data_6AOG # _model_server_result.job_id WbaSgkb-DvdSkRxn7IB60A _model_server_result.datetime_utc '2024-11-24 03:29:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 6AOG # _exptl.entry_id 6AOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AOG _cell.length_a 53.589 _cell.length_b 144.916 _cell.length_c 176.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 70 n y N1 C8A CB3 sing 71 n y N1 HN1 CB3 sing 72 n n C2 NA2 CB3 sing 73 n n C2 N3 CB3 doub 74 n y NA2 HN21 CB3 sing 75 n n NA2 HN22 CB3 sing 76 n n N3 C4 CB3 sing 77 n y C4 O4 CB3 doub 78 n n C4 C4A CB3 sing 79 n y C4A C5 CB3 doub 80 n y C4A C8A CB3 sing 81 n y C5 C6 CB3 sing 82 n y C5 H5 CB3 sing 83 n n C6 C7 CB3 doub 84 n y C6 C9 CB3 sing 85 n n C7 C8 CB3 sing 86 n y C7 H7 CB3 sing 87 n n C8 C8A CB3 doub 88 n y C8 H8 CB3 sing 89 n n C9 N10 CB3 sing 90 n n C9 H91 CB3 sing 91 n n C9 H92 CB3 sing 92 n n N10 C14 CB3 sing 93 n n N10 CP1 CB3 sing 94 n n C11 C12 CB3 doub 95 n y C11 C16 CB3 sing 96 n y C11 C CB3 sing 97 n n C12 C13 CB3 sing 98 n y C12 H12 CB3 sing 99 n n C13 C14 CB3 doub 100 n y C13 H13 CB3 sing 101 n n C14 C15 CB3 sing 102 n y C15 C16 CB3 doub 103 n y C15 H15 CB3 sing 104 n n C16 H16 CB3 sing 105 n n C O CB3 doub 106 n n C N CB3 sing 107 n n N CA CB3 sing 108 n n N HN CB3 sing 109 n n CA CB CB3 sing 110 n n CA CT CB3 sing 111 n n CA HA CB3 sing 112 n n CB CG CB3 sing 113 n n CB HB1 CB3 sing 114 n n CB HB2 CB3 sing 115 n n CG CD CB3 sing 116 n n CG HG1 CB3 sing 117 n n CG HG2 CB3 sing 118 n n CD OE1 CB3 doub 119 n n CD OE2 CB3 sing 120 n n OE2 HOE2 CB3 sing 121 n n CT O1 CB3 doub 122 n n CT O2 CB3 sing 123 n n O2 HO2 CB3 sing 124 n n CP1 CP2 CB3 sing 125 n n CP1 HP11 CB3 sing 126 n n CP1 HP12 CB3 sing 127 n n CP2 CP3 CB3 trip 128 n n CP3 HP3 CB3 sing 129 n n # _atom_sites.entry_id 6AOG _atom_sites.fract_transf_matrix[1][1] 0.018661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 CP6 A 1 704 1 CP6 PYR . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 CP6 B 1 704 2 CP6 PYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . E 4 17.345 83.167 -31.789 0.5 38.1 ? N1 CB3 703 A 1 HETATM 2 C C2 CB3 . . . E 4 16.576 82.892 -32.859 0.5 38.16 ? C2 CB3 703 A 1 HETATM 3 N NA2 CB3 . . . E 4 15.405 82.236 -32.669 0.5 37.72 ? NA2 CB3 703 A 1 HETATM 4 N N3 CB3 . . . E 4 16.93 83.239 -34.123 0.5 38.18 ? N3 CB3 703 A 1 HETATM 5 C C4 CB3 . . . E 4 18.081 83.889 -34.394 0.5 38.02 ? C4 CB3 703 A 1 HETATM 6 O O4 CB3 . . . E 4 18.39 84.202 -35.563 0.5 37.54 ? O4 CB3 703 A 1 HETATM 7 C C4A CB3 . . . E 4 18.964 84.22 -33.254 0.5 38.21 ? C4A CB3 703 A 1 HETATM 8 C C5 CB3 . . . E 4 20.168 84.888 -33.405 0.5 38.53 ? C5 CB3 703 A 1 HETATM 9 C C6 CB3 . . . E 4 20.933 85.157 -32.275 0.5 38.62 ? C6 CB3 703 A 1 HETATM 10 C C7 CB3 . . . E 4 20.513 84.769 -31.004 0.5 38.28 ? C7 CB3 703 A 1 HETATM 11 C C8 CB3 . . . E 4 19.309 84.098 -30.812 0.5 38.05 ? C8 CB3 703 A 1 HETATM 12 C C8A CB3 . . . E 4 18.512 83.807 -31.909 0.5 38.09 ? C8A CB3 703 A 1 HETATM 13 C C9 CB3 . . . E 4 22.242 85.883 -32.434 0.5 39.25 ? C9 CB3 703 A 1 HETATM 14 N N10 CB3 . . . E 4 22.319 86.475 -33.76 0.5 40 ? N10 CB3 703 A 1 HETATM 15 C C11 CB3 . . . E 4 19.497 89.239 -35.151 0.5 43.18 ? C11 CB3 703 A 1 HETATM 16 C C12 CB3 . . . E 4 20.618 88.938 -35.912 0.5 42.36 ? C12 CB3 703 A 1 HETATM 17 C C13 CB3 . . . E 4 21.547 88.016 -35.441 0.5 41.54 ? C13 CB3 703 A 1 HETATM 18 C C14 CB3 . . . E 4 21.361 87.389 -34.215 0.5 40.91 ? C14 CB3 703 A 1 HETATM 19 C C15 CB3 . . . E 4 20.241 87.69 -33.451 0.5 41.61 ? C15 CB3 703 A 1 HETATM 20 C C16 CB3 . . . E 4 19.313 88.615 -33.921 0.5 42.54 ? C16 CB3 703 A 1 HETATM 21 C C CB3 . . . E 4 18.49 90.237 -35.65 0.5 44.61 ? C CB3 703 A 1 HETATM 22 O O CB3 . . . E 4 17.751 90.786 -34.851 0.5 44.93 ? O CB3 703 A 1 HETATM 23 N N CB3 . . . E 4 18.428 90.515 -36.95 0.5 46.24 ? N CB3 703 A 1 HETATM 24 C CA CB3 . . . E 4 19.241 91.56 -37.539 0.5 48.22 ? CA CB3 703 A 1 HETATM 25 C CB CB3 . . . E 4 19.282 91.405 -39.055 0.5 48.91 ? CB CB3 703 A 1 HETATM 26 C CG CB3 . . . E 4 20.49 90.57 -39.47 0.5 49.84 ? CG CB3 703 A 1 HETATM 27 C CD CB3 . . . E 4 20.176 89.826 -40.746 0.5 50.48 ? CD CB3 703 A 1 HETATM 28 O OE1 CB3 . . . E 4 20.157 88.575 -40.731 0.5 50.2 ? OE1 CB3 703 A 1 HETATM 29 O OE2 CB3 . . . E 4 19.943 90.496 -41.775 0.5 51.14 ? OE2 CB3 703 A 1 HETATM 30 C CT CB3 . . . E 4 18.74 92.926 -37.176 0.5 48.98 ? CT CB3 703 A 1 HETATM 31 O O1 CB3 . . . E 4 18.33 93.113 -36.01 0.5 49.48 ? O1 CB3 703 A 1 HETATM 32 O O2 CB3 . . . E 4 18.754 93.823 -38.048 0.5 49.56 ? O2 CB3 703 A 1 HETATM 33 C CP1 CB3 . . . E 4 23.443 86.139 -34.611 0.5 39.93 ? CP1 CB3 703 A 1 HETATM 34 C CP2 CB3 . . . E 4 23.08 85.13 -35.615 0.5 39.93 ? CP2 CB3 703 A 1 HETATM 35 C CP3 CB3 . . . E 4 22.716 84.181 -36.394 0.5 39.75 ? CP3 CB3 703 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #