data_6AOG # _model_server_result.job_id yNgOQ68fZfSf4LMZBZnO5w _model_server_result.datetime_utc '2024-11-24 03:40:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 6AOG # _exptl.entry_id 6AOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AOG _cell.length_a 53.589 _cell.length_b 144.916 _cell.length_c 176.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 70 n y N1 C8A CB3 sing 71 n y N1 HN1 CB3 sing 72 n n C2 NA2 CB3 sing 73 n n C2 N3 CB3 doub 74 n y NA2 HN21 CB3 sing 75 n n NA2 HN22 CB3 sing 76 n n N3 C4 CB3 sing 77 n y C4 O4 CB3 doub 78 n n C4 C4A CB3 sing 79 n y C4A C5 CB3 doub 80 n y C4A C8A CB3 sing 81 n y C5 C6 CB3 sing 82 n y C5 H5 CB3 sing 83 n n C6 C7 CB3 doub 84 n y C6 C9 CB3 sing 85 n n C7 C8 CB3 sing 86 n y C7 H7 CB3 sing 87 n n C8 C8A CB3 doub 88 n y C8 H8 CB3 sing 89 n n C9 N10 CB3 sing 90 n n C9 H91 CB3 sing 91 n n C9 H92 CB3 sing 92 n n N10 C14 CB3 sing 93 n n N10 CP1 CB3 sing 94 n n C11 C12 CB3 doub 95 n y C11 C16 CB3 sing 96 n y C11 C CB3 sing 97 n n C12 C13 CB3 sing 98 n y C12 H12 CB3 sing 99 n n C13 C14 CB3 doub 100 n y C13 H13 CB3 sing 101 n n C14 C15 CB3 sing 102 n y C15 C16 CB3 doub 103 n y C15 H15 CB3 sing 104 n n C16 H16 CB3 sing 105 n n C O CB3 doub 106 n n C N CB3 sing 107 n n N CA CB3 sing 108 n n N HN CB3 sing 109 n n CA CB CB3 sing 110 n n CA CT CB3 sing 111 n n CA HA CB3 sing 112 n n CB CG CB3 sing 113 n n CB HB1 CB3 sing 114 n n CB HB2 CB3 sing 115 n n CG CD CB3 sing 116 n n CG HG1 CB3 sing 117 n n CG HG2 CB3 sing 118 n n CD OE1 CB3 doub 119 n n CD OE2 CB3 sing 120 n n OE2 HOE2 CB3 sing 121 n n CT O1 CB3 doub 122 n n CT O2 CB3 sing 123 n n O2 HO2 CB3 sing 124 n n CP1 CP2 CB3 sing 125 n n CP1 HP11 CB3 sing 126 n n CP1 HP12 CB3 sing 127 n n CP2 CP3 CB3 trip 128 n n CP3 HP3 CB3 sing 129 n n # _atom_sites.entry_id 6AOG _atom_sites.fract_transf_matrix[1][1] 0.018661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 CP6 A 1 704 1 CP6 PYR . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 CP6 B 1 704 2 CP6 PYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . I 4 42.129 54.078 -41.15 0.5 33.92 ? N1 CB3 703 B 1 HETATM 2 C C2 CB3 . . . I 4 42.004 54.288 -42.472 0.5 33.92 ? C2 CB3 703 B 1 HETATM 3 N NA2 CB3 . . . I 4 43.004 54.916 -43.134 0.5 33.83 ? NA2 CB3 703 B 1 HETATM 4 N N3 CB3 . . . I 4 40.909 53.908 -43.174 0.5 34.01 ? N3 CB3 703 B 1 HETATM 5 C C4 CB3 . . . I 4 39.867 53.282 -42.587 0.5 34.09 ? C4 CB3 703 B 1 HETATM 6 O O4 CB3 . . . I 4 38.866 52.938 -43.252 0.5 34.14 ? O4 CB3 703 B 1 HETATM 7 C C4A CB3 . . . I 4 39.95 53.02 -41.132 0.5 33.97 ? C4A CB3 703 B 1 HETATM 8 C C5 CB3 . . . I 4 38.946 52.384 -40.419 0.5 33.98 ? C5 CB3 703 B 1 HETATM 9 C C6 CB3 . . . I 4 39.11 52.18 -39.054 0.5 33.92 ? C6 CB3 703 B 1 HETATM 10 C C7 CB3 . . . I 4 40.264 52.604 -38.398 0.5 33.94 ? C7 CB3 703 B 1 HETATM 11 C C8 CB3 . . . I 4 41.295 53.245 -39.078 0.5 33.91 ? C8 CB3 703 B 1 HETATM 12 C C8A CB3 . . . I 4 41.173 53.469 -40.44 0.5 33.91 ? C8A CB3 703 B 1 HETATM 13 C C9 CB3 . . . I 4 38.026 51.485 -38.269 0.5 34 ? C9 CB3 703 B 1 HETATM 14 N N10 CB3 . . . I 4 37.111 50.819 -39.183 0.5 34.28 ? N10 CB3 703 B 1 HETATM 15 C C11 CB3 . . . I 4 38.427 48 -42 0.5 35 ? C11 CB3 703 B 1 HETATM 16 C C12 CB3 . . . I 4 37.083 48.357 -41.941 0.5 34.67 ? C12 CB3 703 B 1 HETATM 17 C C13 CB3 . . . I 4 36.652 49.292 -41.005 0.5 34.45 ? C13 CB3 703 B 1 HETATM 18 C C14 CB3 . . . I 4 37.558 49.878 -40.125 0.5 34.47 ? C14 CB3 703 B 1 HETATM 19 C C15 CB3 . . . I 4 38.901 49.522 -40.185 0.5 34.58 ? C15 CB3 703 B 1 HETATM 20 C C16 CB3 . . . I 4 39.33 48.584 -41.12 0.5 34.73 ? C16 CB3 703 B 1 HETATM 21 C C CB3 . . . I 4 38.91 46.99 -43.005 0.5 35.36 ? C CB3 703 B 1 HETATM 22 O O CB3 . . . I 4 39.987 46.444 -42.83 0.5 34.77 ? O CB3 703 B 1 HETATM 23 N N CB3 . . . I 4 38.159 46.712 -44.066 0.5 36.31 ? N CB3 703 B 1 HETATM 24 C CA CB3 . . . I 4 37.129 45.694 -44.013 0.5 37.73 ? CA CB3 703 B 1 HETATM 25 C CB CB3 . . . I 4 36.146 45.874 -45.165 0.5 38.42 ? CB CB3 703 B 1 HETATM 26 C CG CB3 . . . I 4 34.857 46.528 -44.674 0.5 39.49 ? CG CB3 703 B 1 HETATM 27 C CD CB3 . . . I 4 34.254 47.356 -45.784 0.5 39.99 ? CD CB3 703 B 1 HETATM 28 O OE1 CB3 . . . I 4 33.802 48.493 -45.517 0.5 39.8 ? OE1 CB3 703 B 1 HETATM 29 O OE2 CB3 . . . I 4 34.23 46.867 -46.934 0.5 40.7 ? OE2 CB3 703 B 1 HETATM 30 C CT CB3 . . . I 4 37.713 44.312 -44.046 0.5 38.06 ? CT CB3 703 B 1 HETATM 31 O O1 CB3 . . . I 4 38.559 44.002 -43.181 0.5 38.5 ? O1 CB3 703 B 1 HETATM 32 O O2 CB3 . . . I 4 37.329 43.521 -44.933 0.5 38.54 ? O2 CB3 703 B 1 HETATM 33 C CP1 CB3 . . . I 4 35.698 51.137 -39.103 0.5 34.64 ? CP1 CB3 703 B 1 HETATM 34 C CP2 CB3 . . . I 4 35.318 52.005 -40.224 0.5 34.82 ? CP2 CB3 703 B 1 HETATM 35 C CP3 CB3 . . . I 4 35.061 52.845 -41.15 0.5 35.08 ? CP3 CB3 703 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #