data_6ASR # _model_server_result.job_id aFfgtsYuASHx3DF1cjjaKQ _model_server_result.datetime_utc '2024-12-21 16:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6asr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6ASR # _exptl.entry_id 6ASR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ASR _cell.length_a 164.924 _cell.length_b 164.924 _cell.length_c 164.924 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ASR _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,H,I 1 1 B,F,I 2 1 C,G,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 11 A LYS 11 1_555 E NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc2 A OE1 GLU 24 A GLU 24 1_555 D NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc3 A OE2 GLU 34 A GLU 34 1_555 E NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc4 A OD1 ASP 39 A ASP 39 1_555 D NI NI . A NI 101 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A OD2 ASP 39 A ASP 39 1_555 D NI NI . A NI 101 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc6 A OD2 ASP 52 A ASP 52 1_555 D NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc7 D NI NI . A NI 101 1_555 H O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc8 D NI NI . A NI 101 1_555 H O HOH . A HOH 222 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc9 E NI NI . A NI 102 1_555 H O HOH . A HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc10 E NI NI . A NI 102 12_555 C NE2 HIS 68 C HIS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc11 B OD1 ASP 28 B ASP 1017 1_555 F NI NI . B NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc12 B OD2 ASP 28 B ASP 1017 1_555 F NI NI . B NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 B OE1 GLU 30 B GLU 1019 1_555 F NI NI . B NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc14 B OE2 GLU 30 B GLU 1019 1_555 F NI NI . B NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc15 F NI NI . B NI 1101 1_555 I O HOH . B HOH 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc16 F NI NI . B NI 1101 1_555 C OD2 ASP 39 C ASP 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc17 C OE1 GLU 24 C GLU 24 1_555 G NI NI . C NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc18 C OD2 ASP 52 C ASP 52 1_555 G NI NI . C NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc19 G NI NI . C NI 101 1_555 J O HOH . C HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc20 G NI NI . C NI 101 1_555 J O HOH . C HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ASR _atom_sites.fract_transf_matrix[1][1] 0.006063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NI A 1 101 3 NI NI . E 3 NI A 1 102 4 NI NI . F 3 NI B 1 1101 1 NI NI . G 3 NI C 1 101 2 NI NI . H 4 HOH A 1 201 17 HOH HOH . H 4 HOH A 2 202 12 HOH HOH . H 4 HOH A 3 203 58 HOH HOH . H 4 HOH A 4 204 27 HOH HOH . H 4 HOH A 5 205 15 HOH HOH . H 4 HOH A 6 206 64 HOH HOH . H 4 HOH A 7 207 53 HOH HOH . H 4 HOH A 8 208 68 HOH HOH . H 4 HOH A 9 209 62 HOH HOH . H 4 HOH A 10 210 14 HOH HOH . H 4 HOH A 11 211 3 HOH HOH . H 4 HOH A 12 212 19 HOH HOH . H 4 HOH A 13 213 59 HOH HOH . H 4 HOH A 14 214 5 HOH HOH . H 4 HOH A 15 215 29 HOH HOH . H 4 HOH A 16 216 26 HOH HOH . H 4 HOH A 17 217 23 HOH HOH . H 4 HOH A 18 218 24 HOH HOH . H 4 HOH A 19 219 63 HOH HOH . H 4 HOH A 20 220 52 HOH HOH . H 4 HOH A 21 221 4 HOH HOH . H 4 HOH A 22 222 34 HOH HOH . H 4 HOH A 23 223 43 HOH HOH . H 4 HOH A 24 224 48 HOH HOH . H 4 HOH A 25 225 13 HOH HOH . H 4 HOH A 26 226 28 HOH HOH . H 4 HOH A 27 227 70 HOH HOH . H 4 HOH A 28 228 50 HOH HOH . H 4 HOH A 29 229 49 HOH HOH . H 4 HOH A 30 230 35 HOH HOH . H 4 HOH A 31 231 39 HOH HOH . H 4 HOH A 32 232 67 HOH HOH . H 4 HOH A 33 233 69 HOH HOH . I 4 HOH B 1 1201 46 HOH HOH . I 4 HOH B 2 1202 42 HOH HOH . I 4 HOH B 3 1203 30 HOH HOH . I 4 HOH B 4 1204 16 HOH HOH . I 4 HOH B 5 1205 2 HOH HOH . I 4 HOH B 6 1206 47 HOH HOH . I 4 HOH B 7 1207 61 HOH HOH . I 4 HOH B 8 1208 60 HOH HOH . I 4 HOH B 9 1209 73 HOH HOH . I 4 HOH B 10 1210 31 HOH HOH . I 4 HOH B 11 1211 55 HOH HOH . I 4 HOH B 12 1212 41 HOH HOH . I 4 HOH B 13 1213 45 HOH HOH . I 4 HOH B 14 1214 36 HOH HOH . I 4 HOH B 15 1215 66 HOH HOH . J 4 HOH C 1 201 71 HOH HOH . J 4 HOH C 2 202 18 HOH HOH . J 4 HOH C 3 203 22 HOH HOH . J 4 HOH C 4 204 11 HOH HOH . J 4 HOH C 5 205 9 HOH HOH . J 4 HOH C 6 206 44 HOH HOH . J 4 HOH C 7 207 56 HOH HOH . J 4 HOH C 8 208 54 HOH HOH . J 4 HOH C 9 209 21 HOH HOH . J 4 HOH C 10 210 51 HOH HOH . J 4 HOH C 11 211 72 HOH HOH . J 4 HOH C 12 212 10 HOH HOH . J 4 HOH C 13 213 32 HOH HOH . J 4 HOH C 14 214 37 HOH HOH . J 4 HOH C 15 215 1 HOH HOH . J 4 HOH C 16 216 8 HOH HOH . J 4 HOH C 17 217 7 HOH HOH . J 4 HOH C 18 218 38 HOH HOH . J 4 HOH C 19 219 20 HOH HOH . J 4 HOH C 20 220 6 HOH HOH . J 4 HOH C 21 221 33 HOH HOH . J 4 HOH C 22 222 25 HOH HOH . J 4 HOH C 23 223 40 HOH HOH . J 4 HOH C 24 224 57 HOH HOH . J 4 HOH C 25 225 65 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -46.571 _atom_site.Cartn_y 42.986 _atom_site.Cartn_z -0.326 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 545 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #