data_6AQO # _model_server_result.job_id XSNSNqlQlge-9a0jiLnMhw _model_server_result.datetime_utc '2024-11-07 22:40:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 6AQO # _exptl.entry_id 6AQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.271 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(2S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)propane-1,2-diyl]bis(oxyethane-2,1-diyl)}bis(phosphonic acid)' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.33 _cell.angle_gamma 90 _cell.entry_id 6AQO _cell.length_a 61.321 _cell.length_b 107.841 _cell.length_c 117.693 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,L,M,O,S 1 1 B,F,H,N,P,T 2 1 C,D,I,J,K,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 140 A ASP 102 1_555 A N CSO 141 A CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CSO 141 A CSO 103 1_555 A N GLY 142 A GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ASP 140 B ASP 102 1_555 B N CSO 141 B CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CSO 141 B CSO 103 1_555 B N GLY 142 B GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C ASP 140 C ASP 102 1_555 C N CSO 141 C CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C CSO 141 C CSO 103 1_555 C N GLY 142 C GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C ASP 140 D ASP 102 1_555 D N CSO 141 D CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C CSO 141 D CSO 103 1_555 D N GLY 142 D GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E C ASP 140 E ASP 102 1_555 E N CSO 141 E CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 E C CSO 141 E CSO 103 1_555 E N GLY 142 E GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 F C ASP 140 F ASP 102 1_555 F N CSO 141 F CSO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 F C CSO 141 F CSO 103 1_555 F N GLY 142 F GLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 E OE2 GLU 185 E GLU 147 1_555 M MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc2 E OD1 ASP 186 E ASP 148 1_555 M MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? # _chem_comp.formula 'C12 H21 N5 O9 P2' _chem_comp.formula_weight 441.271 _chem_comp.id 45T _chem_comp.mon_nstd_flag . _chem_comp.name '{[(2S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)propane-1,2-diyl]bis(oxyethane-2,1-diyl)}bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 45T doub 1 n n N1 C6 45T sing 2 n n N1 C2 45T sing 3 n n C6 C5 45T sing 4 n n N2 C2 45T sing 5 n n C2 N3 45T doub 6 n n C5 N7 45T sing 7 n y C5 C4 45T doub 8 n y N7 C8 45T doub 9 n y N3 C4 45T sing 10 n n C4 N9 45T sing 11 n y C8 N9 45T sing 12 n y N9 CAO 45T sing 13 n n CAN OAS 45T sing 14 n n CAN CAY 45T sing 15 n n OAS CAJ 45T sing 16 n n OAT CAY 45T sing 17 n n OAT CAK 45T sing 18 n n CAY CAO 45T sing 19 n n CAJ CAL 45T sing 20 n n CAL PBA 45T sing 21 n n CAM CAK 45T sing 22 n n CAM PBB 45T sing 23 n n OAE PBA 45T doub 24 n n OAD PBB 45T doub 25 n n OAC PBA 45T sing 26 n n PBA OAF 45T sing 27 n n OAG PBB 45T sing 28 n n PBB OAH 45T sing 29 n n OAF H1 45T sing 30 n n OAC H2 45T sing 31 n n CAL H3 45T sing 32 n n CAL H4 45T sing 33 n n CAJ H5 45T sing 34 n n CAJ H6 45T sing 35 n n CAN H7 45T sing 36 n n CAN H8 45T sing 37 n n CAY H9 45T sing 38 n n CAK H10 45T sing 39 n n CAK H11 45T sing 40 n n CAM H12 45T sing 41 n n CAM H13 45T sing 42 n n OAG H14 45T sing 43 n n OAH H15 45T sing 44 n n CAO H16 45T sing 45 n n CAO H17 45T sing 46 n n N2 H18 45T sing 47 n n N2 H19 45T sing 48 n n N1 H20 45T sing 49 n n C8 H21 45T sing 50 n n # _atom_sites.entry_id 6AQO _atom_sites.fract_transf_matrix[1][1] 0.016308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001808 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 45T A 1 301 1 45T 365 . H 2 45T B 1 301 2 45T 365 . I 2 45T C 1 301 3 45T 365 . J 2 45T D 1 301 4 45T 365 . K 3 MG D 1 302 3 MG MG . L 2 45T E 1 301 5 45T 365 . M 3 MG E 1 302 1 MG MG . N 2 45T F 1 301 6 45T 365 . O 4 HOH A 1 401 6 HOH HOH . O 4 HOH A 2 402 3 HOH HOH . O 4 HOH A 3 403 18 HOH HOH . O 4 HOH A 4 404 19 HOH HOH . O 4 HOH A 5 405 4 HOH HOH . O 4 HOH A 6 406 14 HOH HOH . O 4 HOH A 7 407 25 HOH HOH . O 4 HOH A 8 408 41 HOH HOH . P 4 HOH B 1 401 26 HOH HOH . P 4 HOH B 2 402 45 HOH HOH . P 4 HOH B 3 403 23 HOH HOH . P 4 HOH B 4 404 17 HOH HOH . P 4 HOH B 5 405 32 HOH HOH . P 4 HOH B 6 406 33 HOH HOH . P 4 HOH B 7 407 46 HOH HOH . P 4 HOH B 8 408 29 HOH HOH . Q 4 HOH C 1 401 27 HOH HOH . Q 4 HOH C 2 402 37 HOH HOH . Q 4 HOH C 3 403 38 HOH HOH . Q 4 HOH C 4 404 21 HOH HOH . Q 4 HOH C 5 405 52 HOH HOH . Q 4 HOH C 6 406 9 HOH HOH . Q 4 HOH C 7 407 31 HOH HOH . R 4 HOH D 1 401 13 HOH HOH . R 4 HOH D 2 402 8 HOH HOH . R 4 HOH D 3 403 53 HOH HOH . R 4 HOH D 4 404 12 HOH HOH . R 4 HOH D 5 405 20 HOH HOH . R 4 HOH D 6 406 51 HOH HOH . R 4 HOH D 7 407 39 HOH HOH . S 4 HOH E 1 401 47 HOH HOH . S 4 HOH E 2 402 5 HOH HOH . S 4 HOH E 3 403 50 HOH HOH . S 4 HOH E 4 404 28 HOH HOH . S 4 HOH E 5 405 42 HOH HOH . S 4 HOH E 6 406 22 HOH HOH . S 4 HOH E 7 407 16 HOH HOH . S 4 HOH E 8 408 24 HOH HOH . S 4 HOH E 9 409 34 HOH HOH . S 4 HOH E 10 410 15 HOH HOH . T 4 HOH F 1 401 7 HOH HOH . T 4 HOH F 2 402 44 HOH HOH . T 4 HOH F 3 403 10 HOH HOH . T 4 HOH F 4 404 48 HOH HOH . T 4 HOH F 5 405 49 HOH HOH . T 4 HOH F 6 406 30 HOH HOH . T 4 HOH F 7 407 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE 45T . . . L 2 6.342 -1.716 -31.797 1 112.55 -1 OAE 45T 301 E 1 HETATM 2 P PBA 45T . . . L 2 5.623 -1.185 -30.58 1 111.67 ? PBA 45T 301 E 1 HETATM 3 O OAF 45T . . . L 2 4.521 -2.141 -30.191 1 112.22 -1 OAF 45T 301 E 1 HETATM 4 O OAC 45T . . . L 2 5.033 0.171 -30.89 1 114.3 ? OAC 45T 301 E 1 HETATM 5 C CAL 45T . . . L 2 6.831 -1.025 -29.174 1 108.8 ? CAL 45T 301 E 1 HETATM 6 C CAJ 45T . . . L 2 6.126 -1.168 -27.829 1 105.59 ? CAJ 45T 301 E 1 HETATM 7 O OAS 45T . . . L 2 6.841 -2.105 -27.078 1 100.21 ? OAS 45T 301 E 1 HETATM 8 C CAN 45T . . . L 2 6.058 -2.828 -26.175 1 86.9 ? CAN 45T 301 E 1 HETATM 9 C CAY 45T . . . L 2 6.547 -2.491 -24.768 1 71.02 ? CAY 45T 301 E 1 HETATM 10 O OAT 45T . . . L 2 5.729 -3.174 -23.866 1 72.04 ? OAT 45T 301 E 1 HETATM 11 C CAK 45T . . . L 2 5.337 -2.428 -22.753 1 68.65 ? CAK 45T 301 E 1 HETATM 12 C CAM 45T . . . L 2 4.625 -3.396 -21.814 1 63.97 ? CAM 45T 301 E 1 HETATM 13 P PBB 45T . . . L 2 4.119 -2.576 -20.226 1 63.9 ? PBB 45T 301 E 1 HETATM 14 O OAG 45T . . . L 2 5.151 -2.863 -19.161 1 59.45 -1 OAG 45T 301 E 1 HETATM 15 O OAH 45T . . . L 2 2.774 -3.126 -19.813 1 58.88 ? OAH 45T 301 E 1 HETATM 16 O OAD 45T . . . L 2 4.007 -1.082 -20.436 1 60.11 -1 OAD 45T 301 E 1 HETATM 17 C CAO 45T . . . L 2 8.009 -2.873 -24.533 1 64.32 ? CAO 45T 301 E 1 HETATM 18 N N9 45T . . . L 2 8.212 -4.279 -24.21 1 65.86 ? N9 45T 301 E 1 HETATM 19 C C4 45T . . . L 2 8.707 -5.207 -25.039 1 65.37 ? C4 45T 301 E 1 HETATM 20 N N3 45T . . . L 2 9.163 -5.169 -26.453 1 70.24 ? N3 45T 301 E 1 HETATM 21 C C2 45T . . . L 2 9.656 -6.387 -27.103 1 70.43 ? C2 45T 301 E 1 HETATM 22 N N2 45T . . . L 2 10.1 -6.343 -28.484 1 70.4 ? N2 45T 301 E 1 HETATM 23 N N1 45T . . . L 2 9.705 -7.634 -26.365 1 73.23 ? N1 45T 301 E 1 HETATM 24 C C6 45T . . . L 2 9.266 -7.671 -25 1 67.23 ? C6 45T 301 E 1 HETATM 25 O O6 45T . . . L 2 9.303 -8.688 -24.394 1 61.96 ? O6 45T 301 E 1 HETATM 26 C C5 45T . . . L 2 8.751 -6.395 -24.331 1 64.94 ? C5 45T 301 E 1 HETATM 27 N N7 45T . . . L 2 8.288 -6.135 -23.105 1 64.77 ? N7 45T 301 E 1 HETATM 28 C C8 45T . . . L 2 7.973 -4.851 -23.04 1 65.41 ? C8 45T 301 E 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #