data_6ARK # _model_server_result.job_id XSWZ7nErYbri3a2dL_koxg _model_server_result.datetime_utc '2024-11-22 11:48:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ark # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6ARK # _exptl.entry_id 6ARK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.259 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-N-(6-bromonaphthalen-2-yl)-3-hydroxy-1-propanoyl-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ARK _cell.length_a 94.28 _cell.length_b 94.28 _cell.length_c 119.55 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ARK _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 D C07 BQD . A BQD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 C MG MG . A MG 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 C MG MG . A MG 202 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C18 H19 Br N2 O3' _chem_comp.formula_weight 391.259 _chem_comp.id BQD _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-N-(6-bromonaphthalen-2-yl)-3-hydroxy-1-propanoyl-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 BQD sing 70 n n C10 C11 BQD sing 71 n n C10 C09 BQD sing 72 n n C11 C03 BQD sing 73 n n C09 N04 BQD sing 74 n n C03 C02 BQD sing 75 n n C03 N04 BQD sing 76 n n C24 C23 BQD doub 77 n y C24 C14 BQD sing 78 n y N13 C02 BQD sing 79 n n N13 C14 BQD sing 80 n n C02 O01 BQD doub 81 n n N04 C05 BQD sing 82 n n C23 C22 BQD sing 83 n y C14 C15 BQD doub 84 n y C22 C21 BQD doub 85 n y C22 C16 BQD sing 86 n y C15 C16 BQD sing 87 n y C21 C19 BQD sing 88 n y C16 C17 BQD doub 89 n y C19 BR BQD sing 90 n n C19 C18 BQD doub 91 n y C17 C18 BQD sing 92 n y C05 C06 BQD sing 93 n n C05 O08 BQD doub 94 n n C06 C07 BQD sing 95 n n C10 H102 BQD sing 96 n n C10 H101 BQD sing 97 n n C15 H151 BQD sing 98 n n C17 H171 BQD sing 99 n n C21 H211 BQD sing 100 n n C24 H241 BQD sing 101 n n C03 H031 BQD sing 102 n n C06 H062 BQD sing 103 n n C06 H061 BQD sing 104 n n C07 H073 BQD sing 105 n n C07 H1 BQD sing 106 n n C07 H072 BQD sing 107 n n C09 H092 BQD sing 108 n n C09 H091 BQD sing 109 n n C11 H111 BQD sing 110 n n O12 H121 BQD sing 111 n n N13 H131 BQD sing 112 n n C18 H181 BQD sing 113 n n C23 H231 BQD sing 114 n n # _atom_sites.entry_id 6ARK _atom_sites.fract_transf_matrix[1][1] 0.010607 _atom_sites.fract_transf_matrix[1][2] 0.006124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 170 GDP GDP . C 3 MG A 1 202 171 MG MG . D 4 BQD A 1 203 172 BQD LIG . E 5 GOL A 1 204 173 GOL GOL . F 5 GOL A 1 205 174 GOL GOL . G 6 HOH A 1 301 210 HOH HOH . G 6 HOH A 2 302 193 HOH HOH . G 6 HOH A 3 303 228 HOH HOH . G 6 HOH A 4 304 215 HOH HOH . G 6 HOH A 5 305 220 HOH HOH . G 6 HOH A 6 306 214 HOH HOH . G 6 HOH A 7 307 194 HOH HOH . G 6 HOH A 8 308 219 HOH HOH . G 6 HOH A 9 309 189 HOH HOH . G 6 HOH A 10 310 195 HOH HOH . G 6 HOH A 11 311 230 HOH HOH . G 6 HOH A 12 312 201 HOH HOH . G 6 HOH A 13 313 187 HOH HOH . G 6 HOH A 14 314 226 HOH HOH . G 6 HOH A 15 315 192 HOH HOH . G 6 HOH A 16 316 224 HOH HOH . G 6 HOH A 17 317 178 HOH HOH . G 6 HOH A 18 318 204 HOH HOH . G 6 HOH A 19 319 200 HOH HOH . G 6 HOH A 20 320 182 HOH HOH . G 6 HOH A 21 321 216 HOH HOH . G 6 HOH A 22 322 181 HOH HOH . G 6 HOH A 23 323 202 HOH HOH . G 6 HOH A 24 324 176 HOH HOH . G 6 HOH A 25 325 206 HOH HOH . G 6 HOH A 26 326 180 HOH HOH . G 6 HOH A 27 327 213 HOH HOH . G 6 HOH A 28 328 207 HOH HOH . G 6 HOH A 29 329 185 HOH HOH . G 6 HOH A 30 330 205 HOH HOH . G 6 HOH A 31 331 197 HOH HOH . G 6 HOH A 32 332 188 HOH HOH . G 6 HOH A 33 333 186 HOH HOH . G 6 HOH A 34 334 183 HOH HOH . G 6 HOH A 35 335 198 HOH HOH . G 6 HOH A 36 336 179 HOH HOH . G 6 HOH A 37 337 227 HOH HOH . G 6 HOH A 38 338 225 HOH HOH . G 6 HOH A 39 339 177 HOH HOH . G 6 HOH A 40 340 190 HOH HOH . G 6 HOH A 41 341 218 HOH HOH . G 6 HOH A 42 342 196 HOH HOH . G 6 HOH A 43 343 191 HOH HOH . G 6 HOH A 44 344 209 HOH HOH . G 6 HOH A 45 345 175 HOH HOH . G 6 HOH A 46 346 221 HOH HOH . G 6 HOH A 47 347 184 HOH HOH . G 6 HOH A 48 348 208 HOH HOH . G 6 HOH A 49 349 211 HOH HOH . G 6 HOH A 50 350 223 HOH HOH . G 6 HOH A 51 351 203 HOH HOH . G 6 HOH A 52 352 217 HOH HOH . G 6 HOH A 53 353 229 HOH HOH . G 6 HOH A 54 354 212 HOH HOH . G 6 HOH A 55 355 222 HOH HOH . G 6 HOH A 56 356 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 BQD . . . D 4 -1.287 8.313 -23.682 1 70.74 ? C10 BQD 203 A 1 HETATM 2 C C15 BQD . . . D 4 3.9 10.542 -20.637 1 49.84 ? C15 BQD 203 A 1 HETATM 3 C C17 BQD . . . D 4 5.31 12.477 -19.981 1 61.01 ? C17 BQD 203 A 1 HETATM 4 C C21 BQD . . . D 4 7.624 11.009 -20.56 1 57.29 ? C21 BQD 203 A 1 HETATM 5 C C22 BQD . . . D 4 6.334 10.419 -20.739 1 54.85 ? C22 BQD 203 A 1 HETATM 6 C C24 BQD . . . D 4 4.946 8.496 -21.395 1 62.66 ? C24 BQD 203 A 1 HETATM 7 O O01 BQD . . . D 4 1.041 10.308 -21.025 1 38.82 ? O01 BQD 203 A 1 HETATM 8 C C02 BQD . . . D 4 1.184 9.175 -21.289 1 61.66 ? C02 BQD 203 A 1 HETATM 9 C C03 BQD . . . D 4 -0.018 8.287 -21.607 1 63.15 ? C03 BQD 203 A 1 HETATM 10 N N04 BQD . . . D 4 -1.109 8.86 -21.247 1 65.47 ? N04 BQD 203 A 1 HETATM 11 C C05 BQD . . . D 4 -1.526 9.15 -19.852 1 63.57 ? C05 BQD 203 A 1 HETATM 12 C C06 BQD . . . D 4 -2.886 9.852 -19.583 1 233.38 ? C06 BQD 203 A 1 HETATM 13 C C07 BQD . . . D 4 -3.63 9.249 -18.337 1 47.94 ? C07 BQD 203 A 1 HETATM 14 O O08 BQD . . . D 4 -0.799 8.838 -18.928 1 59.32 ? O08 BQD 203 A 1 HETATM 15 C C09 BQD . . . D 4 -1.929 9.192 -22.583 1 65.04 ? C09 BQD 203 A 1 HETATM 16 C C11 BQD . . . D 4 -0.06 8.06 -23.27 1 70.06 ? C11 BQD 203 A 1 HETATM 17 O O12 BQD . . . D 4 0.873 8.971 -23.916 1 62.24 ? O12 BQD 203 A 1 HETATM 18 N N13 BQD . . . D 4 2.489 8.526 -21.338 1 67.89 ? N13 BQD 203 A 1 HETATM 19 C C14 BQD . . . D 4 3.799 9.215 -21.101 1 63.92 ? C14 BQD 203 A 1 HETATM 20 C C16 BQD . . . D 4 5.205 11.138 -20.457 1 57.3 ? C16 BQD 203 A 1 HETATM 21 C C18 BQD . . . D 4 6.578 13.056 -19.807 1 65.32 ? C18 BQD 203 A 1 HETATM 22 C C19 BQD . . . D 4 7.723 12.321 -20.097 1 70.1 ? C19 BQD 203 A 1 HETATM 23 BR BR BQD . . . D 4 9.508 13.096 -19.867 1 69.74 ? BR BQD 203 A 1 HETATM 24 C C23 BQD . . . D 4 6.235 9.079 -21.219 1 56.75 ? C23 BQD 203 A 1 HETATM 25 H H102 BQD . . . D 4 -1.784 7.485 -23.777 1 84.88 ? H102 BQD 203 A 1 HETATM 26 H H101 BQD . . . D 4 -1.264 8.794 -24.524 1 84.88 ? H101 BQD 203 A 1 HETATM 27 H H151 BQD . . . D 4 3.132 11.03 -20.447 1 59.8 ? H151 BQD 203 A 1 HETATM 28 H H171 BQD . . . D 4 4.543 12.967 -19.789 1 73.21 ? H171 BQD 203 A 1 HETATM 29 H H211 BQD . . . D 4 8.393 10.523 -20.754 1 68.74 ? H211 BQD 203 A 1 HETATM 30 H H241 BQD . . . D 4 4.873 7.622 -21.705 1 75.19 ? H241 BQD 203 A 1 HETATM 31 H H031 BQD . . . D 4 0.069 7.431 -21.159 1 75.78 ? H031 BQD 203 A 1 HETATM 32 H H062 BQD . . . D 4 -3.452 9.753 -20.365 1 280.06 ? H062 BQD 203 A 1 HETATM 33 H H061 BQD . . . D 4 -2.727 10.796 -19.428 1 280.06 ? H061 BQD 203 A 1 HETATM 34 H H073 BQD . . . D 4 -3.545 8.283 -18.349 1 57.53 ? H073 BQD 203 A 1 HETATM 35 H H072 BQD . . . D 4 -3.236 9.599 -17.523 1 57.53 ? H072 BQD 203 A 1 HETATM 36 H H092 BQD . . . D 4 -2.863 8.955 -22.472 1 78.05 ? H092 BQD 203 A 1 HETATM 37 H H091 BQD . . . D 4 -1.838 10.132 -22.807 1 78.05 ? H091 BQD 203 A 1 HETATM 38 H H111 BQD . . . D 4 0.173 7.142 -23.48 1 84.07 ? H111 BQD 203 A 1 HETATM 39 H H121 BQD . . . D 4 1.463 8.524 -24.334 1 74.69 ? H121 BQD 203 A 1 HETATM 40 H H131 BQD . . . D 4 2.511 7.694 -21.554 1 81.47 ? H131 BQD 203 A 1 HETATM 41 H H181 BQD . . . D 4 6.652 13.93 -19.496 1 78.38 ? H181 BQD 203 A 1 HETATM 42 H H231 BQD . . . D 4 7.003 8.59 -21.411 1 68.1 ? H231 BQD 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #