data_6ARK # _model_server_result.job_id cMgOtuzBVwN4umFaIZoI3Q _model_server_result.datetime_utc '2024-11-22 11:44:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ark # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6ARK # _exptl.entry_id 6ARK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ARK _cell.length_a 94.28 _cell.length_b 94.28 _cell.length_c 119.55 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ARK _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 D C07 BQD . A BQD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 C MG MG . A MG 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 C MG MG . A MG 202 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 219 n n C1 C2 GOL sing 220 n n C1 H11 GOL sing 221 n n C1 H12 GOL sing 222 n n O1 HO1 GOL sing 223 n n C2 O2 GOL sing 224 n n C2 C3 GOL sing 225 n n C2 H2 GOL sing 226 n n O2 HO2 GOL sing 227 n n C3 O3 GOL sing 228 n n C3 H31 GOL sing 229 n n C3 H32 GOL sing 230 n n O3 HO3 GOL sing 231 n n # _atom_sites.entry_id 6ARK _atom_sites.fract_transf_matrix[1][1] 0.010607 _atom_sites.fract_transf_matrix[1][2] 0.006124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 170 GDP GDP . C 3 MG A 1 202 171 MG MG . D 4 BQD A 1 203 172 BQD LIG . E 5 GOL A 1 204 173 GOL GOL . F 5 GOL A 1 205 174 GOL GOL . G 6 HOH A 1 301 210 HOH HOH . G 6 HOH A 2 302 193 HOH HOH . G 6 HOH A 3 303 228 HOH HOH . G 6 HOH A 4 304 215 HOH HOH . G 6 HOH A 5 305 220 HOH HOH . G 6 HOH A 6 306 214 HOH HOH . G 6 HOH A 7 307 194 HOH HOH . G 6 HOH A 8 308 219 HOH HOH . G 6 HOH A 9 309 189 HOH HOH . G 6 HOH A 10 310 195 HOH HOH . G 6 HOH A 11 311 230 HOH HOH . G 6 HOH A 12 312 201 HOH HOH . G 6 HOH A 13 313 187 HOH HOH . G 6 HOH A 14 314 226 HOH HOH . G 6 HOH A 15 315 192 HOH HOH . G 6 HOH A 16 316 224 HOH HOH . G 6 HOH A 17 317 178 HOH HOH . G 6 HOH A 18 318 204 HOH HOH . G 6 HOH A 19 319 200 HOH HOH . G 6 HOH A 20 320 182 HOH HOH . G 6 HOH A 21 321 216 HOH HOH . G 6 HOH A 22 322 181 HOH HOH . G 6 HOH A 23 323 202 HOH HOH . G 6 HOH A 24 324 176 HOH HOH . G 6 HOH A 25 325 206 HOH HOH . G 6 HOH A 26 326 180 HOH HOH . G 6 HOH A 27 327 213 HOH HOH . G 6 HOH A 28 328 207 HOH HOH . G 6 HOH A 29 329 185 HOH HOH . G 6 HOH A 30 330 205 HOH HOH . G 6 HOH A 31 331 197 HOH HOH . G 6 HOH A 32 332 188 HOH HOH . G 6 HOH A 33 333 186 HOH HOH . G 6 HOH A 34 334 183 HOH HOH . G 6 HOH A 35 335 198 HOH HOH . G 6 HOH A 36 336 179 HOH HOH . G 6 HOH A 37 337 227 HOH HOH . G 6 HOH A 38 338 225 HOH HOH . G 6 HOH A 39 339 177 HOH HOH . G 6 HOH A 40 340 190 HOH HOH . G 6 HOH A 41 341 218 HOH HOH . G 6 HOH A 42 342 196 HOH HOH . G 6 HOH A 43 343 191 HOH HOH . G 6 HOH A 44 344 209 HOH HOH . G 6 HOH A 45 345 175 HOH HOH . G 6 HOH A 46 346 221 HOH HOH . G 6 HOH A 47 347 184 HOH HOH . G 6 HOH A 48 348 208 HOH HOH . G 6 HOH A 49 349 211 HOH HOH . G 6 HOH A 50 350 223 HOH HOH . G 6 HOH A 51 351 203 HOH HOH . G 6 HOH A 52 352 217 HOH HOH . G 6 HOH A 53 353 229 HOH HOH . G 6 HOH A 54 354 212 HOH HOH . G 6 HOH A 55 355 222 HOH HOH . G 6 HOH A 56 356 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -11.939 21.116 -40.662 1 53.08 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 5 -12.399 21.983 -39.614 1 47.9 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 5 -13.02 20.046 -40.964 1 82.05 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 5 -14.229 20.696 -41.301 1 84.86 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 5 -12.578 19.173 -42.095 1 58.91 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 5 -11.594 18.257 -41.667 1 38.64 ? O3 GOL 205 A 1 HETATM 7 H H11 GOL . . . F 5 -11.103 20.67 -40.377 1 63.7 ? H11 GOL 205 A 1 HETATM 8 H H12 GOL . . . F 5 -11.765 21.653 -41.484 1 63.7 ? H12 GOL 205 A 1 HETATM 9 H HO1 GOL . . . F 5 -11.691 22.445 -39.268 1 57.48 ? HO1 GOL 205 A 1 HETATM 10 H H2 GOL . . . F 5 -13.157 19.509 -40.19 1 98.47 ? H2 GOL 205 A 1 HETATM 11 H HO2 GOL . . . F 5 -14.06 21.364 -41.859 1 101.83 ? HO2 GOL 205 A 1 HETATM 12 H H31 GOL . . . F 5 -13.338 18.686 -42.436 1 70.69 ? H31 GOL 205 A 1 HETATM 13 H H32 GOL . . . F 5 -12.218 19.722 -42.792 1 70.69 ? H32 GOL 205 A 1 HETATM 14 H HO3 GOL . . . F 5 -10.815 18.596 -41.79 1 46.37 ? HO3 GOL 205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #