data_6AS8 # _model_server_result.job_id WhfJZaeSlocqrFbUpOo0DA _model_server_result.datetime_utc '2024-11-05 09:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6as8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6AS8 # _exptl.entry_id 6AS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ortho-biphenyl-2'-carboxyl N-acetyl-beta-galactosaminoside" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AS8 _cell.length_a 50.957 _cell.length_b 51.519 _cell.length_c 117.496 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C21 H23 N O8' _chem_comp.formula_weight 417.409 _chem_comp.id BTG _chem_comp.mon_nstd_flag n _chem_comp.name "ortho-biphenyl-2'-carboxyl N-acetyl-beta-galactosaminoside" _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms "2'-{[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]oxy}[1,1'-biphenyl]-3-carboxylic acid" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 BTG sing 70 n n C6 O6 BTG sing 71 n n C4 C5 BTG sing 72 n n C4 O4 BTG sing 73 n n C4 C3 BTG sing 74 n n C5 O5 BTG sing 75 n n O3 C3 BTG sing 76 n n C3 C2 BTG sing 77 n n O5 C1 BTG sing 78 n n C2 C1 BTG sing 79 n n C2 N2 BTG sing 80 n n C1 O1 BTG sing 81 n n N2 C7 BTG sing 82 n n O1 C11 BTG sing 83 n n C7 O7 BTG doub 84 n n C7 C8 BTG sing 85 n n C12 C11 BTG doub 86 n y C12 C13 BTG sing 87 n y C11 C16 BTG sing 88 n y C13 C14 BTG doub 89 n y C16 C17 BTG sing 90 n n C16 C15 BTG doub 91 n y C14 C15 BTG sing 92 n y C17 C18 BTG doub 93 n y C17 C25 BTG sing 94 n y C18 C19 BTG sing 95 n y C25 C21 BTG doub 96 n y C19 C20 BTG doub 97 n y O23 C22 BTG doub 98 n n C21 C20 BTG sing 99 n y C21 C22 BTG sing 100 n n C22 O24 BTG sing 101 n n C13 H131 BTG sing 102 n n C15 H151 BTG sing 103 n n C20 H201 BTG sing 104 n n C2 H2 BTG sing 105 n n O3 HO3 BTG sing 106 n n C3 H3 BTG sing 107 n n C4 H4 BTG sing 108 n n O4 HO4 BTG sing 109 n n C5 H5 BTG sing 110 n n C6 H61 BTG sing 111 n n C6 H62 BTG sing 112 n n O6 HO6 BTG sing 113 n n C1 H1 BTG sing 114 n n C12 H121 BTG sing 115 n n C14 H141 BTG sing 116 n n C18 H181 BTG sing 117 n n C19 H191 BTG sing 118 n n O24 H1A BTG sing 119 n n C25 H251 BTG sing 120 n n N2 HN2 BTG sing 121 n n C8 H81 BTG sing 122 n n C8 H82 BTG sing 123 n n C8 H83 BTG sing 124 n n # _atom_sites.entry_id 6AS8 _atom_sites.fract_transf_matrix[1][1] 0.019624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTG A 1 201 1 BTG LIG . D 2 BTG B 1 201 2 BTG LIG . E 3 HOH A 1 301 53 HOH HOH . E 3 HOH A 2 302 37 HOH HOH . E 3 HOH A 3 303 46 HOH HOH . E 3 HOH A 4 304 60 HOH HOH . E 3 HOH A 5 305 32 HOH HOH . E 3 HOH A 6 306 88 HOH HOH . E 3 HOH A 7 307 114 HOH HOH . E 3 HOH A 8 308 12 HOH HOH . E 3 HOH A 9 309 27 HOH HOH . E 3 HOH A 10 310 70 HOH HOH . E 3 HOH A 11 311 96 HOH HOH . E 3 HOH A 12 312 2 HOH HOH . E 3 HOH A 13 313 13 HOH HOH . E 3 HOH A 14 314 15 HOH HOH . E 3 HOH A 15 315 18 HOH HOH . E 3 HOH A 16 316 9 HOH HOH . E 3 HOH A 17 317 10 HOH HOH . E 3 HOH A 18 318 120 HOH HOH . E 3 HOH A 19 319 94 HOH HOH . E 3 HOH A 20 320 102 HOH HOH . E 3 HOH A 21 321 23 HOH HOH . E 3 HOH A 22 322 109 HOH HOH . E 3 HOH A 23 323 14 HOH HOH . E 3 HOH A 24 324 56 HOH HOH . E 3 HOH A 25 325 103 HOH HOH . E 3 HOH A 26 326 76 HOH HOH . E 3 HOH A 27 327 24 HOH HOH . E 3 HOH A 28 328 78 HOH HOH . E 3 HOH A 29 329 121 HOH HOH . E 3 HOH A 30 330 29 HOH HOH . E 3 HOH A 31 331 84 HOH HOH . E 3 HOH A 32 332 17 HOH HOH . E 3 HOH A 33 333 34 HOH HOH . E 3 HOH A 34 334 77 HOH HOH . E 3 HOH A 35 335 104 HOH HOH . E 3 HOH A 36 336 113 HOH HOH . E 3 HOH A 37 337 52 HOH HOH . E 3 HOH A 38 338 55 HOH HOH . E 3 HOH A 39 339 106 HOH HOH . E 3 HOH A 40 340 67 HOH HOH . E 3 HOH A 41 341 30 HOH HOH . E 3 HOH A 42 342 26 HOH HOH . E 3 HOH A 43 343 58 HOH HOH . E 3 HOH A 44 344 36 HOH HOH . E 3 HOH A 45 345 110 HOH HOH . E 3 HOH A 46 346 47 HOH HOH . E 3 HOH A 47 347 108 HOH HOH . E 3 HOH A 48 348 98 HOH HOH . E 3 HOH A 49 349 33 HOH HOH . E 3 HOH A 50 350 41 HOH HOH . E 3 HOH A 51 351 116 HOH HOH . E 3 HOH A 52 352 97 HOH HOH . E 3 HOH A 53 353 100 HOH HOH . E 3 HOH A 54 354 107 HOH HOH . E 3 HOH A 55 355 92 HOH HOH . E 3 HOH A 56 356 127 HOH HOH . E 3 HOH A 57 357 119 HOH HOH . E 3 HOH A 58 358 81 HOH HOH . E 3 HOH A 59 359 99 HOH HOH . E 3 HOH A 60 360 86 HOH HOH . E 3 HOH A 61 361 93 HOH HOH . E 3 HOH A 62 362 43 HOH HOH . E 3 HOH A 63 363 122 HOH HOH . F 3 HOH B 1 301 125 HOH HOH . F 3 HOH B 2 302 7 HOH HOH . F 3 HOH B 3 303 71 HOH HOH . F 3 HOH B 4 304 31 HOH HOH . F 3 HOH B 5 305 21 HOH HOH . F 3 HOH B 6 306 35 HOH HOH . F 3 HOH B 7 307 62 HOH HOH . F 3 HOH B 8 308 5 HOH HOH . F 3 HOH B 9 309 42 HOH HOH . F 3 HOH B 10 310 39 HOH HOH . F 3 HOH B 11 311 72 HOH HOH . F 3 HOH B 12 312 3 HOH HOH . F 3 HOH B 13 313 16 HOH HOH . F 3 HOH B 14 314 4 HOH HOH . F 3 HOH B 15 315 11 HOH HOH . F 3 HOH B 16 316 105 HOH HOH . F 3 HOH B 17 317 115 HOH HOH . F 3 HOH B 18 318 44 HOH HOH . F 3 HOH B 19 319 101 HOH HOH . F 3 HOH B 20 320 48 HOH HOH . F 3 HOH B 21 321 111 HOH HOH . F 3 HOH B 22 322 25 HOH HOH . F 3 HOH B 23 323 63 HOH HOH . F 3 HOH B 24 324 73 HOH HOH . F 3 HOH B 25 325 118 HOH HOH . F 3 HOH B 26 326 74 HOH HOH . F 3 HOH B 27 327 79 HOH HOH . F 3 HOH B 28 328 20 HOH HOH . F 3 HOH B 29 329 117 HOH HOH . F 3 HOH B 30 330 75 HOH HOH . F 3 HOH B 31 331 40 HOH HOH . F 3 HOH B 32 332 112 HOH HOH . F 3 HOH B 33 333 28 HOH HOH . F 3 HOH B 34 334 8 HOH HOH . F 3 HOH B 35 335 80 HOH HOH . F 3 HOH B 36 336 38 HOH HOH . F 3 HOH B 37 337 66 HOH HOH . F 3 HOH B 38 338 91 HOH HOH . F 3 HOH B 39 339 45 HOH HOH . F 3 HOH B 40 340 50 HOH HOH . F 3 HOH B 41 341 6 HOH HOH . F 3 HOH B 42 342 123 HOH HOH . F 3 HOH B 43 343 19 HOH HOH . F 3 HOH B 44 344 82 HOH HOH . F 3 HOH B 45 345 65 HOH HOH . F 3 HOH B 46 346 83 HOH HOH . F 3 HOH B 47 347 49 HOH HOH . F 3 HOH B 48 348 64 HOH HOH . F 3 HOH B 49 349 89 HOH HOH . F 3 HOH B 50 350 95 HOH HOH . F 3 HOH B 51 351 59 HOH HOH . F 3 HOH B 52 352 61 HOH HOH . F 3 HOH B 53 353 68 HOH HOH . F 3 HOH B 54 354 1 HOH HOH . F 3 HOH B 55 355 90 HOH HOH . F 3 HOH B 56 356 51 HOH HOH . F 3 HOH B 57 357 87 HOH HOH . F 3 HOH B 58 358 85 HOH HOH . F 3 HOH B 59 359 22 HOH HOH . F 3 HOH B 60 360 124 HOH HOH . F 3 HOH B 61 361 69 HOH HOH . F 3 HOH B 62 362 126 HOH HOH . F 3 HOH B 63 363 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 BTG . . . D 2 -10.823 93.796 132.179 1 31.68 ? C13 BTG 201 B 1 HETATM 2 C C15 BTG . . . D 2 -9.575 94.561 134.083 1 28.21 ? C15 BTG 201 B 1 HETATM 3 C C17 BTG . . . D 2 -8.265 96.717 133.99 1 26.12 ? C17 BTG 201 B 1 HETATM 4 C C20 BTG . . . D 2 -6.613 98.636 135.124 1 26.99 ? C20 BTG 201 B 1 HETATM 5 C C21 BTG . . . D 2 -7.909 98.964 134.757 1 22.43 ? C21 BTG 201 B 1 HETATM 6 C C22 BTG . . . D 2 -8.428 100.369 134.975 1 35.96 ? C22 BTG 201 B 1 HETATM 7 C C2 BTG . . . D 2 -8.976 98.461 129.571 1 24.15 ? C2 BTG 201 B 1 HETATM 8 C C7 BTG . . . D 2 -9.736 100.236 131.14 1 22.93 ? C7 BTG 201 B 1 HETATM 9 O O3 BTG . . . D 2 -8.461 99.843 127.705 1 26.6 ? O3 BTG 201 B 1 HETATM 10 C C3 BTG . . . D 2 -8.925 98.563 128.065 1 26.83 ? C3 BTG 201 B 1 HETATM 11 C C4 BTG . . . D 2 -7.985 97.514 127.52 1 25.55 ? C4 BTG 201 B 1 HETATM 12 O O4 BTG . . . D 2 -6.692 97.739 128.027 1 22.37 ? O4 BTG 201 B 1 HETATM 13 C C5 BTG . . . D 2 -8.467 96.153 127.961 1 28.38 ? C5 BTG 201 B 1 HETATM 14 C C6 BTG . . . D 2 -7.544 95.086 127.42 1 24.32 ? C6 BTG 201 B 1 HETATM 15 O O6 BTG . . . D 2 -6.432 94.946 128.275 1 25.29 ? O6 BTG 201 B 1 HETATM 16 O O5 BTG . . . D 2 -8.48 96.119 129.369 1 23.28 ? O5 BTG 201 B 1 HETATM 17 C C1 BTG . . . D 2 -9.319 97.054 130.002 1 27.86 ? C1 BTG 201 B 1 HETATM 18 O O1 BTG . . . D 2 -9.138 97.018 131.396 1 22.63 ? O1 BTG 201 B 1 HETATM 19 C C11 BTG . . . D 2 -9.584 95.854 132.054 1 30.26 ? C11 BTG 201 B 1 HETATM 20 C C12 BTG . . . D 2 -10.418 94.912 131.461 1 29.73 ? C12 BTG 201 B 1 HETATM 21 C C14 BTG . . . D 2 -10.401 93.619 133.488 1 34.12 ? C14 BTG 201 B 1 HETATM 22 C C16 BTG . . . D 2 -9.169 95.675 133.364 1 25.81 ? C16 BTG 201 B 1 HETATM 23 C C18 BTG . . . D 2 -6.966 96.39 134.351 1 26.01 ? C18 BTG 201 B 1 HETATM 24 C C19 BTG . . . D 2 -6.141 97.348 134.92 1 26.09 ? C19 BTG 201 B 1 HETATM 25 O O23 BTG . . . D 2 -7.706 101.358 134.685 1 31.03 ? O23 BTG 201 B 1 HETATM 26 O O24 BTG . . . D 2 -9.583 100.552 135.444 1 43.12 ? O24 BTG 201 B 1 HETATM 27 C C25 BTG . . . D 2 -8.732 98.005 134.191 1 27.47 ? C25 BTG 201 B 1 HETATM 28 N N2 BTG . . . D 2 -9.988 99.331 130.072 1 25.66 ? N2 BTG 201 B 1 HETATM 29 C C8 BTG . . . D 2 -10.854 101.131 131.633 1 24.76 ? C8 BTG 201 B 1 HETATM 30 O O7 BTG . . . D 2 -8.641 100.303 131.661 1 24.48 ? O7 BTG 201 B 1 HETATM 31 H H131 BTG . . . D 2 -11.405 93.133 131.761 1 38.02 ? H131 BTG 201 B 1 HETATM 32 H H151 BTG . . . D 2 -9.275 94.437 135.003 1 33.85 ? H151 BTG 201 B 1 HETATM 33 H H201 BTG . . . D 2 -6.033 99.311 135.522 1 32.38 ? H201 BTG 201 B 1 HETATM 34 H H2 BTG . . . D 2 -8.111 98.715 129.945 1 28.99 ? H2 BTG 201 B 1 HETATM 35 H HO3 BTG . . . D 2 -9.015 100.202 127.109 1 31.92 ? HO3 BTG 201 B 1 HETATM 36 H H3 BTG . . . D 2 -9.82 98.423 127.697 1 32.19 ? H3 BTG 201 B 1 HETATM 37 H H4 BTG . . . D 2 -7.97 97.559 126.544 1 30.66 ? H4 BTG 201 B 1 HETATM 38 H HO4 BTG . . . D 2 -6.13 97.878 127.353 1 26.84 ? HO4 BTG 201 B 1 HETATM 39 H H5 BTG . . . D 2 -9.373 96.003 127.623 1 34.06 ? H5 BTG 201 B 1 HETATM 40 H H61 BTG . . . D 2 -7.237 95.342 126.526 1 29.18 ? H61 BTG 201 B 1 HETATM 41 H H62 BTG . . . D 2 -8.025 94.234 127.368 1 29.18 ? H62 BTG 201 B 1 HETATM 42 H HO6 BTG . . . D 2 -5.682 95.031 127.802 1 30.34 ? HO6 BTG 201 B 1 HETATM 43 H H1 BTG . . . D 2 -10.253 96.86 129.785 1 33.44 ? H1 BTG 201 B 1 HETATM 44 H H121 BTG . . . D 2 -10.716 95.035 130.541 1 35.68 ? H121 BTG 201 B 1 HETATM 45 H H141 BTG . . . D 2 -10.687 92.833 133.991 1 40.95 ? H141 BTG 201 B 1 HETATM 46 H H181 BTG . . . D 2 -6.634 95.483 134.21 1 31.21 ? H181 BTG 201 B 1 HETATM 47 H H191 BTG . . . D 2 -5.228 97.116 135.177 1 31.31 ? H191 BTG 201 B 1 HETATM 48 H H251 BTG . . . D 2 -9.645 98.238 133.933 1 32.97 ? H251 BTG 201 B 1 HETATM 49 H HN2 BTG . . . D 2 -10.821 99.302 129.703 1 30.79 ? HN2 BTG 201 B 1 HETATM 50 H H81 BTG . . . D 2 -11.205 101.657 130.885 1 29.71 ? H81 BTG 201 B 1 HETATM 51 H H82 BTG . . . D 2 -11.571 100.579 132.01 1 29.71 ? H82 BTG 201 B 1 HETATM 52 H H83 BTG . . . D 2 -10.509 101.734 132.324 1 29.71 ? H83 BTG 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #