data_6AQ3
#
_model_server_result.job_id            gzq5Em1knCkgkSfMZS_jpA 
_model_server_result.datetime_utc      '2025-07-01 13:17:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6aq3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":204}' 
#
_entry.id    6AQ3 
#
_exptl.entry_id    6AQ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         114.55 
_cell.angle_beta          87.67 
_cell.angle_gamma         95.02 
_cell.entry_id            6AQ3 
_cell.length_a            53.64 
_cell.length_b            78.67 
_cell.length_c            80.57 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AQ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G,H,I,N,O,X,Z 1 1 
B,D,J,K,L,M,P,Q,Y,AA 2 1 
E,F,R,S,T,U,V,W,BA,CA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 82 A CYS 74 1_555 G C1 PLM . A PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
covale ? covale2 B SG CYS 82 B CYS 74 1_555 J C1 PLM . B PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
covale ? covale3 C SG CYS 82 C CYS 74 1_555 N C1 PLM . C PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale4 D SG CYS 82 D CYS 74 1_555 P C1 PLM . D PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
covale ? covale5 E SG CYS 82 E CYS 74 1_555 R C1 PLM . E PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
covale ? covale6 F SG CYS 82 F CYS 74 1_555 V C1 PLM . F PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6AQ3 
_atom_sites.fract_transf_matrix[1][1]    0.018643 
_atom_sites.fract_transf_matrix[1][2]    0.001639 
_atom_sites.fract_transf_matrix[1][3]    -0.000088 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01276 
_atom_sites.fract_transf_matrix[2][3]    0.005801 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013645 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PLM A 1 201 201 PLM PLM . 
H 3 EDO A 1 202 202 EDO EDO . 
I 3 EDO A 1 203 203 EDO EDO . 
J 2 PLM B 1 201 201 PLM PLM . 
K 3 EDO B 1 202 202 EDO EDO . 
L 3 EDO B 1 203 203 EDO EDO . 
M 3 EDO B 1 204 202 EDO EDO . 
N 2 PLM C 1 201 201 PLM PLM . 
O 3 EDO C 1 202 203 EDO EDO . 
P 2 PLM D 1 201 201 PLM PLM . 
Q 3 EDO D 1 202 203 EDO EDO . 
R 2 PLM E 1 201 201 PLM PLM . 
S 3 EDO E 1 202 203 EDO EDO . 
T 3 EDO E 1 203 202 EDO EDO . 
U 3 EDO F 1 201 202 EDO EDO . 
V 2 PLM F 1 202 201 PLM PLM . 
W 3 EDO F 1 203 203 EDO EDO . 
X 4 HOH A 1 301 10 HOH HOH . 
X 4 HOH A 2 302 25 HOH HOH . 
X 4 HOH A 3 303 23 HOH HOH . 
X 4 HOH A 4 304 79 HOH HOH . 
X 4 HOH A 5 305 75 HOH HOH . 
X 4 HOH A 6 306 24 HOH HOH . 
X 4 HOH A 7 307 59 HOH HOH . 
X 4 HOH A 8 308 74 HOH HOH . 
X 4 HOH A 9 309 119 HOH HOH . 
X 4 HOH A 10 310 80 HOH HOH . 
X 4 HOH A 11 311 21 HOH HOH . 
X 4 HOH A 12 312 72 HOH HOH . 
X 4 HOH A 13 313 78 HOH HOH . 
X 4 HOH A 14 314 63 HOH HOH . 
X 4 HOH A 15 315 56 HOH HOH . 
X 4 HOH A 16 316 77 HOH HOH . 
X 4 HOH A 17 317 76 HOH HOH . 
X 4 HOH A 18 318 8 HOH HOH . 
X 4 HOH A 19 319 73 HOH HOH . 
X 4 HOH A 20 320 20 HOH HOH . 
X 4 HOH A 21 321 64 HOH HOH . 
Y 4 HOH B 1 301 39 HOH HOH . 
Y 4 HOH B 2 302 86 HOH HOH . 
Y 4 HOH B 3 303 16 HOH HOH . 
Y 4 HOH B 4 304 93 HOH HOH . 
Y 4 HOH B 5 305 83 HOH HOH . 
Y 4 HOH B 6 306 45 HOH HOH . 
Y 4 HOH B 7 307 29 HOH HOH . 
Y 4 HOH B 8 308 28 HOH HOH . 
Y 4 HOH B 9 309 48 HOH HOH . 
Y 4 HOH B 10 310 91 HOH HOH . 
Y 4 HOH B 11 311 14 HOH HOH . 
Y 4 HOH B 12 312 15 HOH HOH . 
Y 4 HOH B 13 313 101 HOH HOH . 
Y 4 HOH B 14 314 89 HOH HOH . 
Y 4 HOH B 15 315 90 HOH HOH . 
Y 4 HOH B 16 316 3 HOH HOH . 
Y 4 HOH B 17 317 82 HOH HOH . 
Y 4 HOH B 18 318 11 HOH HOH . 
Y 4 HOH B 19 319 6 HOH HOH . 
Y 4 HOH B 20 320 88 HOH HOH . 
Y 4 HOH B 21 321 92 HOH HOH . 
Y 4 HOH B 22 322 94 HOH HOH . 
Y 4 HOH B 23 323 49 HOH HOH . 
Y 4 HOH B 24 324 84 HOH HOH . 
Y 4 HOH B 25 325 46 HOH HOH . 
Z 4 HOH C 1 301 96 HOH HOH . 
Z 4 HOH C 2 302 62 HOH HOH . 
Z 4 HOH C 3 303 31 HOH HOH . 
Z 4 HOH C 4 304 115 HOH HOH . 
Z 4 HOH C 5 305 35 HOH HOH . 
Z 4 HOH C 6 306 37 HOH HOH . 
Z 4 HOH C 7 307 33 HOH HOH . 
Z 4 HOH C 8 308 13 HOH HOH . 
Z 4 HOH C 9 309 36 HOH HOH . 
Z 4 HOH C 10 310 9 HOH HOH . 
Z 4 HOH C 11 311 67 HOH HOH . 
Z 4 HOH C 12 312 34 HOH HOH . 
Z 4 HOH C 13 313 32 HOH HOH . 
Z 4 HOH C 14 314 95 HOH HOH . 
Z 4 HOH C 15 315 116 HOH HOH . 
Z 4 HOH C 16 316 30 HOH HOH . 
Z 4 HOH C 17 317 97 HOH HOH . 
Z 4 HOH C 18 318 2 HOH HOH . 
Z 4 HOH C 19 319 120 HOH HOH . 
AA 4 HOH D 1 301 52 HOH HOH . 
AA 4 HOH D 2 302 102 HOH HOH . 
AA 4 HOH D 3 303 22 HOH HOH . 
AA 4 HOH D 4 304 60 HOH HOH . 
AA 4 HOH D 5 305 40 HOH HOH . 
AA 4 HOH D 6 306 26 HOH HOH . 
AA 4 HOH D 7 307 98 HOH HOH . 
AA 4 HOH D 8 308 5 HOH HOH . 
AA 4 HOH D 9 309 100 HOH HOH . 
AA 4 HOH D 10 310 99 HOH HOH . 
AA 4 HOH D 11 311 51 HOH HOH . 
AA 4 HOH D 12 312 103 HOH HOH . 
BA 4 HOH E 1 301 112 HOH HOH . 
BA 4 HOH E 2 302 105 HOH HOH . 
BA 4 HOH E 3 303 54 HOH HOH . 
BA 4 HOH E 4 304 106 HOH HOH . 
BA 4 HOH E 5 305 111 HOH HOH . 
BA 4 HOH E 6 306 107 HOH HOH . 
BA 4 HOH E 7 307 109 HOH HOH . 
BA 4 HOH E 8 308 108 HOH HOH . 
BA 4 HOH E 9 309 61 HOH HOH . 
BA 4 HOH E 10 310 110 HOH HOH . 
BA 4 HOH E 11 311 53 HOH HOH . 
BA 4 HOH E 12 312 57 HOH HOH . 
BA 4 HOH E 13 313 65 HOH HOH . 
BA 4 HOH E 14 314 104 HOH HOH . 
BA 4 HOH E 15 315 55 HOH HOH . 
CA 4 HOH F 1 301 81 HOH HOH . 
CA 4 HOH F 2 302 18 HOH HOH . 
CA 4 HOH F 3 303 44 HOH HOH . 
CA 4 HOH F 4 304 42 HOH HOH . 
CA 4 HOH F 5 305 43 HOH HOH . 
CA 4 HOH F 6 306 87 HOH HOH . 
CA 4 HOH F 7 307 4 HOH HOH . 
CA 4 HOH F 8 308 50 HOH HOH . 
CA 4 HOH F 9 309 7 HOH HOH . 
CA 4 HOH F 10 310 66 HOH HOH . 
CA 4 HOH F 11 311 1 HOH HOH . 
CA 4 HOH F 12 312 113 HOH HOH . 
CA 4 HOH F 13 313 58 HOH HOH . 
CA 4 HOH F 14 314 17 HOH HOH . 
CA 4 HOH F 15 315 41 HOH HOH . 
CA 4 HOH F 16 316 70 HOH HOH . 
CA 4 HOH F 17 317 114 HOH HOH . 
CA 4 HOH F 18 318 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 3 30.707 -20.619 29.338 1 63.63 ? C1 EDO 204 B 1 
HETATM 2 O O1 EDO . . . M 3 29.925 -19.466 29.638 1 70.04 ? O1 EDO 204 B 1 
HETATM 3 C C2 EDO . . . M 3 30.252 -21.229 28.018 1 62.28 ? C2 EDO 204 B 1 
HETATM 4 O O2 EDO . . . M 3 30.994 -20.647 26.939 1 66.16 ? O2 EDO 204 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#