data_6AP4 # _model_server_result.job_id bCv34SbGQdJ-VkCMsUiPTg _model_server_result.datetime_utc '2025-04-26 11:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ap4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":401}' # _entry.id 6AP4 # _exptl.entry_id 6AP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.53 _cell.angle_gamma 90 _cell.entry_id 6AP4 _cell.length_a 72.713 _cell.length_b 328.597 _cell.length_c 147.497 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 ? dimeric 2 author_defined_assembly 5 ? dimeric 2 author_defined_assembly 6 ? dimeric 2 author_defined_assembly 7 ? dimeric 2 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,S,T 1 1 C,D,Q,U,V 2 1 E,F,W,X 3 1 G,H,Y,Z 4 1 I,J,R,AA,BA 5 1 K,L,CA,DA 6 1 M,N,EA,FA 7 1 O,P,GA,HA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AP4 _atom_sites.fract_transf_matrix[1][1] 0.013753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000368 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 MG C 1 401 2 MG MG . R 2 MG J 1 401 3 MG MG . S 3 HOH A 1 401 23 HOH HOH . S 3 HOH A 2 402 445 HOH HOH . S 3 HOH A 3 403 307 HOH HOH . S 3 HOH A 4 404 221 HOH HOH . S 3 HOH A 5 405 80 HOH HOH . S 3 HOH A 6 406 331 HOH HOH . S 3 HOH A 7 407 431 HOH HOH . S 3 HOH A 8 408 166 HOH HOH . S 3 HOH A 9 409 165 HOH HOH . S 3 HOH A 10 410 396 HOH HOH . S 3 HOH A 11 411 57 HOH HOH . S 3 HOH A 12 412 367 HOH HOH . S 3 HOH A 13 413 395 HOH HOH . S 3 HOH A 14 414 262 HOH HOH . T 3 HOH B 1 401 252 HOH HOH . T 3 HOH B 2 402 167 HOH HOH . T 3 HOH B 3 403 103 HOH HOH . T 3 HOH B 4 404 327 HOH HOH . T 3 HOH B 5 405 45 HOH HOH . T 3 HOH B 6 406 87 HOH HOH . T 3 HOH B 7 407 117 HOH HOH . T 3 HOH B 8 408 54 HOH HOH . T 3 HOH B 9 409 28 HOH HOH . T 3 HOH B 10 410 303 HOH HOH . T 3 HOH B 11 411 128 HOH HOH . T 3 HOH B 12 412 480 HOH HOH . T 3 HOH B 13 413 325 HOH HOH . T 3 HOH B 14 414 492 HOH HOH . U 3 HOH C 1 501 335 HOH HOH . U 3 HOH C 2 502 105 HOH HOH . U 3 HOH C 3 503 11 HOH HOH . U 3 HOH C 4 504 215 HOH HOH . U 3 HOH C 5 505 489 HOH HOH . U 3 HOH C 6 506 181 HOH HOH . U 3 HOH C 7 507 197 HOH HOH . U 3 HOH C 8 508 482 HOH HOH . U 3 HOH C 9 509 350 HOH HOH . U 3 HOH C 10 510 466 HOH HOH . U 3 HOH C 11 511 375 HOH HOH . U 3 HOH C 12 512 248 HOH HOH . U 3 HOH C 13 513 442 HOH HOH . U 3 HOH C 14 514 121 HOH HOH . U 3 HOH C 15 515 220 HOH HOH . V 3 HOH D 1 401 120 HOH HOH . V 3 HOH D 2 402 140 HOH HOH . V 3 HOH D 3 403 17 HOH HOH . V 3 HOH D 4 404 34 HOH HOH . V 3 HOH D 5 405 136 HOH HOH . V 3 HOH D 6 406 255 HOH HOH . V 3 HOH D 7 407 273 HOH HOH . V 3 HOH D 8 408 264 HOH HOH . V 3 HOH D 9 409 256 HOH HOH . V 3 HOH D 10 410 419 HOH HOH . V 3 HOH D 11 411 460 HOH HOH . V 3 HOH D 12 412 208 HOH HOH . V 3 HOH D 13 413 238 HOH HOH . V 3 HOH D 14 414 77 HOH HOH . V 3 HOH D 15 415 270 HOH HOH . V 3 HOH D 16 416 112 HOH HOH . V 3 HOH D 17 417 48 HOH HOH . V 3 HOH D 18 418 245 HOH HOH . V 3 HOH D 19 419 387 HOH HOH . V 3 HOH D 20 420 96 HOH HOH . V 3 HOH D 21 421 351 HOH HOH . V 3 HOH D 22 422 455 HOH HOH . V 3 HOH D 23 423 352 HOH HOH . V 3 HOH D 24 424 314 HOH HOH . V 3 HOH D 25 425 399 HOH HOH . V 3 HOH D 26 426 239 HOH HOH . V 3 HOH D 27 427 464 HOH HOH . V 3 HOH D 28 428 129 HOH HOH . V 3 HOH D 29 429 115 HOH HOH . V 3 HOH D 30 430 76 HOH HOH . W 3 HOH E 1 401 184 HOH HOH . W 3 HOH E 2 402 251 HOH HOH . W 3 HOH E 3 403 474 HOH HOH . W 3 HOH E 4 404 219 HOH HOH . W 3 HOH E 5 405 177 HOH HOH . W 3 HOH E 6 406 295 HOH HOH . W 3 HOH E 7 407 217 HOH HOH . W 3 HOH E 8 408 370 HOH HOH . W 3 HOH E 9 409 222 HOH HOH . W 3 HOH E 10 410 97 HOH HOH . W 3 HOH E 11 411 168 HOH HOH . W 3 HOH E 12 412 451 HOH HOH . W 3 HOH E 13 413 203 HOH HOH . W 3 HOH E 14 414 124 HOH HOH . W 3 HOH E 15 415 84 HOH HOH . W 3 HOH E 16 416 391 HOH HOH . W 3 HOH E 17 417 493 HOH HOH . W 3 HOH E 18 418 37 HOH HOH . W 3 HOH E 19 419 164 HOH HOH . W 3 HOH E 20 420 31 HOH HOH . W 3 HOH E 21 421 149 HOH HOH . W 3 HOH E 22 422 365 HOH HOH . W 3 HOH E 23 423 496 HOH HOH . W 3 HOH E 24 424 68 HOH HOH . W 3 HOH E 25 425 111 HOH HOH . W 3 HOH E 26 426 309 HOH HOH . W 3 HOH E 27 427 393 HOH HOH . W 3 HOH E 28 428 421 HOH HOH . W 3 HOH E 29 429 51 HOH HOH . W 3 HOH E 30 430 272 HOH HOH . W 3 HOH E 31 431 378 HOH HOH . W 3 HOH E 32 432 363 HOH HOH . W 3 HOH E 33 433 356 HOH HOH . W 3 HOH E 34 434 78 HOH HOH . W 3 HOH E 35 435 376 HOH HOH . W 3 HOH E 36 436 67 HOH HOH . W 3 HOH E 37 437 469 HOH HOH . W 3 HOH E 38 438 326 HOH HOH . W 3 HOH E 39 439 461 HOH HOH . W 3 HOH E 40 440 435 HOH HOH . W 3 HOH E 41 441 289 HOH HOH . W 3 HOH E 42 442 231 HOH HOH . W 3 HOH E 43 443 285 HOH HOH . W 3 HOH E 44 444 430 HOH HOH . W 3 HOH E 45 445 398 HOH HOH . W 3 HOH E 46 446 437 HOH HOH . W 3 HOH E 47 447 247 HOH HOH . X 3 HOH F 1 401 25 HOH HOH . X 3 HOH F 2 402 456 HOH HOH . X 3 HOH F 3 403 179 HOH HOH . X 3 HOH F 4 404 266 HOH HOH . X 3 HOH F 5 405 265 HOH HOH . X 3 HOH F 6 406 246 HOH HOH . X 3 HOH F 7 407 132 HOH HOH . X 3 HOH F 8 408 81 HOH HOH . X 3 HOH F 9 409 340 HOH HOH . X 3 HOH F 10 410 160 HOH HOH . X 3 HOH F 11 411 278 HOH HOH . Y 3 HOH G 1 401 306 HOH HOH . Y 3 HOH G 2 402 401 HOH HOH . Y 3 HOH G 3 403 113 HOH HOH . Y 3 HOH G 4 404 429 HOH HOH . Y 3 HOH G 5 405 4 HOH HOH . Y 3 HOH G 6 406 495 HOH HOH . Y 3 HOH G 7 407 137 HOH HOH . Y 3 HOH G 8 408 226 HOH HOH . Y 3 HOH G 9 409 200 HOH HOH . Y 3 HOH G 10 410 29 HOH HOH . Y 3 HOH G 11 411 478 HOH HOH . Y 3 HOH G 12 412 62 HOH HOH . Y 3 HOH G 13 413 329 HOH HOH . Y 3 HOH G 14 414 275 HOH HOH . Y 3 HOH G 15 415 347 HOH HOH . Y 3 HOH G 16 416 145 HOH HOH . Y 3 HOH G 17 417 484 HOH HOH . Y 3 HOH G 18 418 148 HOH HOH . Y 3 HOH G 19 419 70 HOH HOH . Y 3 HOH G 20 420 198 HOH HOH . Y 3 HOH G 21 421 100 HOH HOH . Y 3 HOH G 22 422 280 HOH HOH . Z 3 HOH H 1 401 296 HOH HOH . Z 3 HOH H 2 402 494 HOH HOH . Z 3 HOH H 3 403 153 HOH HOH . Z 3 HOH H 4 404 288 HOH HOH . Z 3 HOH H 5 405 18 HOH HOH . Z 3 HOH H 6 406 186 HOH HOH . Z 3 HOH H 7 407 133 HOH HOH . Z 3 HOH H 8 408 433 HOH HOH . AA 3 HOH I 1 401 276 HOH HOH . AA 3 HOH I 2 402 291 HOH HOH . AA 3 HOH I 3 403 481 HOH HOH . AA 3 HOH I 4 404 101 HOH HOH . AA 3 HOH I 5 405 497 HOH HOH . BA 3 HOH J 1 501 1 HOH HOH . BA 3 HOH J 2 502 225 HOH HOH . BA 3 HOH J 3 503 463 HOH HOH . BA 3 HOH J 4 504 119 HOH HOH . BA 3 HOH J 5 505 151 HOH HOH . BA 3 HOH J 6 506 53 HOH HOH . BA 3 HOH J 7 507 298 HOH HOH . BA 3 HOH J 8 508 69 HOH HOH . BA 3 HOH J 9 509 425 HOH HOH . BA 3 HOH J 10 510 491 HOH HOH . BA 3 HOH J 11 511 424 HOH HOH . BA 3 HOH J 12 512 178 HOH HOH . BA 3 HOH J 13 513 139 HOH HOH . BA 3 HOH J 14 514 488 HOH HOH . BA 3 HOH J 15 515 487 HOH HOH . BA 3 HOH J 16 516 477 HOH HOH . BA 3 HOH J 17 517 60 HOH HOH . CA 3 HOH K 1 401 143 HOH HOH . CA 3 HOH K 2 402 3 HOH HOH . CA 3 HOH K 3 403 118 HOH HOH . CA 3 HOH K 4 404 141 HOH HOH . CA 3 HOH K 5 405 44 HOH HOH . CA 3 HOH K 6 406 468 HOH HOH . CA 3 HOH K 7 407 38 HOH HOH . CA 3 HOH K 8 408 438 HOH HOH . CA 3 HOH K 9 409 91 HOH HOH . DA 3 HOH L 1 401 416 HOH HOH . DA 3 HOH L 2 402 362 HOH HOH . DA 3 HOH L 3 403 66 HOH HOH . DA 3 HOH L 4 404 483 HOH HOH . DA 3 HOH L 5 405 47 HOH HOH . DA 3 HOH L 6 406 297 HOH HOH . DA 3 HOH L 7 407 415 HOH HOH . DA 3 HOH L 8 408 201 HOH HOH . DA 3 HOH L 9 409 479 HOH HOH . DA 3 HOH L 10 410 250 HOH HOH . EA 3 HOH M 1 401 490 HOH HOH . EA 3 HOH M 2 402 452 HOH HOH . EA 3 HOH M 3 403 319 HOH HOH . EA 3 HOH M 4 404 336 HOH HOH . EA 3 HOH M 5 405 16 HOH HOH . EA 3 HOH M 6 406 75 HOH HOH . EA 3 HOH M 7 407 299 HOH HOH . EA 3 HOH M 8 408 268 HOH HOH . EA 3 HOH M 9 409 61 HOH HOH . EA 3 HOH M 10 410 204 HOH HOH . EA 3 HOH M 11 411 158 HOH HOH . EA 3 HOH M 12 412 131 HOH HOH . EA 3 HOH M 13 413 213 HOH HOH . EA 3 HOH M 14 414 279 HOH HOH . EA 3 HOH M 15 415 253 HOH HOH . EA 3 HOH M 16 416 449 HOH HOH . EA 3 HOH M 17 417 392 HOH HOH . EA 3 HOH M 18 418 486 HOH HOH . FA 3 HOH N 1 401 2 HOH HOH . FA 3 HOH N 2 402 397 HOH HOH . FA 3 HOH N 3 403 324 HOH HOH . FA 3 HOH N 4 404 294 HOH HOH . FA 3 HOH N 5 405 189 HOH HOH . FA 3 HOH N 6 406 259 HOH HOH . FA 3 HOH N 7 407 400 HOH HOH . FA 3 HOH N 8 408 183 HOH HOH . FA 3 HOH N 9 409 36 HOH HOH . GA 3 HOH O 1 401 26 HOH HOH . GA 3 HOH O 2 402 39 HOH HOH . GA 3 HOH O 3 403 450 HOH HOH . GA 3 HOH O 4 404 209 HOH HOH . GA 3 HOH O 5 405 383 HOH HOH . GA 3 HOH O 6 406 441 HOH HOH . HA 3 HOH P 1 401 109 HOH HOH . HA 3 HOH P 2 402 172 HOH HOH . HA 3 HOH P 3 403 194 HOH HOH . HA 3 HOH P 4 404 439 HOH HOH . HA 3 HOH P 5 405 290 HOH HOH . HA 3 HOH P 6 406 202 HOH HOH . HA 3 HOH P 7 407 157 HOH HOH . HA 3 HOH P 8 408 357 HOH HOH . HA 3 HOH P 9 409 330 HOH HOH . HA 3 HOH P 10 410 41 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 2 _atom_site.Cartn_x 208.697 _atom_site.Cartn_y -59.967 _atom_site.Cartn_z 987.588 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id J _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #