data_6AO5 # _model_server_result.job_id 1rgQbu6GxMs1nnTvAQEyiA _model_server_result.datetime_utc '2024-12-04 08:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ao5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6AO5 # _exptl.entry_id 6AO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AO5 _cell.length_a 223.678 _cell.length_b 223.678 _cell.length_c 79.645 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 136 A ASN 151 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A OD2 ASP 149 A ASP 164 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 C O1G ANP . A ANP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc4 C O1B ANP . A ANP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 C O1A ANP . A ANP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6AO5 _atom_sites.fract_transf_matrix[1][1] 0.004471 _atom_sites.fract_transf_matrix[1][2] 0.002581 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 501 600 ANP ANP . D 4 MG A 1 502 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 43.747 98.165 21.743 1 34.52 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . C 3 43.777 97.619 20.258 1 34.89 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . C 3 44.224 97.01 22.707 1 143.51 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . C 3 42.35 98.606 22.064 1 24.52 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . C 3 46.273 99.199 21.175 1 36.73 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . C 3 46.062 98.631 19.741 1 37.67 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . C 3 47.023 100.482 21.045 1 35.07 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . C 3 44.79 99.491 21.909 1 85.23 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . C 3 47.452 96.771 21.403 1 47.94 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . C 3 46.257 96.167 20.764 1 48.09 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . C 3 48.092 95.964 22.537 1 51.92 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . C 3 47.072 98.172 22.033 1 118.53 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . C 3 48.498 97.096 20.261 1 34.02 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . C 3 49.75 97.75 20.558 1 34.23 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . C 3 50.645 97.649 19.35 1 34.99 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . C 3 50.576 96.318 18.816 1 29.68 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . C 3 50.266 98.547 18.178 1 36.04 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . C 3 50.856 99.836 18.301 1 36.27 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . C 3 50.795 97.778 16.954 1 34.28 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . C 3 51.996 98.332 16.428 1 38.43 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . C 3 51.036 96.355 17.483 1 29.24 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . C 3 50.323 95.337 16.722 1 28.35 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . C 3 49.117 94.764 17.024 1 27.62 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . C 3 48.707 93.884 16.141 1 23.4 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . C 3 49.711 93.887 15.187 1 20.36 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . C 3 49.883 93.166 13.989 1 21.24 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . C 3 48.998 92.282 13.522 1 19.83 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . C 3 51 93.41 13.265 1 24.74 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . C 3 51.882 94.306 13.721 1 25.82 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . C 3 51.83 95.04 14.836 1 26.92 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . C 3 50.714 94.782 15.527 1 25.75 ? C4 ANP 501 A 1 HETATM 32 H HNB1 ANP . . . C 3 44.408 100.226 21.537 1 102.76 ? HNB1 ANP 501 A 1 HETATM 33 H "H5'1" ANP . . . C 3 50.172 97.317 21.32 1 41.56 ? "H5'1" ANP 501 A 1 HETATM 34 H "H5'2" ANP . . . C 3 49.586 98.693 20.767 1 41.56 ? "H5'2" ANP 501 A 1 HETATM 35 H H4' ANP . . . C 3 51.578 97.817 19.592 1 42.47 ? H4' ANP 501 A 1 HETATM 36 H H3' ANP . . . C 3 49.309 98.609 18.133 1 43.73 ? H3' ANP 501 A 1 HETATM 37 H HO3' ANP . . . C 3 50.411 100.414 17.798 1 44.01 ? HO3' ANP 501 A 1 HETATM 38 H H2' ANP . . . C 3 50.109 97.735 16.277 1 41.62 ? H2' ANP 501 A 1 HETATM 39 H HO2' ANP . . . C 3 52.595 98.413 17.078 1 46.6 ? HO2' ANP 501 A 1 HETATM 40 H H1' ANP . . . C 3 51.99 96.184 17.461 1 35.57 ? H1' ANP 501 A 1 HETATM 41 H H8 ANP . . . C 3 48.621 94.98 17.813 1 33.63 ? H8 ANP 501 A 1 HETATM 42 H HN61 ANP . . . C 3 48.235 92.092 14.007 1 24.28 ? HN61 ANP 501 A 1 HETATM 43 H HN62 ANP . . . C 3 49.147 91.865 12.723 1 24.28 ? HN62 ANP 501 A 1 HETATM 44 H H2 ANP . . . C 3 52.668 94.441 13.166 1 31.47 ? H2 ANP 501 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #