data_6AQF # _model_server_result.job_id yVisyKw-pwzQfMszPg120Q _model_server_result.datetime_utc '2024-11-08 14:38:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 6AQF # _exptl.entry_id 6AQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AQF _cell.length_a 39.837 _cell.length_b 180.973 _cell.length_c 140.574 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 367 n n C1 O20 OLB sing 368 n n C2 C1 OLB sing 369 n n C3 C2 OLB sing 370 n n C4 C3 OLB sing 371 n n C5 C4 OLB sing 372 n n C5 C6 OLB sing 373 n n O20 C21 OLB sing 374 n n C21 C22 OLB sing 375 n n C22 C24 OLB sing 376 n n O23 C22 OLB sing 377 n n C24 O25 OLB sing 378 n n C6 C7 OLB sing 379 n n C7 C8 OLB sing 380 n n C8 C9 OLB sing 381 n n C9 C10 OLB doub 382 z n C10 C11 OLB sing 383 n n C2 H2 OLB sing 384 n n C2 H2A OLB sing 385 n n C3 H3 OLB sing 386 n n C3 H3A OLB sing 387 n n C4 H4 OLB sing 388 n n C4 H4A OLB sing 389 n n C5 H5 OLB sing 390 n n C5 H5A OLB sing 391 n n C21 H21 OLB sing 392 n n C21 H21A OLB sing 393 n n C22 H22 OLB sing 394 n n O23 HO23 OLB sing 395 n n C24 H24 OLB sing 396 n n C24 H24A OLB sing 397 n n O25 HO25 OLB sing 398 n n C6 H16 OLB sing 399 n n C6 H17 OLB sing 400 n n C7 H18 OLB sing 401 n n C7 H19 OLB sing 402 n n C8 H20 OLB sing 403 n n C8 H211 OLB sing 404 n n C9 H221 OLB sing 405 n n C10 H23 OLB sing 406 n n C11 H241 OLB sing 407 n n C11 H25 OLB sing 408 n n C11 C12 OLB sing 409 n n C12 H26 OLB sing 410 n n C12 C13 OLB sing 411 n n C12 H27 OLB sing 412 n n C13 C14 OLB sing 413 n n C13 H28 OLB sing 414 n n C13 H29 OLB sing 415 n n C14 H30 OLB sing 416 n n C14 H31 OLB sing 417 n n C14 C15 OLB sing 418 n n C15 C16 OLB sing 419 n n C15 H32 OLB sing 420 n n C15 H33 OLB sing 421 n n C16 H34 OLB sing 422 n n C16 H35 OLB sing 423 n n C16 C17 OLB sing 424 n n C17 C18 OLB sing 425 n n C17 H36 OLB sing 426 n n C17 H37 OLB sing 427 n n C18 H38 OLB sing 428 n n C18 H39 OLB sing 429 n n C18 H40 OLB sing 430 n n # _atom_sites.entry_id 6AQF _atom_sites.fract_transf_matrix[1][1] 0.025102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1 ZMA ZMA . C 3 CLR A 1 1202 1 CLR CLR . D 3 CLR A 1 1203 2 CLR CLR . E 3 CLR A 1 1204 3 CLR CLR . F 4 OLB A 1 1205 4 OLB OLB . G 5 OLA A 1 1206 11 OLA OLA . H 5 OLA A 1 1207 12 OLA OLA . I 5 OLA A 1 1208 13 OLA OLA . J 5 OLA A 1 1209 14 OLA OLA . K 5 OLA A 1 1210 15 OLA OLA . L 5 OLA A 1 1211 16 OLA OLA . M 5 OLA A 1 1212 17 OLA OLA . N 6 OLC A 1 1213 21 OLC OLC . O 6 OLC A 1 1214 22 OLC OLC . P 6 OLC A 1 1215 23 OLC OLC . Q 6 OLC A 1 1216 24 OLC OLC . R 7 HOH A 1 1301 2 HOH HOH . R 7 HOH A 2 1302 34 HOH HOH . R 7 HOH A 3 1303 42 HOH HOH . R 7 HOH A 4 1304 39 HOH HOH . R 7 HOH A 5 1305 4 HOH HOH . R 7 HOH A 6 1306 31 HOH HOH . R 7 HOH A 7 1307 44 HOH HOH . R 7 HOH A 8 1308 1 HOH HOH . R 7 HOH A 9 1309 33 HOH HOH . R 7 HOH A 10 1310 3 HOH HOH . R 7 HOH A 11 1311 40 HOH HOH . R 7 HOH A 12 1312 35 HOH HOH . R 7 HOH A 13 1313 37 HOH HOH . R 7 HOH A 14 1314 36 HOH HOH . R 7 HOH A 15 1315 41 HOH HOH . R 7 HOH A 16 1316 32 HOH HOH . R 7 HOH A 17 1317 5 HOH HOH . R 7 HOH A 18 1318 43 HOH HOH . R 7 HOH A 19 1319 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . F 4 7.014 176.952 33.321 1 86.8 ? C1 OLB 1205 A 1 HETATM 2 C C2 OLB . . . F 4 7.484 178.379 33.473 1 84.96 ? C2 OLB 1205 A 1 HETATM 3 C C3 OLB . . . F 4 7.849 178.945 32.106 1 83.34 ? C3 OLB 1205 A 1 HETATM 4 C C4 OLB . . . F 4 7.76 180.465 32.1 1 82.29 ? C4 OLB 1205 A 1 HETATM 5 C C5 OLB . . . F 4 8.836 181.073 31.208 1 81.06 ? C5 OLB 1205 A 1 HETATM 6 O O19 OLB . . . F 4 5.834 176.717 33.102 1 87.94 ? O19 OLB 1205 A 1 HETATM 7 O O20 OLB . . . F 4 7.9 175.929 33.41 1 87.02 ? O20 OLB 1205 A 1 HETATM 8 C C21 OLB . . . F 4 7.747 174.886 34.374 1 86.85 ? C21 OLB 1205 A 1 HETATM 9 C C22 OLB . . . F 4 7.272 173.619 33.676 1 87.23 ? C22 OLB 1205 A 1 HETATM 10 O O23 OLB . . . F 4 8.126 172.524 34.024 1 86.9 ? O23 OLB 1205 A 1 HETATM 11 C C24 OLB . . . F 4 5.845 173.314 34.115 1 88.47 ? C24 OLB 1205 A 1 HETATM 12 O O25 OLB . . . F 4 5.386 172.125 33.46 1 89.22 ? O25 OLB 1205 A 1 HETATM 13 C C6 OLB . . . F 4 9.604 182.166 31.939 1 80.57 ? C6 OLB 1205 A 1 HETATM 14 C C7 OLB . . . F 4 9.271 183.547 31.387 1 80.67 ? C7 OLB 1205 A 1 HETATM 15 C C8 OLB . . . F 4 9.259 184.598 32.494 1 80.52 ? C8 OLB 1205 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #