data_6AP1 # _model_server_result.job_id 0A5Xcy2rkysKPzPobgKIhQ _model_server_result.datetime_utc '2025-04-24 01:56:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ap1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":702}' # _entry.id 6AP1 # _exptl.entry_id 6AP1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AP1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 V N N ? 6 Y N N ? 6 BA N N ? 6 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 142 A ARG 241 1_555 G CB LYS 106 F LYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? covale ? covale2 F C ACE 1 G ACE 0 1_555 F N ASP 2 G ASP 165 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 F C LEU 9 G LEU 172 1_555 F N NH2 10 G NH2 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 G CD1 ILE 255 F ILE 354 1_555 G CA GLU 299 F GLU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.198 ? covale ? covale5 G CD1 ILE 255 F ILE 354 1_555 G CB GLU 299 F GLU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.573 ? metalc ? metalc1 A OG SER 81 A SER 180 1_555 V MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 T O3B ADP . A ADP 701 1_555 U BE BEF . A BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.553 ? metalc ? metalc3 T O2B ADP . A ADP 701 1_555 V MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 B OG SER 81 B SER 180 1_555 Y MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 W O1B ADP . B ADP 701 1_555 X BE BEF . B BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? metalc ? metalc6 W O2B ADP . B ADP 701 1_555 Y MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 C OG SER 81 C SER 180 1_555 BA MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 Z O1B ADP . C ADP 701 1_555 AA BE BEF . C BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? metalc ? metalc9 Z O2B ADP . C ADP 701 1_555 BA MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc10 D OG SER 81 D SER 180 1_555 DA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc11 CA O2B ADP . D ADP 701 1_555 DA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AP1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 4 ADP A 1 701 501 ADP ADP . U 5 BEF A 1 702 502 BEF BEF . V 6 MG A 1 703 503 MG MG . W 4 ADP B 1 701 501 ADP ADP . X 5 BEF B 1 702 502 BEF BEF . Y 6 MG B 1 703 503 MG MG . Z 4 ADP C 1 701 501 ADP ADP . AA 5 BEF C 1 702 502 BEF BEF . BA 6 MG C 1 703 503 MG MG . CA 4 ADP D 1 701 501 ADP ADP . DA 6 MG D 1 702 502 MG MG . EA 4 ADP E 1 701 501 ADP ADP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 6 _atom_site.Cartn_x 172.357 _atom_site.Cartn_y 135.697 _atom_site.Cartn_z 128.857 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 105.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 702 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #