data_6ASL # _model_server_result.job_id Vor4A22sYhMnQEjBsYf3aA _model_server_result.datetime_utc '2024-11-15 09:43:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6asl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6ASL # _exptl.entry_id 6ASL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.26 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LUMIFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ASL _cell.length_a 87.079 _cell.length_b 87.079 _cell.length_c 194.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ASL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -97.47 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H12 N4 O2' _chem_comp.formula_weight 256.26 _chem_comp.id LFN _chem_comp.mon_nstd_flag . _chem_comp.name LUMIFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8,10-TRIMETHYLBENZO[G]PTERIDINE-2,4(3H,10H)-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 LFN sing 235 n y N1 C10 LFN doub 236 n y C2 O2 LFN doub 237 n n C2 N3 LFN sing 238 n y C10 C4A LFN sing 239 n y C10 N10 LFN sing 240 n y N3 C4 LFN sing 241 n y N3 H3 LFN sing 242 n n C4 O4 LFN doub 243 n n C4 C4A LFN sing 244 n y C4A N5 LFN doub 245 n y N5 C5A LFN sing 246 n y C5A C6 LFN doub 247 n y C5A C9A LFN sing 248 n y C6 C7 LFN sing 249 n y C6 H6 LFN sing 250 n n C9A C9 LFN doub 251 n y C9A N10 LFN sing 252 n y C7 C7M LFN sing 253 n n C7 C8 LFN doub 254 n y C7M H7M1 LFN sing 255 n n C7M H7M2 LFN sing 256 n n C7M H7M3 LFN sing 257 n n C8 C8M LFN sing 258 n n C8 C9 LFN sing 259 n y C8M H8M1 LFN sing 260 n n C8M H8M2 LFN sing 261 n n C8M H8M3 LFN sing 262 n n C9 H9 LFN sing 263 n n N10 C1' LFN sing 264 n n C1' "H1'1" LFN sing 265 n n C1' "H1'2" LFN sing 266 n n C1' "H1'3" LFN sing 267 n n # _atom_sites.entry_id 6ASL _atom_sites.fract_transf_matrix[1][1] 0.011484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 501 501 FMN FMN . C 3 LFN A 1 502 502 LFN LFN . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . D 4 HOH A 39 639 639 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 641 HOH HOH . D 4 HOH A 42 642 642 HOH HOH . D 4 HOH A 43 643 643 HOH HOH . D 4 HOH A 44 644 644 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 656 HOH HOH . D 4 HOH A 57 657 657 HOH HOH . D 4 HOH A 58 658 658 HOH HOH . D 4 HOH A 59 659 659 HOH HOH . D 4 HOH A 60 660 660 HOH HOH . D 4 HOH A 61 661 661 HOH HOH . D 4 HOH A 62 662 662 HOH HOH . D 4 HOH A 63 663 663 HOH HOH . D 4 HOH A 64 664 664 HOH HOH . D 4 HOH A 65 665 665 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 667 HOH HOH . D 4 HOH A 68 668 668 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 676 HOH HOH . D 4 HOH A 77 677 677 HOH HOH . D 4 HOH A 78 678 678 HOH HOH . D 4 HOH A 79 679 679 HOH HOH . D 4 HOH A 80 680 680 HOH HOH . D 4 HOH A 81 681 681 HOH HOH . D 4 HOH A 82 682 682 HOH HOH . D 4 HOH A 83 683 683 HOH HOH . D 4 HOH A 84 684 684 HOH HOH . D 4 HOH A 85 685 685 HOH HOH . D 4 HOH A 86 686 686 HOH HOH . D 4 HOH A 87 687 687 HOH HOH . D 4 HOH A 88 688 688 HOH HOH . D 4 HOH A 89 689 689 HOH HOH . D 4 HOH A 90 690 690 HOH HOH . D 4 HOH A 91 691 691 HOH HOH . D 4 HOH A 92 692 692 HOH HOH . D 4 HOH A 93 693 693 HOH HOH . D 4 HOH A 94 694 694 HOH HOH . D 4 HOH A 95 695 695 HOH HOH . D 4 HOH A 96 696 696 HOH HOH . D 4 HOH A 97 697 697 HOH HOH . D 4 HOH A 98 698 698 HOH HOH . D 4 HOH A 99 699 699 HOH HOH . D 4 HOH A 100 700 700 HOH HOH . D 4 HOH A 101 701 701 HOH HOH . D 4 HOH A 102 702 702 HOH HOH . D 4 HOH A 103 703 703 HOH HOH . D 4 HOH A 104 704 704 HOH HOH . D 4 HOH A 105 705 705 HOH HOH . D 4 HOH A 106 706 706 HOH HOH . D 4 HOH A 107 707 707 HOH HOH . D 4 HOH A 108 708 708 HOH HOH . D 4 HOH A 109 709 709 HOH HOH . D 4 HOH A 110 710 710 HOH HOH . D 4 HOH A 111 711 711 HOH HOH . D 4 HOH A 112 712 712 HOH HOH . D 4 HOH A 113 713 713 HOH HOH . D 4 HOH A 114 714 714 HOH HOH . D 4 HOH A 115 715 715 HOH HOH . D 4 HOH A 116 716 716 HOH HOH . D 4 HOH A 117 717 717 HOH HOH . D 4 HOH A 118 718 718 HOH HOH . D 4 HOH A 119 719 719 HOH HOH . D 4 HOH A 120 720 720 HOH HOH . D 4 HOH A 121 721 721 HOH HOH . D 4 HOH A 122 722 722 HOH HOH . D 4 HOH A 123 723 723 HOH HOH . D 4 HOH A 124 724 724 HOH HOH . D 4 HOH A 125 725 725 HOH HOH . D 4 HOH A 126 726 726 HOH HOH . D 4 HOH A 127 727 727 HOH HOH . D 4 HOH A 128 728 728 HOH HOH . D 4 HOH A 129 729 729 HOH HOH . D 4 HOH A 130 730 730 HOH HOH . D 4 HOH A 131 731 731 HOH HOH . D 4 HOH A 132 732 732 HOH HOH . D 4 HOH A 133 733 733 HOH HOH . D 4 HOH A 134 734 734 HOH HOH . D 4 HOH A 135 735 735 HOH HOH . D 4 HOH A 136 736 736 HOH HOH . D 4 HOH A 137 737 737 HOH HOH . D 4 HOH A 138 738 738 HOH HOH . D 4 HOH A 139 739 739 HOH HOH . D 4 HOH A 140 740 740 HOH HOH . D 4 HOH A 141 741 741 HOH HOH . D 4 HOH A 142 742 742 HOH HOH . D 4 HOH A 143 743 743 HOH HOH . D 4 HOH A 144 744 744 HOH HOH . D 4 HOH A 145 745 745 HOH HOH . D 4 HOH A 146 746 746 HOH HOH . D 4 HOH A 147 747 747 HOH HOH . D 4 HOH A 148 748 748 HOH HOH . D 4 HOH A 149 749 749 HOH HOH . D 4 HOH A 150 750 750 HOH HOH . D 4 HOH A 151 751 751 HOH HOH . D 4 HOH A 152 752 752 HOH HOH . D 4 HOH A 153 753 753 HOH HOH . D 4 HOH A 154 754 754 HOH HOH . D 4 HOH A 155 755 755 HOH HOH . D 4 HOH A 156 756 756 HOH HOH . D 4 HOH A 157 757 757 HOH HOH . D 4 HOH A 158 758 758 HOH HOH . D 4 HOH A 159 759 759 HOH HOH . D 4 HOH A 160 760 760 HOH HOH . D 4 HOH A 161 761 761 HOH HOH . D 4 HOH A 162 762 762 HOH HOH . D 4 HOH A 163 763 763 HOH HOH . D 4 HOH A 164 764 764 HOH HOH . D 4 HOH A 165 765 765 HOH HOH . D 4 HOH A 166 766 766 HOH HOH . D 4 HOH A 167 767 767 HOH HOH . D 4 HOH A 168 768 768 HOH HOH . D 4 HOH A 169 769 769 HOH HOH . D 4 HOH A 170 770 770 HOH HOH . D 4 HOH A 171 771 771 HOH HOH . D 4 HOH A 172 772 772 HOH HOH . D 4 HOH A 173 773 773 HOH HOH . D 4 HOH A 174 774 774 HOH HOH . D 4 HOH A 175 775 775 HOH HOH . D 4 HOH A 176 776 776 HOH HOH . D 4 HOH A 177 777 777 HOH HOH . D 4 HOH A 178 778 778 HOH HOH . D 4 HOH A 179 779 779 HOH HOH . D 4 HOH A 180 780 780 HOH HOH . D 4 HOH A 181 781 781 HOH HOH . D 4 HOH A 182 782 782 HOH HOH . D 4 HOH A 183 783 783 HOH HOH . D 4 HOH A 184 784 784 HOH HOH . D 4 HOH A 185 785 785 HOH HOH . D 4 HOH A 186 786 786 HOH HOH . D 4 HOH A 187 787 787 HOH HOH . D 4 HOH A 188 788 788 HOH HOH . D 4 HOH A 189 789 789 HOH HOH . D 4 HOH A 190 790 790 HOH HOH . D 4 HOH A 191 791 791 HOH HOH . D 4 HOH A 192 792 792 HOH HOH . D 4 HOH A 193 793 793 HOH HOH . D 4 HOH A 194 794 794 HOH HOH . D 4 HOH A 195 795 795 HOH HOH . D 4 HOH A 196 796 796 HOH HOH . D 4 HOH A 197 797 797 HOH HOH . D 4 HOH A 198 798 798 HOH HOH . D 4 HOH A 199 799 799 HOH HOH . D 4 HOH A 200 800 800 HOH HOH . D 4 HOH A 201 801 801 HOH HOH . D 4 HOH A 202 802 802 HOH HOH . D 4 HOH A 203 803 803 HOH HOH . D 4 HOH A 204 804 804 HOH HOH . D 4 HOH A 205 805 805 HOH HOH . D 4 HOH A 206 806 806 HOH HOH . D 4 HOH A 207 807 807 HOH HOH . D 4 HOH A 208 808 808 HOH HOH . D 4 HOH A 209 809 809 HOH HOH . D 4 HOH A 210 810 810 HOH HOH . D 4 HOH A 211 811 811 HOH HOH . D 4 HOH A 212 812 812 HOH HOH . D 4 HOH A 213 813 813 HOH HOH . D 4 HOH A 214 814 814 HOH HOH . D 4 HOH A 215 815 815 HOH HOH . D 4 HOH A 216 816 816 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LFN . . . C 3 -19.145 14.507 -30.681 1 62.6 ? N1 LFN 502 A 1 HETATM 2 C C2 LFN . . . C 3 -18.216 15.081 -31.476 1 61.99 ? C2 LFN 502 A 1 HETATM 3 C C10 LFN . . . C 3 -19.163 13.18 -30.464 1 75.4 ? C10 LFN 502 A 1 HETATM 4 O O2 LFN . . . C 3 -18.156 16.248 -31.666 1 42.13 ? O2 LFN 502 A 1 HETATM 5 N N3 LFN . . . C 3 -17.291 14.306 -32.08 1 58.56 ? N3 LFN 502 A 1 HETATM 6 C C4 LFN . . . C 3 -17.283 12.993 -31.897 1 60.88 ? C4 LFN 502 A 1 HETATM 7 O O4 LFN . . . C 3 -16.448 12.372 -32.447 1 37.72 ? O4 LFN 502 A 1 HETATM 8 C C4A LFN . . . C 3 -18.227 12.396 -31.077 1 78.02 ? C4A LFN 502 A 1 HETATM 9 N N5 LFN . . . C 3 -18.223 11.051 -30.871 1 81.24 ? N5 LFN 502 A 1 HETATM 10 C C5A LFN . . . C 3 -19.15 10.496 -30.071 1 90.16 ? C5A LFN 502 A 1 HETATM 11 C C6 LFN . . . C 3 -19.145 9.097 -29.865 1 96.25 ? C6 LFN 502 A 1 HETATM 12 C C9A LFN . . . C 3 -20.095 11.287 -29.454 1 87.8 ? C9A LFN 502 A 1 HETATM 13 C C7 LFN . . . C 3 -20.094 8.511 -29.036 1 91.05 ? C7 LFN 502 A 1 HETATM 14 C C7M LFN . . . C 3 -19.931 6.999 -28.92 1 95.92 ? C7M LFN 502 A 1 HETATM 15 C C8 LFN . . . C 3 -21.047 9.303 -28.408 1 82.45 ? C8 LFN 502 A 1 HETATM 16 C C8M LFN . . . C 3 -22.119 8.738 -27.478 1 74.12 ? C8M LFN 502 A 1 HETATM 17 C C9 LFN . . . C 3 -21.056 10.68 -28.606 1 91.22 ? C9 LFN 502 A 1 HETATM 18 N N10 LFN . . . C 3 -20.112 12.625 -29.649 1 74.42 ? N10 LFN 502 A 1 HETATM 19 C C1' LFN . . . C 3 -21.066 13.554 -29.026 1 74.68 ? C1' LFN 502 A 1 HETATM 20 H H3 LFN . . . C 3 -16.704 14.668 -32.594 1 70.28 ? H3 LFN 502 A 1 HETATM 21 H H6 LFN . . . C 3 -18.504 8.569 -30.282 1 115.5 ? H6 LFN 502 A 1 HETATM 22 H H7M1 LFN . . . C 3 -20.509 6.561 -29.565 1 115.1 ? H7M1 LFN 502 A 1 HETATM 23 H H7M2 LFN . . . C 3 -20.172 6.715 -28.025 1 115.1 ? H7M2 LFN 502 A 1 HETATM 24 H H7M3 LFN . . . C 3 -19.008 6.759 -29.098 1 115.1 ? H7M3 LFN 502 A 1 HETATM 25 H H8M1 LFN . . . C 3 -22.458 7.906 -27.844 1 88.94 ? H8M1 LFN 502 A 1 HETATM 26 H H8M2 LFN . . . C 3 -22.845 9.375 -27.397 1 88.94 ? H8M2 LFN 502 A 1 HETATM 27 H H8M3 LFN . . . C 3 -21.733 8.573 -26.603 1 88.94 ? H8M3 LFN 502 A 1 HETATM 28 H H9 LFN . . . C 3 -21.698 11.204 -28.185 1 109.47 ? H9 LFN 502 A 1 HETATM 29 H "H1'1" LFN . . . C 3 -21.957 13.382 -29.369 1 89.62 ? "H1'1" LFN 502 A 1 HETATM 30 H "H1'2" LFN . . . C 3 -21.059 13.428 -28.064 1 89.62 ? "H1'2" LFN 502 A 1 HETATM 31 H "H1'3" LFN . . . C 3 -20.811 14.467 -29.233 1 89.62 ? "H1'3" LFN 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #