data_6AS7 # _model_server_result.job_id yE7U5CoSyFzZ8EpLIKJMKg _model_server_result.datetime_utc '2024-11-22 16:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6as7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1301}' # _entry.id 6AS7 # _exptl.entry_id 6AS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AS7 _cell.length_a 151.807 _cell.length_b 151.807 _cell.length_c 113.299 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 525 A ASP 860 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A OD1 ASP 525 A ASP 860 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc3 A OD2 ASP 525 A ASP 860 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc4 A O PHE 526 A PHE 861 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc5 A OD1 ASP 669 A ASP 1004 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 A OD1 ASP 669 A ASP 1004 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc7 A OD2 ASP 669 A ASP 1004 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc8 D O1A DCP . A DCP 1301 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc9 D O1B DCP . A DCP 1301 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc10 D O1G DCP . A DCP 1301 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc11 D O1A DCP . A DCP 1301 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc12 B N7 DG 5 B DG 5 1_555 G CO CO . B CO 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc13 C N7 DG 11 C DG 119 1_555 H CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 1 1_555 C N3 DC 13 C DC 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 1 1_555 C O2 DC 13 C DC 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 1 1_555 C N4 DC 13 C DC 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 2 B DC 2 1_555 C N1 DG 12 C DG 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 2 B DC 2 1_555 C O6 DG 12 C DG 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 2 B DC 2 1_555 C N2 DG 12 C DG 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 B DC 3 1_555 C N1 DG 11 C DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 B DC 3 1_555 C O6 DG 11 C DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 B DC 3 1_555 C N2 DG 11 C DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 B DT 4 1_555 C N1 DA 10 C DA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 B DT 4 1_555 C N6 DA 10 C DA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DG 5 B DG 5 1_555 C N3 DC 9 C DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 DG 5 B DG 5 1_555 C O2 DC 9 C DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 DG 5 B DG 5 1_555 C N4 DC 9 C DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 6 B DG 6 1_555 C N3 DC 8 C DC 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 6 B DG 6 1_555 C O2 DC 8 C DC 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 6 B DG 6 1_555 C N4 DC 8 C DC 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DA 7 B DA 7 1_555 C N3 DT 7 C DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N6 DA 7 B DA 7 1_555 C O4 DT 7 C DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 8 B DG 8 1_555 C N3 DC 6 C DC 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 B DG 8 1_555 C O2 DC 6 C DC 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 B DG 8 1_555 C N4 DC 6 C DC 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 9 B DC 9 1_555 C N1 DG 5 C DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 9 B DC 9 1_555 C O6 DG 5 C DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 9 B DC 9 1_555 C N2 DG 5 C DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 10 B DG 10 1_555 C N3 DC 4 C DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 10 B DG 10 1_555 C O2 DC 4 C DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 10 B DG 10 1_555 C N4 DC 4 C DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DC 11 B DC 11 1_555 C N1 DG 3 C DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N4 DC 11 B DC 11 1_555 C O6 DG 3 C DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O2 DC 11 B DC 11 1_555 C N2 DG 3 C DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 156 n n N1 C6 DCP sing 157 n n N1 C1' DCP sing 158 n n C2 N3 DCP sing 159 n n C2 O2 DCP doub 160 n n N3 C4 DCP doub 161 n n C4 C5 DCP sing 162 n n C4 N4 DCP sing 163 n n C5 C6 DCP doub 164 n n C5 H5 DCP sing 165 n n C6 H6 DCP sing 166 n n N4 HN41 DCP sing 167 n n N4 HN42 DCP sing 168 n n C1' C2' DCP sing 169 n n C1' O4' DCP sing 170 n n C1' H1' DCP sing 171 n n C2' C3' DCP sing 172 n n C2' "H2'1" DCP sing 173 n n C2' "H2'2" DCP sing 174 n n C3' C4' DCP sing 175 n n C3' O3' DCP sing 176 n n C3' H3' DCP sing 177 n n C4' O4' DCP sing 178 n n C4' C5' DCP sing 179 n n C4' H4' DCP sing 180 n n O3' HO3' DCP sing 181 n n C5' O5' DCP sing 182 n n C5' "H5'1" DCP sing 183 n n C5' "H5'2" DCP sing 184 n n O5' PA DCP sing 185 n n PA O1A DCP doub 186 n n PA O2A DCP sing 187 n n PA O3A DCP sing 188 n n O2A HOA2 DCP sing 189 n n O3A PB DCP sing 190 n n PB O1B DCP doub 191 n n PB O2B DCP sing 192 n n PB O3B DCP sing 193 n n O2B HOB2 DCP sing 194 n n O3B PG DCP sing 195 n n PG O1G DCP doub 196 n n PG O2G DCP sing 197 n n PG O3G DCP sing 198 n n O2G HOG2 DCP sing 199 n n O3G HOG3 DCP sing 200 n n # _atom_sites.entry_id 6AS7 _atom_sites.fract_transf_matrix[1][1] 0.006587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DCP A 1 1301 201 DCP DCP . E 5 MG A 1 1302 301 MG MG . F 5 MG A 1 1303 302 MG MG . G 6 CO B 1 101 402 CO CO . H 6 CO C 1 401 401 CO CO . I 7 HOH B 1 201 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . D 4 33.15 -8.281 22.807 1 54.43 ? N1 DCP 1301 A 1 HETATM 2 C C2 DCP . . . D 4 34.175 -7.974 23.667 1 52.19 ? C2 DCP 1301 A 1 HETATM 3 N N3 DCP . . . D 4 33.96 -7.142 24.735 1 56.71 ? N3 DCP 1301 A 1 HETATM 4 C C4 DCP . . . D 4 32.727 -6.621 24.998 1 59.24 ? C4 DCP 1301 A 1 HETATM 5 C C5 DCP . . . D 4 31.633 -6.923 24.129 1 55.97 ? C5 DCP 1301 A 1 HETATM 6 C C6 DCP . . . D 4 31.869 -7.758 23.058 1 53.29 ? C6 DCP 1301 A 1 HETATM 7 O O2 DCP . . . D 4 35.299 -8.419 23.469 1 42.85 ? O2 DCP 1301 A 1 HETATM 8 N N4 DCP . . . D 4 32.533 -5.787 26.088 1 53.21 ? N4 DCP 1301 A 1 HETATM 9 C C1' DCP . . . D 4 33.398 -9.19 21.632 1 68.17 ? C1' DCP 1301 A 1 HETATM 10 C C2' DCP . . . D 4 33.363 -10.658 22.074 1 75.03 ? C2' DCP 1301 A 1 HETATM 11 C C3' DCP . . . D 4 31.917 -11.084 21.768 1 80.71 ? C3' DCP 1301 A 1 HETATM 12 C C4' DCP . . . D 4 31.651 -10.312 20.438 1 85.26 ? C4' DCP 1301 A 1 HETATM 13 O O4' DCP . . . D 4 32.374 -9.035 20.61 1 79.83 ? O4' DCP 1301 A 1 HETATM 14 O O3' DCP . . . D 4 31.881 -12.51 21.55 1 72.99 ? O3' DCP 1301 A 1 HETATM 15 C C5' DCP . . . D 4 30.129 -10.003 20.201 1 98.09 ? C5' DCP 1301 A 1 HETATM 16 O O5' DCP . . . D 4 29.631 -9.001 21.132 1 112.01 ? O5' DCP 1301 A 1 HETATM 17 P PA DCP . . . D 4 28.178 -9.348 21.835 1 117.68 ? PA DCP 1301 A 1 HETATM 18 O O1A DCP . . . D 4 27.233 -9.886 20.827 1 118.72 ? O1A DCP 1301 A 1 HETATM 19 O O2A DCP . . . D 4 27.567 -7.982 22.443 1 115.6 ? O2A DCP 1301 A 1 HETATM 20 O O3A DCP . . . D 4 28.42 -10.422 23.069 1 127.37 ? O3A DCP 1301 A 1 HETATM 21 P PB DCP . . . D 4 28.094 -12.035 22.795 1 134.46 ? PB DCP 1301 A 1 HETATM 22 O O1B DCP . . . D 4 27.857 -12.355 21.234 1 136.77 ? O1B DCP 1301 A 1 HETATM 23 O O2B DCP . . . D 4 29.273 -12.819 23.246 1 134.81 ? O2B DCP 1301 A 1 HETATM 24 O O3B DCP . . . D 4 26.781 -12.517 23.691 1 136.06 ? O3B DCP 1301 A 1 HETATM 25 P PG DCP . . . D 4 25.338 -12.609 22.901 1 135.81 ? PG DCP 1301 A 1 HETATM 26 O O1G DCP . . . D 4 25.35 -11.821 21.506 1 136.41 ? O1G DCP 1301 A 1 HETATM 27 O O2G DCP . . . D 4 24.969 -14.136 22.641 1 133.72 ? O2G DCP 1301 A 1 HETATM 28 O O3G DCP . . . D 4 24.281 -12.012 23.753 1 135.17 ? O3G DCP 1301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #