data_6AQO
#
_model_server_result.job_id            XW33Rp2R78mgM3hH1solOw 
_model_server_result.datetime_utc      '2024-11-07 22:35:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6aqo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    6AQO 
#
_exptl.entry_id    6AQO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              441.271 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{[(2S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)propane-1,2-diyl]bis(oxyethane-2,1-diyl)}bis(phosphonic acid)' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.33 
_cell.angle_gamma         90 
_cell.entry_id            6AQO 
_cell.length_a            61.321 
_cell.length_b            107.841 
_cell.length_c            117.693 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AQO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,G,L,M,O,S 1 1 
B,F,H,N,P,T 2 1 
C,D,I,J,K,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 140 A ASP 102 1_555 A N CSO 141 A CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CSO 141 A CSO 103 1_555 A N GLY 142 A GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C ASP 140 B ASP 102 1_555 B N CSO 141 B CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C CSO 141 B CSO 103 1_555 B N GLY 142 B GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 C C ASP 140 C ASP 102 1_555 C N CSO 141 C CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 C C CSO 141 C CSO 103 1_555 C N GLY 142 C GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C ASP 140 D ASP 102 1_555 D N CSO 141 D CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 D C CSO 141 D CSO 103 1_555 D N GLY 142 D GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 E C ASP 140 E ASP 102 1_555 E N CSO 141 E CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 E C CSO 141 E CSO 103 1_555 E N GLY 142 E GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 F C ASP 140 F ASP 102 1_555 F N CSO 141 F CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 F C CSO 141 F CSO 103 1_555 F N GLY 142 F GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 E OE2 GLU 185 E GLU 147 1_555 M MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc2 E OD1 ASP 186 E ASP 148 1_555 M MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
#
_chem_comp.formula           'C12 H21 N5 O9 P2' 
_chem_comp.formula_weight    441.271 
_chem_comp.id                45T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{[(2S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)propane-1,2-diyl]bis(oxyethane-2,1-diyl)}bis(phosphonic acid)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 45T doub 1 n n 
N1 C6 45T sing 2 n n 
N1 C2 45T sing 3 n n 
C6 C5 45T sing 4 n n 
N2 C2 45T sing 5 n n 
C2 N3 45T doub 6 n n 
C5 N7 45T sing 7 n y 
C5 C4 45T doub 8 n y 
N7 C8 45T doub 9 n y 
N3 C4 45T sing 10 n n 
C4 N9 45T sing 11 n y 
C8 N9 45T sing 12 n y 
N9 CAO 45T sing 13 n n 
CAN OAS 45T sing 14 n n 
CAN CAY 45T sing 15 n n 
OAS CAJ 45T sing 16 n n 
OAT CAY 45T sing 17 n n 
OAT CAK 45T sing 18 n n 
CAY CAO 45T sing 19 n n 
CAJ CAL 45T sing 20 n n 
CAL PBA 45T sing 21 n n 
CAM CAK 45T sing 22 n n 
CAM PBB 45T sing 23 n n 
OAE PBA 45T doub 24 n n 
OAD PBB 45T doub 25 n n 
OAC PBA 45T sing 26 n n 
PBA OAF 45T sing 27 n n 
OAG PBB 45T sing 28 n n 
PBB OAH 45T sing 29 n n 
OAF H1 45T sing 30 n n 
OAC H2 45T sing 31 n n 
CAL H3 45T sing 32 n n 
CAL H4 45T sing 33 n n 
CAJ H5 45T sing 34 n n 
CAJ H6 45T sing 35 n n 
CAN H7 45T sing 36 n n 
CAN H8 45T sing 37 n n 
CAY H9 45T sing 38 n n 
CAK H10 45T sing 39 n n 
CAK H11 45T sing 40 n n 
CAM H12 45T sing 41 n n 
CAM H13 45T sing 42 n n 
OAG H14 45T sing 43 n n 
OAH H15 45T sing 44 n n 
CAO H16 45T sing 45 n n 
CAO H17 45T sing 46 n n 
N2 H18 45T sing 47 n n 
N2 H19 45T sing 48 n n 
N1 H20 45T sing 49 n n 
C8 H21 45T sing 50 n n 
#
_atom_sites.entry_id                     6AQO 
_atom_sites.fract_transf_matrix[1][1]    0.016308 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001808 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008549 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 45T A 1 301 1 45T 365 . 
H 2 45T B 1 301 2 45T 365 . 
I 2 45T C 1 301 3 45T 365 . 
J 2 45T D 1 301 4 45T 365 . 
K 3 MG D 1 302 3 MG MG . 
L 2 45T E 1 301 5 45T 365 . 
M 3 MG E 1 302 1 MG MG . 
N 2 45T F 1 301 6 45T 365 . 
O 4 HOH A 1 401 6 HOH HOH . 
O 4 HOH A 2 402 3 HOH HOH . 
O 4 HOH A 3 403 18 HOH HOH . 
O 4 HOH A 4 404 19 HOH HOH . 
O 4 HOH A 5 405 4 HOH HOH . 
O 4 HOH A 6 406 14 HOH HOH . 
O 4 HOH A 7 407 25 HOH HOH . 
O 4 HOH A 8 408 41 HOH HOH . 
P 4 HOH B 1 401 26 HOH HOH . 
P 4 HOH B 2 402 45 HOH HOH . 
P 4 HOH B 3 403 23 HOH HOH . 
P 4 HOH B 4 404 17 HOH HOH . 
P 4 HOH B 5 405 32 HOH HOH . 
P 4 HOH B 6 406 33 HOH HOH . 
P 4 HOH B 7 407 46 HOH HOH . 
P 4 HOH B 8 408 29 HOH HOH . 
Q 4 HOH C 1 401 27 HOH HOH . 
Q 4 HOH C 2 402 37 HOH HOH . 
Q 4 HOH C 3 403 38 HOH HOH . 
Q 4 HOH C 4 404 21 HOH HOH . 
Q 4 HOH C 5 405 52 HOH HOH . 
Q 4 HOH C 6 406 9 HOH HOH . 
Q 4 HOH C 7 407 31 HOH HOH . 
R 4 HOH D 1 401 13 HOH HOH . 
R 4 HOH D 2 402 8 HOH HOH . 
R 4 HOH D 3 403 53 HOH HOH . 
R 4 HOH D 4 404 12 HOH HOH . 
R 4 HOH D 5 405 20 HOH HOH . 
R 4 HOH D 6 406 51 HOH HOH . 
R 4 HOH D 7 407 39 HOH HOH . 
S 4 HOH E 1 401 47 HOH HOH . 
S 4 HOH E 2 402 5 HOH HOH . 
S 4 HOH E 3 403 50 HOH HOH . 
S 4 HOH E 4 404 28 HOH HOH . 
S 4 HOH E 5 405 42 HOH HOH . 
S 4 HOH E 6 406 22 HOH HOH . 
S 4 HOH E 7 407 16 HOH HOH . 
S 4 HOH E 8 408 24 HOH HOH . 
S 4 HOH E 9 409 34 HOH HOH . 
S 4 HOH E 10 410 15 HOH HOH . 
T 4 HOH F 1 401 7 HOH HOH . 
T 4 HOH F 2 402 44 HOH HOH . 
T 4 HOH F 3 403 10 HOH HOH . 
T 4 HOH F 4 404 48 HOH HOH . 
T 4 HOH F 5 405 49 HOH HOH . 
T 4 HOH F 6 406 30 HOH HOH . 
T 4 HOH F 7 407 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAE 45T . . . H 2 2.441 -34.308 -5.816 1 110.53 -1 OAE 45T 301 B 1 
HETATM 2 P PBA 45T . . . H 2 2.478 -33.231 -4.76 1 110.84 ? PBA 45T 301 B 1 
HETATM 3 O OAF 45T . . . H 2 1.248 -33.324 -3.887 1 109.82 -1 OAF 45T 301 B 1 
HETATM 4 O OAC 45T . . . H 2 3.718 -33.383 -3.909 1 114.94 ? OAC 45T 301 B 1 
HETATM 5 C CAL 45T . . . H 2 2.509 -31.565 -5.579 1 102.23 ? CAL 45T 301 B 1 
HETATM 6 C CAJ 45T . . . H 2 1.833 -30.537 -4.681 1 90.54 ? CAJ 45T 301 B 1 
HETATM 7 O OAS 45T . . . H 2 2.476 -29.319 -4.893 1 82.71 ? OAS 45T 301 B 1 
HETATM 8 C CAN 45T . . . H 2 1.715 -28.476 -5.697 1 75.6 ? CAN 45T 301 B 1 
HETATM 9 C CAY 45T . . . H 2 1.147 -27.354 -4.838 1 67.3 ? CAY 45T 301 B 1 
HETATM 10 O OAT 45T . . . H 2 1.907 -26.221 -5.131 1 65.88 ? OAT 45T 301 B 1 
HETATM 11 C CAK 45T . . . H 2 2.392 -25.482 -4.049 1 64.06 ? CAK 45T 301 B 1 
HETATM 12 C CAM 45T . . . H 2 3.179 -24.332 -4.674 1 65 ? CAM 45T 301 B 1 
HETATM 13 P PBB 45T . . . H 2 3.391 -22.895 -3.516 1 68.24 ? PBB 45T 301 B 1 
HETATM 14 O OAG 45T . . . H 2 3.241 -23.376 -2.09 1 73.12 -1 OAG 45T 301 B 1 
HETATM 15 O OAH 45T . . . H 2 4.774 -22.317 -3.712 1 66.5 ? OAH 45T 301 B 1 
HETATM 16 O OAD 45T . . . H 2 2.354 -21.838 -3.809 1 64.25 -1 OAD 45T 301 B 1 
HETATM 17 C CAO 45T . . . H 2 -0.31 -27.064 -5.188 1 65.99 ? CAO 45T 301 B 1 
HETATM 18 N N9 45T . . . H 2 -0.412 -26.513 -6.53 1 69.55 ? N9 45T 301 B 1 
HETATM 19 C C4 45T . . . H 2 -0.714 -27.186 -7.651 1 68.18 ? C4 45T 301 B 1 
HETATM 20 N N3 45T . . . H 2 -1.024 -28.612 -7.946 1 62.37 ? N3 45T 301 B 1 
HETATM 21 C C2 45T . . . H 2 -1.316 -29.036 -9.319 1 57.53 ? C2 45T 301 B 1 
HETATM 22 N N2 45T . . . H 2 -1.62 -30.424 -9.606 1 57.01 ? N2 45T 301 B 1 
HETATM 23 N N1 45T . . . H 2 -1.305 -28.068 -10.397 1 62.64 ? N1 45T 301 B 1 
HETATM 24 C C6 45T . . . H 2 -1.007 -26.695 -10.114 1 66.56 ? C6 45T 301 B 1 
HETATM 25 O O6 45T . . . H 2 -0.995 -25.899 -10.99 1 66.58 ? O6 45T 301 B 1 
HETATM 26 C C5 45T . . . H 2 -0.701 -26.259 -8.68 1 70.04 ? C5 45T 301 B 1 
HETATM 27 N N7 45T . . . H 2 -0.396 -25.073 -8.139 1 69.18 ? N7 45T 301 B 1 
HETATM 28 C C8 45T . . . H 2 -0.23 -25.238 -6.84 1 68.49 ? C8 45T 301 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#