOH A 17 317 3 HOH HOH . E 5 HOH A 18 318 2 HOH HOH . E 5 HOH A 19 319 10 HOH HOH . E 5 HOH A 20 320 12 HOH HOH . E 5 HOH A 21 321 9 HOH HOH . E 5 HOH A 22 322 73 HOH HOH . E 5 HOH A 23 323 69 HOH HOH . E 5 HOH A 24 324 91 HOH HOH . E 5 HOH A 25 325 96 HOH HOH . E 5 HOH A 26 326 55 HOH HOH . E 5 HOH A 27 327 6 HOH HOH . E 5 HOH A 28 328 78 HOH HOH . E 5 HOH A 29 329 51 HOH HOH . E 5 HOH A 30 330 21 HOH HOH . E 5 HOH A 31 331 107 HOH HOH . E 5 HOH A 32 332 15 HOH HOH . E 5 HOH A 33 333 28 HOH HOH . E 5 HOH A 34 334 99 HOH HOH . E 5 HOH A 35 335 17 HOH HOH . E 5 HOH A 36 336 7 HOH HOH . E 5 HOH A 37 337 25 HOH HOH . E 5 HOH A 38 338 94 HOH HOH . E 5 HOH A 39 339 50 HOH HOH . E 5 HOH A 40 340 59 HOH HOH . E 5 HOH A 41 341 77 HOH HOH . E 5 HOH A 42 342 89 HOH HOH . E 5 HOH A 43 343 56 HOH HOH . E 5 HOH A 44 344 13 HOH HOH . E 5 HOH A 45 345 4 HOH HOH . E 5 HOH A 46 346 65 HOH HOH . E 5 HOH A 47 347 43 HOH HOH . E 5 HOH A 48 348 46 HOH HOH . E 5 HOH A 49 349 63 HOH HOH . E 5 HOH A 50 350 41 HOH HOH . E 5 HOH A 51 351 26 HOH HOH . E 5 HOH A 52 352 32 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 1 HOH HOH . E 5 HOH A 55 355 83 HOH HOH . E 5 HOH A 56 356 48 HOH HOH . E 5 HOH A 57 357 90 HOH HOH . E 5 HOH A 58 358 16 HOH HOH . E 5 HOH A 59 359 18 HOH HOH . E 5 HOH A 60 360 68 HOH HOH . E 5 HOH A 61 361 36 HOH HOH . E 5 HOH A 62 362 57 HOH HOH . E 5 HOH A 63 363 24 HOH HOH . E 5 HOH A 64 364 72 HOH HOH . E 5 HOH A 65 365 71 HOH HOH . E 5 HOH A 66 366 34 HOH HOH . E 5 HOH A 67 367 102 HOH HOH . E 5 HOH A 68 368 27 HOH HOH . E 5 HOH A 69 369 76 HOH HOH . E 5 HOH A 70 370 14 HOH HOH . E 5 HOH A 71 371 23 HOH HOH . E 5 HOH A 72 372 11 HOH HOH . E 5 HOH A 73 373 37 HOH HOH . E 5 HOH A 74 374 44 HOH HOH . E 5 HOH A 75 375 8 HOH HOH . E 5 HOH A 76 376 29 HOH HOH . E 5 HOH A 77 377 33 HOH HOH . E 5 HOH A 78 378 40 HOH HOH . E 5 HOH A 79 379 60 HOH HOH . E 5 HOH A 80 380 19 HOH HOH . E 5 HOH A 81 381 30 HOH HOH . E 5 HOH A 82 382 88 HOH HOH . E 5 HOH A 83 383 101 HOH HOH . E 5 HOH A 84 384 92 HOH HOH . E 5 HOH A 85 385 98 HOH HOH . E 5 HOH A 86 386 95 HOH HOH . E 5 HOH A 87 387 61 HOH HOH . E 5 HOH A 88 388 97 HOH HOH . E 5 HOH A 89 389 39 HOH HOH . E 5 HOH A 90 390 54 HOH HOH . E 5 HOH A 91 391 75 HOH HOH . E 5 HOH A 92 392 74 HOH HOH . E 5 HOH A 93 393 70 HOH HOH . E 5 HOH A 94 394 62 HOH HOH . E 5 HOH A 95 395 84 HOH HOH . E 5 HOH A 96 396 52 HOH HOH . E 5 HOH A 97 397 86 HOH HOH . E 5 HOH A 98 398 85 HOH HOH . E 5 HOH A 99 399 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CU CU1 SI0 . . . B 2 24.433 25.341 -17.661 1 42.94 ? CU1 SI0 201 A 1 HETATM 2 N N6 SI0 . . . B 2 22.953 26.267 -18.562 1 41.38 ? N6 SI0 201 A 1 HETATM 3 C C23 SI0 . . . B 2 22.662 25.94 -19.938 1 45.74 ? C23 SI0 201 A 1 HETATM 4 C C24 SI0 . . . B 2 21.646 26.619 -20.619 1 44.77 ? C24 SI0 201 A 1 HETATM 5 C C25 SI0 . . . B 2 20.901 27.636 -19.976 1 46.01 ? C25 SI0 201 A 1 HETATM 6 C C26 SI0 . . . B 2 21.185 27.985 -18.643 1 39.25 ? C26 SI0 201 A 1 HETATM 7 C C22 SI0 . . . B 2 22.209 27.307 -17.935 1 39.22 ? C22 SI0 201 A 1 HETATM 8 C C21 SI0 . . . B 2 22.391 27.687 -16.477 1 36.33 ? C21 SI0 201 A 1 HETATM 9 C C20 SI0 . . . B 2 23.598 27.155 -15.692 1 35.55 ? C20 SI0 201 A 1 HETATM 10 N N4 SI0 . . . B 2 23.818 25.717 -15.74 1 34.58 ? N4 SI0 201 A 1 HETATM 11 N N5 SI0 . . . B 2 26.127 24.551 -16.829 1 45.25 ? N5 SI0 201 A 1 HETATM 12 C C16 SI0 . . . B 2 26.748 23.451 -17.516 1 45.05 ? C16 SI0 201 A 1 HETATM 13 C C17 SI0 . . . B 2 27.944 22.818 -17.064 1 45.68 ? C17 SI0 201 A 1 HETATM 14 C C18 SI0 . . . B 2 28.594 23.219 -15.888 1 45.46 ? C18 SI0 201 A 1 HETATM 15 C C19 SI0 . . . B 2 28.019 24.274 -15.169 1 52 ? C19 SI0 201 A 1 HETATM 16 C C15 SI0 . . . B 2 26.826 24.926 -15.625 1 42.96 ? C15 SI0 201 A 1 HETATM 17 C C14 SI0 . . . B 2 26.178 26.007 -14.843 1 44.42 ? C14 SI0 201 A 1 HETATM 18 C C13 SI0 . . . B 2 24.76 25.414 -14.661 1 36.14 ? C13 SI0 201 A 1 HETATM 19 C C12 SI0 . . . B 2 22.825 24.64 -15.484 1 28.91 ? C12 SI0 201 A 1 HETATM 20 C C11 SI0 . . . B 2 22.154 24.764 -14.137 1 26.61 ? C11 SI0 201 A 1 HETATM 21 N N3 SI0 . . . B 2 20.848 24.088 -13.952 1 18.59 ? N3 SI0 201 A 1 HETATM 22 C C10 SI0 . . . B 2 19.738 24.736 -14.185 1 16.32 ? C10 SI0 201 A 1 HETATM 23 O O2 SI0 . . . B 2 19.823 25.893 -14.902 1 15.62 ? O2 SI0 201 A 1 HETATM 24 C C9 SI0 . . . B 2 18.379 24.243 -13.817 1 13.94 ? C9 SI0 201 A 1 HETATM 25 C C8 SI0 . . . B 2 17.594 25.395 -13.148 1 14.54 ? C8 SI0 201 A 1 HETATM 26 C C7 SI0 . . . B 2 18.316 26.046 -11.984 1 13.04 ? C7 SI0 201 A 1 HETATM 27 C C6 SI0 . . . B 2 17.456 27.152 -11.363 1 11.6 ? C6 SI0 201 A 1 HETATM 28 C C5 SI0 . . . B 2 18.071 27.771 -10.097 1 11.39 ? C5 SI0 201 A 1 HETATM 29 C C4 SI0 . . . B 2 17.475 29.096 -9.689 1 10.72 ? C4 SI0 201 A 1 HETATM 30 N N2 SI0 . . . B 2 16.012 29.164 -9.72 1 10.84 ? N2 SI0 201 A 1 HETATM 31 S S1 SI0 . . . B 2 17.921 26.76 -8.594 1 13.01 ? S1 SI0 201 A 1 HETATM 32 C C3 SI0 . . . B 2 18.537 28.153 -7.668 1 13.75 ? C3 SI0 201 A 1 HETATM 33 C C2 SI0 . . . B 2 17.802 29.407 -8.185 1 11.45 ? C2 SI0 201 A 1 HETATM 34 N N1 SI0 . . . B 2 16.508 29.547 -7.564 1 13.5 ? N1 SI0 201 A 1 HETATM 35 C C1 SI0 . . . B 2 15.505 29.364 -8.441 1 12.41 ? C1 SI0 201 A 1 HETATM 36 O O1 SI0 . . . B 2 14.209 29.402 -8.24 1 12.59 ? O1 SI0 201 A 1 HETATM 37 O O3 SI0 . . . B 2 23.741 23.619 -18.217 1 42.06 ? O3 SI0 201 A 1 HETATM 38 O O4 SI0 . . . B 2 22.38 22.95 -18.374 1 43.75 ? O4 SI0 201 A 1 HETATM 39 O O5 SI0 . . . B 2 25.902 26.803 -19.235 0.8 46 ? O5 SI0 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #