data_6AOH # _model_server_result.job_id 196yxqnHy4EKM2zDpsWHqA _model_server_result.datetime_utc '2024-11-12 20:57:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aoh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 6AOH # _exptl.entry_id 6AOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.431 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AOH _cell.length_a 53.209 _cell.length_b 144.343 _cell.length_c 174.189 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # _chem_comp.formula 'C19 H22 N8 O' _chem_comp.formula_weight 378.431 _chem_comp.id BOD _chem_comp.mon_nstd_flag . _chem_comp.name 5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 BOD doub 70 n y C7 C6 BOD sing 71 n y C8 C9 BOD sing 72 n y C14 C13 BOD sing 73 n n C14 N2 BOD sing 74 n n C6 C5 BOD doub 75 n y C13 N3 BOD sing 76 n n C9 N2 BOD sing 77 n n C9 C10 BOD doub 78 n y N2 C11 BOD sing 79 n n C5 C10 BOD sing 80 n y C5 C3 BOD sing 81 n n N6 C18 BOD sing 82 n n C2 C3 BOD doub 83 n y C2 N BOD sing 84 n y N3 C15 BOD sing 85 n n N3 C12 BOD sing 86 n n C11 C12 BOD sing 87 n n C3 C4 BOD sing 88 n y C18 C15 BOD doub 89 n y C18 N5 BOD sing 90 n y C15 C16 BOD sing 91 n y N C1 BOD doub 92 n y N5 C17 BOD doub 93 n y C4 N1 BOD doub 94 n y C16 N4 BOD doub 95 n y C1 N1 BOD sing 96 n y C1 O BOD sing 97 n n C17 N4 BOD sing 98 n y C17 N7 BOD sing 99 n n O C BOD sing 100 n n C16 H1 BOD sing 101 n n C12 H2 BOD sing 102 n n C12 H3 BOD sing 103 n n C11 H4 BOD sing 104 n n C11 H5 BOD sing 105 n n C13 H6 BOD sing 106 n n C13 H7 BOD sing 107 n n C8 H8 BOD sing 108 n n C6 H9 BOD sing 109 n n N7 H10 BOD sing 110 n n N7 H11 BOD sing 111 n n C4 H12 BOD sing 112 n n C2 H13 BOD sing 113 n n N6 H14 BOD sing 114 n n N6 H15 BOD sing 115 n n C14 H16 BOD sing 116 n n C14 H17 BOD sing 117 n n C7 H18 BOD sing 118 n n C10 H19 BOD sing 119 n n C H20 BOD sing 120 n n C H21 BOD sing 121 n n C H22 BOD sing 122 n n # _atom_sites.entry_id 6AOH _atom_sites.fract_transf_matrix[1][1] 0.018794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 BOD A 1 704 1 BOD 533 . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 BOD B 1 704 2 BOD 533 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 BOD . . . F 5 29.561 97.186 -72.504 1 34.67 ? C18 BOD 704 A 1 HETATM 2 C C17 BOD . . . F 5 29.4 95.466 -70.91 1 34.22 ? C17 BOD 704 A 1 HETATM 3 C C16 BOD . . . F 5 31.475 96.478 -71.25 1 34.48 ? C16 BOD 704 A 1 HETATM 4 C C12 BOD . . . F 5 32.691 98.972 -72.01 1 36.57 ? C12 BOD 704 A 1 HETATM 5 C C11 BOD . . . F 5 33.36 100.094 -72.794 1 37.44 ? C11 BOD 704 A 1 HETATM 6 C C9 BOD . . . F 5 35.123 99.038 -74.202 1 38.74 ? C9 BOD 704 A 1 HETATM 7 N N5 BOD . . . F 5 28.831 96.261 -71.845 1 34.47 ? N5 BOD 704 A 1 HETATM 8 C C13 BOD . . . F 5 31.584 98.437 -74.315 1 36.12 ? C13 BOD 704 A 1 HETATM 9 C C8 BOD . . . F 5 35.446 98.384 -75.389 1 39.49 ? C8 BOD 704 A 1 HETATM 10 C C6 BOD . . . F 5 37.741 98.261 -74.71 1 40.38 ? C6 BOD 704 A 1 HETATM 11 N N7 BOD . . . F 5 28.647 94.546 -70.263 1 34.4 ? N7 BOD 704 A 1 HETATM 12 C C4 BOD . . . F 5 38.294 99.773 -71.397 1 41.71 ? C4 BOD 704 A 1 HETATM 13 N N1 BOD . . . F 5 39.346 99.959 -70.586 1 41.84 ? N1 BOD 704 A 1 HETATM 14 C C2 BOD . . . F 5 39.772 98.698 -72.959 1 41.53 ? C2 BOD 704 A 1 HETATM 15 C C3 BOD . . . F 5 38.484 99.131 -72.621 1 41.42 ? C3 BOD 704 A 1 HETATM 16 N N4 BOD . . . F 5 30.714 95.577 -70.617 1 34.07 ? N4 BOD 704 A 1 HETATM 17 N N6 BOD . . . F 5 28.933 97.954 -73.43 1 34.44 ? N6 BOD 704 A 1 HETATM 18 C C15 BOD . . . F 5 30.918 97.315 -72.217 1 34.86 ? C15 BOD 704 A 1 HETATM 19 N N3 BOD . . . F 5 31.739 98.254 -72.863 1 35.56 ? N3 BOD 704 A 1 HETATM 20 C C14 BOD . . . F 5 32.767 99.124 -75.001 1 36.79 ? C14 BOD 704 A 1 HETATM 21 N N2 BOD . . . F 5 33.784 99.413 -73.999 1 37.8 ? N2 BOD 704 A 1 HETATM 22 C C7 BOD . . . F 5 36.753 97.998 -75.653 1 40 ? C7 BOD 704 A 1 HETATM 23 C C10 BOD . . . F 5 36.121 99.302 -73.253 1 39.23 ? C10 BOD 704 A 1 HETATM 24 C C5 BOD . . . F 5 37.438 98.905 -73.51 1 40.45 ? C5 BOD 704 A 1 HETATM 25 N N BOD . . . F 5 40.798 98.903 -72.125 1 41.31 ? N BOD 704 A 1 HETATM 26 C C1 BOD . . . F 5 40.588 99.531 -70.943 1 41.88 ? C1 BOD 704 A 1 HETATM 27 O O BOD . . . F 5 41.66 99.724 -70.109 1 42.63 ? O BOD 704 A 1 HETATM 28 C C BOD . . . F 5 41.632 100.703 -69.056 1 42.83 ? C BOD 704 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #