data_6AQH # _model_server_result.job_id A0IwsW-1GRgyRDqQu_p0ow _model_server_result.datetime_utc '2025-07-31 04:24:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6AQH # _exptl.entry_id 6AQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.34 _cell.angle_beta 96.45 _cell.angle_gamma 98.93 _cell.entry_id 6AQH _cell.length_a 53.46 _cell.length_b 88.16 _cell.length_c 123.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,O 1 1 B,G,H,I,J,P 2 1 C,K,L,Q 3 1 D,M,N,R 4 1 A,C,E,F,K,L,O,Q 5 1 B,D,G,H,I,J,M,N,P,R 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 K N N ? 2 M N N # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 246 n n N H LYS sing 247 n n N H2 LYS sing 248 n n CA C LYS sing 249 n n CA CB LYS sing 250 n n CA HA LYS sing 251 n n C O LYS doub 252 n n C OXT LYS sing 253 n n CB CG LYS sing 254 n n CB HB2 LYS sing 255 n n CB HB3 LYS sing 256 n n CG CD LYS sing 257 n n CG HG2 LYS sing 258 n n CG HG3 LYS sing 259 n n CD CE LYS sing 260 n n CD HD2 LYS sing 261 n n CD HD3 LYS sing 262 n n CE NZ LYS sing 263 n n CE HE2 LYS sing 264 n n CE HE3 LYS sing 265 n n NZ HZ1 LYS sing 266 n n NZ HZ2 LYS sing 267 n n NZ HZ3 LYS sing 268 n n OXT HXT LYS sing 269 n n # _atom_sites.entry_id 6AQH _atom_sites.fract_transf_matrix[1][1] 0.018706 _atom_sites.fract_transf_matrix[1][2] 0.00294 _atom_sites.fract_transf_matrix[1][3] 0.002347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011482 _atom_sites.fract_transf_matrix[2][3] 0.000887 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LYS A 1 601 601 LYS LYS . F 3 KRS A 1 602 602 KRS KRS . G 2 LYS B 1 601 601 LYS LYS . H 3 KRS B 1 602 602 KRS KRS . I 4 EDO B 1 603 1 EDO EDO . J 4 EDO B 1 604 2 EDO EDO . K 2 LYS C 1 601 601 LYS LYS . L 3 KRS C 1 602 602 KRS KRS . M 2 LYS D 1 601 601 LYS LYS . N 3 KRS D 1 602 602 KRS KRS . O 5 HOH A 1 701 178 HOH HOH . O 5 HOH A 2 702 167 HOH HOH . O 5 HOH A 3 703 37 HOH HOH . O 5 HOH A 4 704 165 HOH HOH . O 5 HOH A 5 705 150 HOH HOH . O 5 HOH A 6 706 88 HOH HOH . O 5 HOH A 7 707 169 HOH HOH . O 5 HOH A 8 708 177 HOH HOH . O 5 HOH A 9 709 176 HOH HOH . O 5 HOH A 10 710 101 HOH HOH . O 5 HOH A 11 711 94 HOH HOH . O 5 HOH A 12 712 102 HOH HOH . O 5 HOH A 13 713 78 HOH HOH . O 5 HOH A 14 714 29 HOH HOH . O 5 HOH A 15 715 173 HOH HOH . O 5 HOH A 16 716 93 HOH HOH . O 5 HOH A 17 717 174 HOH HOH . O 5 HOH A 18 718 58 HOH HOH . O 5 HOH A 19 719 168 HOH HOH . O 5 HOH A 20 720 179 HOH HOH . O 5 HOH A 21 721 155 HOH HOH . O 5 HOH A 22 722 12 HOH HOH . O 5 HOH A 23 723 181 HOH HOH . O 5 HOH A 24 724 92 HOH HOH . O 5 HOH A 25 725 104 HOH HOH . O 5 HOH A 26 726 107 HOH HOH . O 5 HOH A 27 727 105 HOH HOH . O 5 HOH A 28 728 156 HOH HOH . O 5 HOH A 29 729 162 HOH HOH . O 5 HOH A 30 730 100 HOH HOH . O 5 HOH A 31 731 45 HOH HOH . O 5 HOH A 32 732 106 HOH HOH . O 5 HOH A 33 733 40 HOH HOH . O 5 HOH A 34 734 108 HOH HOH . O 5 HOH A 35 735 170 HOH HOH . O 5 HOH A 36 736 90 HOH HOH . O 5 HOH A 37 737 33 HOH HOH . O 5 HOH A 38 738 175 HOH HOH . O 5 HOH A 39 739 91 HOH HOH . O 5 HOH A 40 740 82 HOH HOH . O 5 HOH A 41 741 2 HOH HOH . O 5 HOH A 42 742 166 HOH HOH . O 5 HOH A 43 743 259 HOH HOH . O 5 HOH A 44 744 109 HOH HOH . O 5 HOH A 45 745 99 HOH HOH . O 5 HOH A 46 746 57 HOH HOH . O 5 HOH A 47 747 238 HOH HOH . P 5 HOH B 1 701 76 HOH HOH . P 5 HOH B 2 702 62 HOH HOH . P 5 HOH B 3 703 11 HOH HOH . P 5 HOH B 4 704 186 HOH HOH . P 5 HOH B 5 705 117 HOH HOH . P 5 HOH B 6 706 145 HOH HOH . P 5 HOH B 7 707 220 HOH HOH . P 5 HOH B 8 708 187 HOH HOH . P 5 HOH B 9 709 115 HOH HOH . P 5 HOH B 10 710 201 HOH HOH . P 5 HOH B 11 711 47 HOH HOH . P 5 HOH B 12 712 194 HOH HOH . P 5 HOH B 13 713 23 HOH HOH . P 5 HOH B 14 714 34 HOH HOH . P 5 HOH B 15 715 191 HOH HOH . P 5 HOH B 16 716 121 HOH HOH . P 5 HOH B 17 717 44 HOH HOH . P 5 HOH B 18 718 183 HOH HOH . P 5 HOH B 19 719 219 HOH HOH . P 5 HOH B 20 720 154 HOH HOH . P 5 HOH B 21 721 3 HOH HOH . P 5 HOH B 22 722 216 HOH HOH . P 5 HOH B 23 723 51 HOH HOH . P 5 HOH B 24 724 217 HOH HOH . P 5 HOH B 25 725 218 HOH HOH . P 5 HOH B 26 726 53 HOH HOH . P 5 HOH B 27 727 86 HOH HOH . P 5 HOH B 28 728 42 HOH HOH . P 5 HOH B 29 729 263 HOH HOH . P 5 HOH B 30 730 211 HOH HOH . P 5 HOH B 31 731 153 HOH HOH . P 5 HOH B 32 732 20 HOH HOH . P 5 HOH B 33 733 64 HOH HOH . P 5 HOH B 34 734 160 HOH HOH . P 5 HOH B 35 735 215 HOH HOH . P 5 HOH B 36 736 266 HOH HOH . P 5 HOH B 37 737 198 HOH HOH . P 5 HOH B 38 738 8 HOH HOH . P 5 HOH B 39 739 213 HOH HOH . P 5 HOH B 40 740 182 HOH HOH . P 5 HOH B 41 741 144 HOH HOH . P 5 HOH B 42 742 212 HOH HOH . P 5 HOH B 43 743 49 HOH HOH . P 5 HOH B 44 744 119 HOH HOH . P 5 HOH B 45 745 159 HOH HOH . P 5 HOH B 46 746 50 HOH HOH . P 5 HOH B 47 747 1 HOH HOH . P 5 HOH B 48 748 111 HOH HOH . P 5 HOH B 49 749 197 HOH HOH . P 5 HOH B 50 750 116 HOH HOH . P 5 HOH B 51 751 214 HOH HOH . P 5 HOH B 52 752 28 HOH HOH . P 5 HOH B 53 753 209 HOH HOH . P 5 HOH B 54 754 204 HOH HOH . P 5 HOH B 55 755 54 HOH HOH . P 5 HOH B 56 756 269 HOH HOH . P 5 HOH B 57 757 195 HOH HOH . P 5 HOH B 58 758 30 HOH HOH . P 5 HOH B 59 759 48 HOH HOH . P 5 HOH B 60 760 193 HOH HOH . P 5 HOH B 61 761 120 HOH HOH . P 5 HOH B 62 762 39 HOH HOH . P 5 HOH B 63 763 96 HOH HOH . P 5 HOH B 64 764 247 HOH HOH . P 5 HOH B 65 765 222 HOH HOH . P 5 HOH B 66 766 192 HOH HOH . P 5 HOH B 67 767 22 HOH HOH . P 5 HOH B 68 768 55 HOH HOH . P 5 HOH B 69 769 203 HOH HOH . P 5 HOH B 70 770 75 HOH HOH . P 5 HOH B 71 771 114 HOH HOH . P 5 HOH B 72 772 38 HOH HOH . P 5 HOH B 73 773 16 HOH HOH . P 5 HOH B 74 774 224 HOH HOH . P 5 HOH B 75 775 113 HOH HOH . P 5 HOH B 76 776 52 HOH HOH . P 5 HOH B 77 777 185 HOH HOH . P 5 HOH B 78 778 190 HOH HOH . P 5 HOH B 79 779 262 HOH HOH . P 5 HOH B 80 780 66 HOH HOH . P 5 HOH B 81 781 206 HOH HOH . P 5 HOH B 82 782 221 HOH HOH . P 5 HOH B 83 783 72 HOH HOH . P 5 HOH B 84 784 110 HOH HOH . P 5 HOH B 85 785 205 HOH HOH . P 5 HOH B 86 786 143 HOH HOH . P 5 HOH B 87 787 208 HOH HOH . P 5 HOH B 88 788 184 HOH HOH . P 5 HOH B 89 789 202 HOH HOH . P 5 HOH B 90 790 196 HOH HOH . P 5 HOH B 91 791 13 HOH HOH . P 5 HOH B 92 792 63 HOH HOH . P 5 HOH B 93 793 260 HOH HOH . P 5 HOH B 94 794 152 HOH HOH . P 5 HOH B 95 795 223 HOH HOH . P 5 HOH B 96 796 189 HOH HOH . P 5 HOH B 97 797 267 HOH HOH . P 5 HOH B 98 798 207 HOH HOH . P 5 HOH B 99 799 151 HOH HOH . P 5 HOH B 100 800 265 HOH HOH . P 5 HOH B 101 801 268 HOH HOH . P 5 HOH B 102 802 264 HOH HOH . P 5 HOH B 103 803 149 HOH HOH . Q 5 HOH C 1 701 171 HOH HOH . Q 5 HOH C 2 702 103 HOH HOH . Q 5 HOH C 3 703 84 HOH HOH . Q 5 HOH C 4 704 164 HOH HOH . Q 5 HOH C 5 705 15 HOH HOH . Q 5 HOH C 6 706 231 HOH HOH . Q 5 HOH C 7 707 31 HOH HOH . Q 5 HOH C 8 708 230 HOH HOH . Q 5 HOH C 9 709 59 HOH HOH . Q 5 HOH C 10 710 5 HOH HOH . Q 5 HOH C 11 711 233 HOH HOH . Q 5 HOH C 12 712 237 HOH HOH . Q 5 HOH C 13 713 98 HOH HOH . Q 5 HOH C 14 714 236 HOH HOH . Q 5 HOH C 15 715 125 HOH HOH . Q 5 HOH C 16 716 235 HOH HOH . Q 5 HOH C 17 717 180 HOH HOH . Q 5 HOH C 18 718 126 HOH HOH . Q 5 HOH C 19 719 71 HOH HOH . Q 5 HOH C 20 720 19 HOH HOH . Q 5 HOH C 21 721 234 HOH HOH . Q 5 HOH C 22 722 157 HOH HOH . Q 5 HOH C 23 723 36 HOH HOH . Q 5 HOH C 24 724 146 HOH HOH . Q 5 HOH C 25 725 21 HOH HOH . Q 5 HOH C 26 726 83 HOH HOH . Q 5 HOH C 27 727 163 HOH HOH . Q 5 HOH C 28 728 124 HOH HOH . Q 5 HOH C 29 729 172 HOH HOH . Q 5 HOH C 30 730 123 HOH HOH . Q 5 HOH C 31 731 70 HOH HOH . Q 5 HOH C 32 732 225 HOH HOH . Q 5 HOH C 33 733 227 HOH HOH . Q 5 HOH C 34 734 228 HOH HOH . Q 5 HOH C 35 735 232 HOH HOH . Q 5 HOH C 36 736 85 HOH HOH . Q 5 HOH C 37 737 229 HOH HOH . Q 5 HOH C 38 738 226 HOH HOH . Q 5 HOH C 39 739 32 HOH HOH . Q 5 HOH C 40 740 270 HOH HOH . Q 5 HOH C 41 741 26 HOH HOH . Q 5 HOH C 42 742 6 HOH HOH . Q 5 HOH C 43 743 25 HOH HOH . Q 5 HOH C 44 744 89 HOH HOH . Q 5 HOH C 45 745 147 HOH HOH . Q 5 HOH C 46 746 122 HOH HOH . R 5 HOH D 1 701 73 HOH HOH . R 5 HOH D 2 702 161 HOH HOH . R 5 HOH D 3 703 10 HOH HOH . R 5 HOH D 4 704 240 HOH HOH . R 5 HOH D 5 705 95 HOH HOH . R 5 HOH D 6 706 140 HOH HOH . R 5 HOH D 7 707 137 HOH HOH . R 5 HOH D 8 708 97 HOH HOH . R 5 HOH D 9 709 4 HOH HOH . R 5 HOH D 10 710 248 HOH HOH . R 5 HOH D 11 711 112 HOH HOH . R 5 HOH D 12 712 35 HOH HOH . R 5 HOH D 13 713 253 HOH HOH . R 5 HOH D 14 714 242 HOH HOH . R 5 HOH D 15 715 252 HOH HOH . R 5 HOH D 16 716 135 HOH HOH . R 5 HOH D 17 717 65 HOH HOH . R 5 HOH D 18 718 128 HOH HOH . R 5 HOH D 19 719 200 HOH HOH . R 5 HOH D 20 720 251 HOH HOH . R 5 HOH D 21 721 80 HOH HOH . R 5 HOH D 22 722 7 HOH HOH . R 5 HOH D 23 723 61 HOH HOH . R 5 HOH D 24 724 127 HOH HOH . R 5 HOH D 25 725 136 HOH HOH . R 5 HOH D 26 726 67 HOH HOH . R 5 HOH D 27 727 46 HOH HOH . R 5 HOH D 28 728 27 HOH HOH . R 5 HOH D 29 729 139 HOH HOH . R 5 HOH D 30 730 239 HOH HOH . R 5 HOH D 31 731 249 HOH HOH . R 5 HOH D 32 732 148 HOH HOH . R 5 HOH D 33 733 258 HOH HOH . R 5 HOH D 34 734 9 HOH HOH . R 5 HOH D 35 735 41 HOH HOH . R 5 HOH D 36 736 87 HOH HOH . R 5 HOH D 37 737 77 HOH HOH . R 5 HOH D 38 738 133 HOH HOH . R 5 HOH D 39 739 245 HOH HOH . R 5 HOH D 40 740 243 HOH HOH . R 5 HOH D 41 741 141 HOH HOH . R 5 HOH D 42 742 18 HOH HOH . R 5 HOH D 43 743 17 HOH HOH . R 5 HOH D 44 744 138 HOH HOH . R 5 HOH D 45 745 74 HOH HOH . R 5 HOH D 46 746 81 HOH HOH . R 5 HOH D 47 747 199 HOH HOH . R 5 HOH D 48 748 79 HOH HOH . R 5 HOH D 49 749 188 HOH HOH . R 5 HOH D 50 750 210 HOH HOH . R 5 HOH D 51 751 43 HOH HOH . R 5 HOH D 52 752 134 HOH HOH . R 5 HOH D 53 753 68 HOH HOH . R 5 HOH D 54 754 132 HOH HOH . R 5 HOH D 55 755 24 HOH HOH . R 5 HOH D 56 756 256 HOH HOH . R 5 HOH D 57 757 60 HOH HOH . R 5 HOH D 58 758 244 HOH HOH . R 5 HOH D 59 759 118 HOH HOH . R 5 HOH D 60 760 250 HOH HOH . R 5 HOH D 61 761 142 HOH HOH . R 5 HOH D 62 762 14 HOH HOH . R 5 HOH D 63 763 246 HOH HOH . R 5 HOH D 64 764 130 HOH HOH . R 5 HOH D 65 765 69 HOH HOH . R 5 HOH D 66 766 255 HOH HOH . R 5 HOH D 67 767 241 HOH HOH . R 5 HOH D 68 768 272 HOH HOH . R 5 HOH D 69 769 158 HOH HOH . R 5 HOH D 70 770 271 HOH HOH . R 5 HOH D 71 771 56 HOH HOH . R 5 HOH D 72 772 254 HOH HOH . R 5 HOH D 73 773 257 HOH HOH . R 5 HOH D 74 774 261 HOH HOH . R 5 HOH D 75 775 131 HOH HOH . R 5 HOH D 76 776 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . E 2 -0.802 -17.697 0.47 1 50.3 ? N LYS 601 A 1 HETATM 2 C CA LYS . . . E 2 0.138 -18.046 1.522 1 52.83 ? CA LYS 601 A 1 HETATM 3 C C LYS . . . E 2 -0.477 -17.746 2.889 1 53.51 ? C LYS 601 A 1 HETATM 4 O O LYS . . . E 2 -1.399 -16.895 2.991 1 52.61 ? O LYS 601 A 1 HETATM 5 C CB LYS . . . E 2 1.449 -17.279 1.348 1 55.36 ? CB LYS 601 A 1 HETATM 6 C CG LYS . . . E 2 2.117 -17.68 0.034 1 55.38 ? CG LYS 601 A 1 HETATM 7 C CD LYS . . . E 2 2.766 -19.054 0.184 1 56.43 ? CD LYS 601 A 1 HETATM 8 C CE LYS . . . E 2 3.679 -19.322 -1.011 1 57.69 ? CE LYS 601 A 1 HETATM 9 N NZ LYS . . . E 2 2.879 -19.536 -2.204 1 52.05 ? NZ LYS 601 A 1 HETATM 10 O OXT LYS . . . E 2 -0.063 -18.351 3.912 1 54.9 ? OXT LYS 601 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 475 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #