data_6ATK # _model_server_result.job_id 6yGQV7-SKlHC1lW2WWSASw _model_server_result.datetime_utc '2024-11-24 04:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6atk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1007}' # _entry.id 6ATK # _exptl.entry_id 6ATK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ATK _cell.length_a 153.82 _cell.length_b 153.82 _cell.length_c 322.12 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ATK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,H,L,M,N,O,P,Q,CA 1 1 B,D,I,J,R,S,T,U,AA,BA 2 1 C,F,K,V,W,X,Y,Z 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG A 1002 NAG 3 n G NAG 2 G 2 NAG A 1003 NAG 3 n H NAG 1 H 1 NAG A 1007 NAG 3 n H NAG 2 H 2 NAG A 1008 NAG 3 n I NAG 1 I 1 NAG B 1002 NAG 3 n I NAG 2 I 2 NAG B 1003 NAG 3 n J NAG 1 J 1 NAG B 1007 NAG 3 n J NAG 2 J 2 NAG B 1008 NAG 3 n K NAG 1 K 1 NAG C 1007 NAG 3 n K NAG 2 K 2 NAG C 1008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 699 A CYS 761 1_555 A SG CYS 706 A CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 736 A CYS 798 1_555 A SG CYS 772 A CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 699 B CYS 761 1_555 B SG CYS 706 B CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 736 B CYS 798 1_555 B SG CYS 772 B CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 699 C CYS 761 1_555 C SG CYS 706 C CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 736 C CYS 798 1_555 C SG CYS 772 C CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 D SG CYS 28 E CYS 317 1_555 D SG CYS 31 E CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 D SG CYS 51 E CYS 340 1_555 D SG CYS 97 E CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 D SG CYS 80 E CYS 369 1_555 D SG CYS 107 E CYS 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 E SG CYS 28 D CYS 317 1_555 E SG CYS 31 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 E SG CYS 51 D CYS 340 1_555 E SG CYS 97 D CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 F SG CYS 28 F CYS 317 1_555 F SG CYS 31 F CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 66 A ASN 128 1_555 L C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 172 A ASN 234 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 203 A ASN 265 1_555 N C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 257 A ASN 319 1_555 M C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 A ND2 ASN 511 A ASN 573 1_555 Q C1 NAG . A NAG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 A ND2 ASN 563 A ASN 625 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 A ND2 ASN 619 A ASN 681 1_555 O C1 NAG . A NAG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 B ND2 ASN 172 B ASN 234 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 B ND2 ASN 203 B ASN 265 1_555 R C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 B ND2 ASN 465 B ASN 527 1_555 S C1 NAG . B NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 B ND2 ASN 563 B ASN 625 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 B ND2 ASN 619 B ASN 681 1_555 T C1 NAG . B NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale13 C ND2 ASN 172 C ASN 234 1_555 V C1 NAG . C NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 C ND2 ASN 203 C ASN 265 1_555 W C1 NAG . C NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale15 C ND2 ASN 465 C ASN 527 1_555 Z C1 NAG . C NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale16 C ND2 ASN 563 C ASN 625 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale17 C ND2 ASN 619 C ASN 681 1_555 X C1 NAG . C NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 D ND2 ASN 37 E ASN 326 1_555 AA C1 NAG . E NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale19 D ND2 ASN 44 E ASN 333 1_555 BA C1 NAG . E NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale20 E ND2 ASN 37 D ASN 326 1_555 CA C1 NAG . D NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale21 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale22 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale23 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale24 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale25 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A NE2 HIS 326 A HIS 388 1_555 P ZN ZN . A ZN 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc2 A NE2 HIS 330 A HIS 392 1_555 P ZN ZN . A ZN 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A OE1 GLU 349 A GLU 411 1_555 P ZN ZN . A ZN 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 B NE2 HIS 326 B HIS 388 1_555 U ZN ZN . B ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 B NE2 HIS 330 B HIS 392 1_555 U ZN ZN . B ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 B OE1 GLU 349 B GLU 411 1_555 U ZN ZN . B ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc7 C NE2 HIS 326 C HIS 388 1_555 Y ZN ZN . C ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc8 C NE2 HIS 330 C HIS 392 1_555 Y ZN ZN . C ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc9 C OE1 GLU 349 C GLU 411 1_555 Y ZN ZN . C ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6ATK _atom_sites.fract_transf_matrix[1][1] 0.006501 _atom_sites.fract_transf_matrix[1][2] 0.003753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 4 NAG A 1 1001 1001 NAG NAG . M 4 NAG A 1 1004 1004 NAG NAG . N 4 NAG A 1 1005 1005 NAG NAG . O 4 NAG A 1 1008 1009 NAG NAG . P 5 ZN A 1 1009 1012 ZN ZN . Q 4 NAG A 1 1010 1013 NAG NAG . R 4 NAG B 1 1003 1005 NAG NAG . S 4 NAG B 1 1004 1006 NAG NAG . T 4 NAG B 1 1007 1009 NAG NAG . U 5 ZN B 1 1008 1012 ZN ZN . V 4 NAG C 1 1001 1002 NAG NAG . W 4 NAG C 1 1002 1005 NAG NAG . X 4 NAG C 1 1005 1009 NAG NAG . Y 5 ZN C 1 1006 1012 ZN ZN . Z 4 NAG C 1 1007 1014 NAG NAG . AA 4 NAG E 1 1001 1001 NAG NAG . BA 4 NAG E 1 1002 1002 NAG NAG . CA 4 NAG D 1 1001 1001 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Z 4 223.272 157.209 -13.432 1 118.92 ? C1 NAG 1007 C 1 HETATM 2 C C2 NAG . . . Z 4 222.685 157.203 -14.85 1 118.92 ? C2 NAG 1007 C 1 HETATM 3 C C3 NAG . . . Z 4 223.76 156.875 -15.886 1 118.92 ? C3 NAG 1007 C 1 HETATM 4 C C4 NAG . . . Z 4 224.977 157.773 -15.707 1 118.92 ? C4 NAG 1007 C 1 HETATM 5 C C5 NAG . . . Z 4 225.472 157.696 -14.268 1 118.92 ? C5 NAG 1007 C 1 HETATM 6 C C6 NAG . . . Z 4 226.621 158.635 -13.982 1 118.92 ? C6 NAG 1007 C 1 HETATM 7 C C7 NAG . . . Z 4 220.335 156.617 -15.268 1 118.92 ? C7 NAG 1007 C 1 HETATM 8 C C8 NAG . . . Z 4 219.329 155.505 -15.332 1 118.92 ? C8 NAG 1007 C 1 HETATM 9 N N2 NAG . . . Z 4 221.584 156.258 -14.951 1 118.92 ? N2 NAG 1007 C 1 HETATM 10 O O3 NAG . . . Z 4 223.205 157.061 -17.184 1 118.92 ? O3 NAG 1007 C 1 HETATM 11 O O4 NAG . . . Z 4 226.02 157.369 -16.589 1 118.92 ? O4 NAG 1007 C 1 HETATM 12 O O5 NAG . . . Z 4 224.41 158.067 -13.381 1 118.92 ? O5 NAG 1007 C 1 HETATM 13 O O6 NAG . . . Z 4 227.76 157.937 -13.497 1 118.92 ? O6 NAG 1007 C 1 HETATM 14 O O7 NAG . . . Z 4 220.03 157.786 -15.494 1 118.92 ? O7 NAG 1007 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #