data_6AOG
#
_model_server_result.job_id            qs9gYFMgBIZX2ZpyU5o2IA 
_model_server_result.datetime_utc      '2024-11-24 03:49:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6aog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":702}' 
#
_entry.id    6AOG 
#
_exptl.entry_id    6AOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6AOG 
_cell.length_a            53.589 
_cell.length_b            144.916 
_cell.length_c            176.044 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 326 n n 
PA O2A NDP sing 327 n n 
PA O5B NDP sing 328 n n 
PA O3 NDP sing 329 n n 
O2A HOA2 NDP sing 330 n n 
O5B C5B NDP sing 331 n n 
C5B C4B NDP sing 332 n n 
C5B H51A NDP sing 333 n n 
C5B H52A NDP sing 334 n n 
C4B O4B NDP sing 335 n n 
C4B C3B NDP sing 336 n n 
C4B H4B NDP sing 337 n n 
O4B C1B NDP sing 338 n n 
C3B O3B NDP sing 339 n n 
C3B C2B NDP sing 340 n n 
C3B H3B NDP sing 341 n n 
O3B HO3A NDP sing 342 n n 
C2B O2B NDP sing 343 n n 
C2B C1B NDP sing 344 n n 
C2B H2B NDP sing 345 n n 
O2B P2B NDP sing 346 n n 
C1B N9A NDP sing 347 n n 
C1B H1B NDP sing 348 n n 
N9A C8A NDP sing 349 n y 
N9A C4A NDP sing 350 n y 
C8A N7A NDP doub 351 n y 
C8A H8A NDP sing 352 n n 
N7A C5A NDP sing 353 n y 
C5A C6A NDP sing 354 n y 
C5A C4A NDP doub 355 n y 
C6A N6A NDP sing 356 n n 
C6A N1A NDP doub 357 n y 
N6A H61A NDP sing 358 n n 
N6A H62A NDP sing 359 n n 
N1A C2A NDP sing 360 n y 
C2A N3A NDP doub 361 n y 
C2A H2A NDP sing 362 n n 
N3A C4A NDP sing 363 n y 
O3 PN NDP sing 364 n n 
PN O1N NDP doub 365 n n 
PN O2N NDP sing 366 n n 
PN O5D NDP sing 367 n n 
O2N H21N NDP sing 368 n n 
O5D C5D NDP sing 369 n n 
C5D C4D NDP sing 370 n n 
C5D H51N NDP sing 371 n n 
C5D H52N NDP sing 372 n n 
C4D O4D NDP sing 373 n n 
C4D C3D NDP sing 374 n n 
C4D H4D NDP sing 375 n n 
O4D C1D NDP sing 376 n n 
C3D O3D NDP sing 377 n n 
C3D C2D NDP sing 378 n n 
C3D H3D NDP sing 379 n n 
O3D HO3N NDP sing 380 n n 
C2D O2D NDP sing 381 n n 
C2D C1D NDP sing 382 n n 
C2D H2D NDP sing 383 n n 
O2D HO2N NDP sing 384 n n 
C1D N1N NDP sing 385 n n 
C1D H1D NDP sing 386 n n 
N1N C2N NDP sing 387 n n 
N1N C6N NDP sing 388 n n 
C2N C3N NDP doub 389 n n 
C2N H2N NDP sing 390 n n 
C3N C7N NDP sing 391 n n 
C3N C4N NDP sing 392 n n 
C7N O7N NDP doub 393 n n 
C7N N7N NDP sing 394 n n 
N7N H71N NDP sing 395 n n 
N7N H72N NDP sing 396 n n 
C4N C5N NDP sing 397 n n 
C4N H41N NDP sing 398 n n 
C4N H42N NDP sing 399 n n 
C5N C6N NDP doub 400 n n 
C5N H5N NDP sing 401 n n 
C6N H6N NDP sing 402 n n 
P2B O1X NDP doub 403 n n 
P2B O2X NDP sing 404 n n 
P2B O3X NDP sing 405 n n 
O2X HOP2 NDP sing 406 n n 
O3X HOP3 NDP sing 407 n n 
#
_atom_sites.entry_id                     6AOG 
_atom_sites.fract_transf_matrix[1][1]    0.018661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 701 701 UMP UMP . 
D 3 NDP A 1 702 702 NDP NDP . 
E 4 CB3 A 1 703 703 CB3 CB3 . 
F 5 CP6 A 1 704 1 CP6 PYR . 
G 2 UMP B 1 701 701 UMP UMP . 
H 3 NDP B 1 702 702 NDP NDP . 
I 4 CB3 B 1 703 703 CB3 CB3 . 
J 5 CP6 B 1 704 2 CP6 PYR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . H 3 3.192 28.931 -68.467 1 89.28 ? PA NDP 702 B 1 
HETATM 2 O O1A NDP . . . H 3 2.486 30.189 -68.032 1 89.17 ? O1A NDP 702 B 1 
HETATM 3 O O2A NDP . . . H 3 4.496 29.007 -69.229 1 88.95 ? O2A NDP 702 B 1 
HETATM 4 O O5B NDP . . . H 3 2.147 28.102 -69.365 1 91.28 ? O5B NDP 702 B 1 
HETATM 5 C C5B NDP . . . H 3 2.382 26.721 -69.611 1 96.02 ? C5B NDP 702 B 1 
HETATM 6 C C4B NDP . . . H 3 1.328 26.163 -70.554 1 100 ? C4B NDP 702 B 1 
HETATM 7 O O4B NDP . . . H 3 1.033 27.095 -71.602 1 99.7 ? O4B NDP 702 B 1 
HETATM 8 C C3B NDP . . . H 3 1.858 24.901 -71.211 1 103.24 ? C3B NDP 702 B 1 
HETATM 9 O O3B NDP . . . H 3 1.294 23.736 -70.599 1 107.3 ? O3B NDP 702 B 1 
HETATM 10 C C2B NDP . . . H 3 1.519 25.035 -72.688 1 104.39 ? C2B NDP 702 B 1 
HETATM 11 O O2B NDP . . . H 3 0.341 24.314 -73.062 1 107.88 ? O2B NDP 702 B 1 
HETATM 12 C C1B NDP . . . H 3 1.323 26.532 -72.886 1 102.48 ? C1B NDP 702 B 1 
HETATM 13 N N9A NDP . . . H 3 2.612 27.058 -73.405 1 103.59 ? N9A NDP 702 B 1 
HETATM 14 C C8A NDP . . . H 3 3.53 27.77 -72.719 1 103.9 ? C8A NDP 702 B 1 
HETATM 15 N N7A NDP . . . H 3 4.603 28.071 -73.493 1 103.97 ? N7A NDP 702 B 1 
HETATM 16 C C5A NDP . . . H 3 4.382 27.537 -74.707 1 104.05 ? C5A NDP 702 B 1 
HETATM 17 C C6A NDP . . . H 3 5.106 27.477 -76.002 1 104.19 ? C6A NDP 702 B 1 
HETATM 18 N N6A NDP . . . H 3 6.317 28.066 -76.157 1 104.12 ? N6A NDP 702 B 1 
HETATM 19 N N1A NDP . . . H 3 4.515 26.813 -77.026 1 104.14 ? N1A NDP 702 B 1 
HETATM 20 C C2A NDP . . . H 3 3.311 26.221 -76.893 1 104.66 ? C2A NDP 702 B 1 
HETATM 21 N N3A NDP . . . H 3 2.599 26.237 -75.749 1 104.36 ? N3A NDP 702 B 1 
HETATM 22 C C4A NDP . . . H 3 3.071 26.867 -74.643 1 104.03 ? C4A NDP 702 B 1 
HETATM 23 O O3 NDP . . . H 3 3.379 27.989 -67.169 1 84.72 ? O3 NDP 702 B 1 
HETATM 24 P PN NDP . . . H 3 4.586 28.154 -66.112 1 80.63 ? PN NDP 702 B 1 
HETATM 25 O O1N NDP . . . H 3 4.408 27.102 -65.044 1 80.89 ? O1N NDP 702 B 1 
HETATM 26 O O2N NDP . . . H 3 5.893 28.23 -66.866 1 80.25 ? O2N NDP 702 B 1 
HETATM 27 O O5D NDP . . . H 3 4.302 29.591 -65.447 1 78.4 ? O5D NDP 702 B 1 
HETATM 28 C C5D NDP . . . H 3 3.298 29.729 -64.445 1 76.83 ? C5D NDP 702 B 1 
HETATM 29 C C4D NDP . . . H 3 3.975 29.947 -63.096 1 75.34 ? C4D NDP 702 B 1 
HETATM 30 O O4D NDP . . . H 3 4.802 31.112 -63.158 1 75.11 ? O4D NDP 702 B 1 
HETATM 31 C C3D NDP . . . H 3 2.965 30.185 -61.986 1 74.52 ? C3D NDP 702 B 1 
HETATM 32 O O3D NDP . . . H 3 3.429 29.509 -60.813 1 73.48 ? O3D NDP 702 B 1 
HETATM 33 C C2D NDP . . . H 3 2.972 31.686 -61.766 1 73.39 ? C2D NDP 702 B 1 
HETATM 34 O O2D NDP . . . H 3 2.768 32.029 -60.396 1 73.29 ? O2D NDP 702 B 1 
HETATM 35 C C1D NDP . . . H 3 4.367 32.094 -62.21 1 73.83 ? C1D NDP 702 B 1 
HETATM 36 N N1N NDP . . . H 3 4.4 33.431 -62.803 1 73.71 ? N1N NDP 702 B 1 
HETATM 37 C C2N NDP . . . H 3 5.307 34.293 -62.328 1 73.98 ? C2N NDP 702 B 1 
HETATM 38 C C3N NDP . . . H 3 5.428 35.587 -62.825 1 74.54 ? C3N NDP 702 B 1 
HETATM 39 C C7N NDP . . . H 3 6.46 36.513 -62.247 1 75.02 ? C7N NDP 702 B 1 
HETATM 40 O O7N NDP . . . H 3 6.987 37.352 -62.961 1 77.36 ? O7N NDP 702 B 1 
HETATM 41 N N7N NDP . . . H 3 6.78 36.4 -60.956 1 73.66 ? N7N NDP 702 B 1 
HETATM 42 C C4N NDP . . . H 3 4.527 36.061 -63.941 1 73.89 ? C4N NDP 702 B 1 
HETATM 43 C C5N NDP . . . H 3 3.584 35.034 -64.373 1 74.84 ? C5N NDP 702 B 1 
HETATM 44 C C6N NDP . . . H 3 3.559 33.768 -63.796 1 74.98 ? C6N NDP 702 B 1 
HETATM 45 P P2B NDP . . . H 3 0.343 22.773 -73.569 1 111.77 ? P2B NDP 702 B 1 
HETATM 46 O O1X NDP . . . H 3 0.86 21.972 -72.395 1 111.52 ? O1X NDP 702 B 1 
HETATM 47 O O2X NDP . . . H 3 -1.1 22.469 -73.902 1 109.93 ? O2X NDP 702 B 1 
HETATM 48 O O3X NDP . . . H 3 1.258 22.783 -74.771 1 112.1 ? O3X NDP 702 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#