data_6AOI # _model_server_result.job_id sQbDfnGDDR0QI3BP351W9A _model_server_result.datetime_utc '2024-11-24 02:03:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aoi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":702}' # _entry.id 6AOI # _exptl.entry_id 6AOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AOI _cell.length_a 53.437 _cell.length_b 145.053 _cell.length_c 174.503 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 344 n n PA O2A NDP sing 345 n n PA O5B NDP sing 346 n n PA O3 NDP sing 347 n n O2A HOA2 NDP sing 348 n n O5B C5B NDP sing 349 n n C5B C4B NDP sing 350 n n C5B H51A NDP sing 351 n n C5B H52A NDP sing 352 n n C4B O4B NDP sing 353 n n C4B C3B NDP sing 354 n n C4B H4B NDP sing 355 n n O4B C1B NDP sing 356 n n C3B O3B NDP sing 357 n n C3B C2B NDP sing 358 n n C3B H3B NDP sing 359 n n O3B HO3A NDP sing 360 n n C2B O2B NDP sing 361 n n C2B C1B NDP sing 362 n n C2B H2B NDP sing 363 n n O2B P2B NDP sing 364 n n C1B N9A NDP sing 365 n n C1B H1B NDP sing 366 n n N9A C8A NDP sing 367 n y N9A C4A NDP sing 368 n y C8A N7A NDP doub 369 n y C8A H8A NDP sing 370 n n N7A C5A NDP sing 371 n y C5A C6A NDP sing 372 n y C5A C4A NDP doub 373 n y C6A N6A NDP sing 374 n n C6A N1A NDP doub 375 n y N6A H61A NDP sing 376 n n N6A H62A NDP sing 377 n n N1A C2A NDP sing 378 n y C2A N3A NDP doub 379 n y C2A H2A NDP sing 380 n n N3A C4A NDP sing 381 n y O3 PN NDP sing 382 n n PN O1N NDP doub 383 n n PN O2N NDP sing 384 n n PN O5D NDP sing 385 n n O2N H21N NDP sing 386 n n O5D C5D NDP sing 387 n n C5D C4D NDP sing 388 n n C5D H51N NDP sing 389 n n C5D H52N NDP sing 390 n n C4D O4D NDP sing 391 n n C4D C3D NDP sing 392 n n C4D H4D NDP sing 393 n n O4D C1D NDP sing 394 n n C3D O3D NDP sing 395 n n C3D C2D NDP sing 396 n n C3D H3D NDP sing 397 n n O3D HO3N NDP sing 398 n n C2D O2D NDP sing 399 n n C2D C1D NDP sing 400 n n C2D H2D NDP sing 401 n n O2D HO2N NDP sing 402 n n C1D N1N NDP sing 403 n n C1D H1D NDP sing 404 n n N1N C2N NDP sing 405 n n N1N C6N NDP sing 406 n n C2N C3N NDP doub 407 n n C2N H2N NDP sing 408 n n C3N C7N NDP sing 409 n n C3N C4N NDP sing 410 n n C7N O7N NDP doub 411 n n C7N N7N NDP sing 412 n n N7N H71N NDP sing 413 n n N7N H72N NDP sing 414 n n C4N C5N NDP sing 415 n n C4N H41N NDP sing 416 n n C4N H42N NDP sing 417 n n C5N C6N NDP doub 418 n n C5N H5N NDP sing 419 n n C6N H6N NDP sing 420 n n P2B O1X NDP doub 421 n n P2B O2X NDP sing 422 n n P2B O3X NDP sing 423 n n O2X HOP2 NDP sing 424 n n O3X HOP3 NDP sing 425 n n # _atom_sites.entry_id 6AOI _atom_sites.fract_transf_matrix[1][1] 0.018714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 BOJ A 1 704 1 BOJ 528 . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 BOJ B 1 704 2 BOJ 528 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 3 3.179 28.79 -68.364 1 122.14 ? PA NDP 702 B 1 HETATM 2 O O1A NDP . . . H 3 2.462 30.062 -67.981 1 119.37 ? O1A NDP 702 B 1 HETATM 3 O O2A NDP . . . H 3 4.541 28.827 -69.017 1 117.88 ? O2A NDP 702 B 1 HETATM 4 O O5B NDP . . . H 3 2.199 27.987 -69.349 1 128.14 ? O5B NDP 702 B 1 HETATM 5 C C5B NDP . . . H 3 2.331 26.577 -69.495 1 134.47 ? C5B NDP 702 B 1 HETATM 6 C C4B NDP . . . H 3 1.199 26.056 -70.37 1 137.59 ? C4B NDP 702 B 1 HETATM 7 O O4B NDP . . . H 3 0.835 27.026 -71.362 1 136.46 ? O4B NDP 702 B 1 HETATM 8 C C3B NDP . . . H 3 1.635 24.804 -71.108 1 138.52 ? C3B NDP 702 B 1 HETATM 9 O O3B NDP . . . H 3 1.071 23.641 -70.495 1 138.52 ? O3B NDP 702 B 1 HETATM 10 C C2B NDP . . . H 3 1.171 25.012 -72.541 1 141.11 ? C2B NDP 702 B 1 HETATM 11 O O2B NDP . . . H 3 -0.115 24.436 -72.781 1 146.07 ? O2B NDP 702 B 1 HETATM 12 C C1B NDP . . . H 3 1.078 26.522 -72.68 1 138.91 ? C1B NDP 702 B 1 HETATM 13 N N9A NDP . . . H 3 2.374 27.038 -73.2 1 139.13 ? N9A NDP 702 B 1 HETATM 14 C C8A NDP . . . H 3 3.313 27.7 -72.491 1 138.43 ? C8A NDP 702 B 1 HETATM 15 N N7A NDP . . . H 3 4.382 28.025 -73.256 1 140.24 ? N7A NDP 702 B 1 HETATM 16 C C5A NDP . . . H 3 4.137 27.565 -74.495 1 143.34 ? C5A NDP 702 B 1 HETATM 17 C C6A NDP . . . H 3 4.85 27.569 -75.798 1 146.13 ? C6A NDP 702 B 1 HETATM 18 N N6A NDP . . . H 3 6.07 28.148 -75.921 1 146.43 ? N6A NDP 702 B 1 HETATM 19 N N1A NDP . . . H 3 4.24 26.975 -76.855 1 146.43 ? N1A NDP 702 B 1 HETATM 20 C C2A NDP . . . H 3 3.025 26.396 -76.747 1 143.13 ? C2A NDP 702 B 1 HETATM 21 N N3A NDP . . . H 3 2.323 26.357 -75.595 1 142.03 ? N3A NDP 702 B 1 HETATM 22 C C4A NDP . . . H 3 2.814 26.913 -74.456 1 141.88 ? C4A NDP 702 B 1 HETATM 23 O O3 NDP . . . H 3 3.246 27.826 -67.069 1 117.25 ? O3 NDP 702 B 1 HETATM 24 P PN NDP . . . H 3 4.283 28.042 -65.853 1 111.4 ? PN NDP 702 B 1 HETATM 25 O O1N NDP . . . H 3 3.947 27.037 -64.773 1 110.4 ? O1N NDP 702 B 1 HETATM 26 O O2N NDP . . . H 3 5.684 28.085 -66.417 1 107.03 ? O2N NDP 702 B 1 HETATM 27 O O5D NDP . . . H 3 3.902 29.514 -65.322 1 107.64 ? O5D NDP 702 B 1 HETATM 28 C C5D NDP . . . H 3 2.978 29.683 -64.251 1 103.56 ? C5D NDP 702 B 1 HETATM 29 C C4D NDP . . . H 3 3.755 29.786 -62.942 1 103.86 ? C4D NDP 702 B 1 HETATM 30 O O4D NDP . . . H 3 4.707 30.854 -63.008 1 101.78 ? O4D NDP 702 B 1 HETATM 31 C C3D NDP . . . H 3 2.829 30.094 -61.779 1 101.71 ? C3D NDP 702 B 1 HETATM 32 O O3D NDP . . . H 3 3.329 29.418 -60.618 1 101.2 ? O3D NDP 702 B 1 HETATM 33 C C2D NDP . . . H 3 2.937 31.598 -61.612 1 98.86 ? C2D NDP 702 B 1 HETATM 34 O O2D NDP . . . H 3 2.773 31.997 -60.255 1 96.99 ? O2D NDP 702 B 1 HETATM 35 C C1D NDP . . . H 3 4.351 31.894 -62.084 1 101.52 ? C1D NDP 702 B 1 HETATM 36 N N1N NDP . . . H 3 4.475 33.201 -62.731 1 104.46 ? N1N NDP 702 B 1 HETATM 37 C C2N NDP . . . H 3 5.315 34.088 -62.182 1 106.86 ? C2N NDP 702 B 1 HETATM 38 C C3N NDP . . . H 3 5.518 35.352 -62.729 1 106.71 ? C3N NDP 702 B 1 HETATM 39 C C7N NDP . . . H 3 6.472 36.302 -62.058 1 106.6 ? C7N NDP 702 B 1 HETATM 40 O O7N NDP . . . H 3 6.741 37.368 -62.59 1 109.47 ? O7N NDP 702 B 1 HETATM 41 N N7N NDP . . . H 3 7.008 35.956 -60.886 1 102.96 ? N7N NDP 702 B 1 HETATM 42 C C4N NDP . . . H 3 4.789 35.768 -63.99 1 104.89 ? C4N NDP 702 B 1 HETATM 43 C C5N NDP . . . H 3 3.902 34.717 -64.485 1 105.05 ? C5N NDP 702 B 1 HETATM 44 C C6N NDP . . . H 3 3.787 33.485 -63.85 1 105.58 ? C6N NDP 702 B 1 HETATM 45 P P2B NDP . . . H 3 -0.296 22.931 -73.344 1 152.77 ? P2B NDP 702 B 1 HETATM 46 O O1X NDP . . . H 3 0.067 22.05 -72.172 1 153.07 ? O1X NDP 702 B 1 HETATM 47 O O2X NDP . . . H 3 -1.749 22.83 -73.74 1 151.96 ? O2X NDP 702 B 1 HETATM 48 O O3X NDP . . . H 3 0.65 22.851 -74.519 1 153.35 ? O3X NDP 702 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #