data_6ATZ # _model_server_result.job_id U6VVSxzBwDAi3Wk3sm7Xvg _model_server_result.datetime_utc '2025-07-20 07:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6atz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 6ATZ # _exptl.entry_id 6ATZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.4 _cell.angle_gamma 90 _cell.entry_id 6ATZ _cell.length_a 66.881 _cell.length_b 72.885 _cell.length_c 95.316 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ATZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,L,M,P 1 1 C,D,F,J,K,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 107 1_555 A SG CYS 160 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 13 B CYS 15 1_555 B SG CYS 77 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 115 B CYS 117 1_555 B SG CYS 171 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 C SG CYS 104 C CYS 107 1_555 C SG CYS 160 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 13 D CYS 15 1_555 D SG CYS 77 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 D SG CYS 115 D CYS 117 1_555 D SG CYS 171 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 75 A ASN 78 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 115 A ASN 118 1_555 H C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 C ND2 ASN 75 C ASN 78 1_555 J C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 C ND2 ASN 115 C ASN 118 1_555 K C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale5 E C ALA 5 E ALA 4 1_555 E N CIR 6 E CIR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 E C CIR 6 E CIR 5 1_555 E N PRO 7 E PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale7 F C ALA 5 F ALA 4 1_555 F N CIR 6 F CIR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 F C CIR 6 F CIR 5 1_555 F N PRO 7 F PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 6ATZ _atom_sites.fract_transf_matrix[1][1] 0.014952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004685 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 201 1 NAG NAG . H 4 NAG A 1 202 3 NAG NAG . I 5 B3P B 1 201 1 B3P B3P . J 4 NAG C 1 201 2 NAG NAG . K 4 NAG C 1 202 4 NAG NAG . L 6 HOH A 1 301 121 HOH HOH . L 6 HOH A 2 302 6 HOH HOH . L 6 HOH A 3 303 102 HOH HOH . L 6 HOH A 4 304 22 HOH HOH . L 6 HOH A 5 305 4 HOH HOH . L 6 HOH A 6 306 49 HOH HOH . L 6 HOH A 7 307 19 HOH HOH . L 6 HOH A 8 308 101 HOH HOH . L 6 HOH A 9 309 52 HOH HOH . L 6 HOH A 10 310 97 HOH HOH . L 6 HOH A 11 311 34 HOH HOH . L 6 HOH A 12 312 48 HOH HOH . L 6 HOH A 13 313 54 HOH HOH . L 6 HOH A 14 314 38 HOH HOH . L 6 HOH A 15 315 109 HOH HOH . L 6 HOH A 16 316 90 HOH HOH . L 6 HOH A 17 317 27 HOH HOH . L 6 HOH A 18 318 13 HOH HOH . L 6 HOH A 19 319 93 HOH HOH . L 6 HOH A 20 320 53 HOH HOH . L 6 HOH A 21 321 95 HOH HOH . L 6 HOH A 22 322 37 HOH HOH . L 6 HOH A 23 323 41 HOH HOH . L 6 HOH A 24 324 96 HOH HOH . L 6 HOH A 25 325 89 HOH HOH . L 6 HOH A 26 326 17 HOH HOH . L 6 HOH A 27 327 63 HOH HOH . L 6 HOH A 28 328 103 HOH HOH . L 6 HOH A 29 329 115 HOH HOH . M 6 HOH B 1 301 50 HOH HOH . M 6 HOH B 2 302 46 HOH HOH . M 6 HOH B 3 303 88 HOH HOH . M 6 HOH B 4 304 29 HOH HOH . M 6 HOH B 5 305 75 HOH HOH . M 6 HOH B 6 306 26 HOH HOH . M 6 HOH B 7 307 25 HOH HOH . M 6 HOH B 8 308 47 HOH HOH . M 6 HOH B 9 309 8 HOH HOH . M 6 HOH B 10 310 30 HOH HOH . M 6 HOH B 11 311 111 HOH HOH . M 6 HOH B 12 312 62 HOH HOH . M 6 HOH B 13 313 116 HOH HOH . M 6 HOH B 14 314 45 HOH HOH . M 6 HOH B 15 315 112 HOH HOH . M 6 HOH B 16 316 74 HOH HOH . M 6 HOH B 17 317 117 HOH HOH . M 6 HOH B 18 318 40 HOH HOH . M 6 HOH B 19 319 76 HOH HOH . M 6 HOH B 20 320 42 HOH HOH . M 6 HOH B 21 321 66 HOH HOH . N 6 HOH C 1 301 72 HOH HOH . N 6 HOH C 2 302 61 HOH HOH . N 6 HOH C 3 303 1 HOH HOH . N 6 HOH C 4 304 39 HOH HOH . N 6 HOH C 5 305 120 HOH HOH . N 6 HOH C 6 306 31 HOH HOH . N 6 HOH C 7 307 65 HOH HOH . N 6 HOH C 8 308 98 HOH HOH . N 6 HOH C 9 309 44 HOH HOH . N 6 HOH C 10 310 15 HOH HOH . N 6 HOH C 11 311 104 HOH HOH . N 6 HOH C 12 312 67 HOH HOH . N 6 HOH C 13 313 35 HOH HOH . N 6 HOH C 14 314 92 HOH HOH . N 6 HOH C 15 315 82 HOH HOH . N 6 HOH C 16 316 9 HOH HOH . N 6 HOH C 17 317 32 HOH HOH . N 6 HOH C 18 318 23 HOH HOH . N 6 HOH C 19 319 87 HOH HOH . N 6 HOH C 20 320 70 HOH HOH . N 6 HOH C 21 321 58 HOH HOH . N 6 HOH C 22 322 60 HOH HOH . N 6 HOH C 23 323 85 HOH HOH . N 6 HOH C 24 324 69 HOH HOH . N 6 HOH C 25 325 68 HOH HOH . N 6 HOH C 26 326 59 HOH HOH . N 6 HOH C 27 327 78 HOH HOH . N 6 HOH C 28 328 18 HOH HOH . N 6 HOH C 29 329 79 HOH HOH . N 6 HOH C 30 330 81 HOH HOH . N 6 HOH C 31 331 56 HOH HOH . N 6 HOH C 32 332 107 HOH HOH . O 6 HOH D 1 201 33 HOH HOH . O 6 HOH D 2 202 20 HOH HOH . O 6 HOH D 3 203 118 HOH HOH . O 6 HOH D 4 204 3 HOH HOH . O 6 HOH D 5 205 21 HOH HOH . O 6 HOH D 6 206 91 HOH HOH . O 6 HOH D 7 207 113 HOH HOH . O 6 HOH D 8 208 80 HOH HOH . O 6 HOH D 9 209 57 HOH HOH . O 6 HOH D 10 210 100 HOH HOH . O 6 HOH D 11 211 11 HOH HOH . O 6 HOH D 12 212 106 HOH HOH . O 6 HOH D 13 213 36 HOH HOH . O 6 HOH D 14 214 2 HOH HOH . O 6 HOH D 15 215 119 HOH HOH . O 6 HOH D 16 216 77 HOH HOH . O 6 HOH D 17 217 12 HOH HOH . O 6 HOH D 18 218 84 HOH HOH . O 6 HOH D 19 219 16 HOH HOH . O 6 HOH D 20 220 14 HOH HOH . O 6 HOH D 21 221 64 HOH HOH . O 6 HOH D 22 222 28 HOH HOH . O 6 HOH D 23 223 10 HOH HOH . O 6 HOH D 24 224 83 HOH HOH . O 6 HOH D 25 225 7 HOH HOH . O 6 HOH D 26 226 86 HOH HOH . O 6 HOH D 27 227 99 HOH HOH . O 6 HOH D 28 228 71 HOH HOH . P 6 HOH E 1 101 73 HOH HOH . Q 6 HOH F 1 101 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . I 5 21.057 -14.333 12.79 1 42.72 ? C1 B3P 201 B 1 HETATM 2 C C2 B3P . . . I 5 20.149 -13.566 13.751 1 43.15 ? C2 B3P 201 B 1 HETATM 3 C C3 B3P . . . I 5 21.368 -15.723 13.345 1 39.61 ? C3 B3P 201 B 1 HETATM 4 N N1 B3P . . . I 5 20.152 -16.523 13.44 1 41.46 ? N1 B3P 201 B 1 HETATM 5 C C4 B3P . . . I 5 20.084 -17.627 12.484 1 44.83 ? C4 B3P 201 B 1 HETATM 6 C C5 B3P . . . I 5 18.787 -18.412 12.704 1 40.41 ? C5 B3P 201 B 1 HETATM 7 C C6 B3P . . . I 5 20.099 -17.083 11.054 1 48.28 ? C6 B3P 201 B 1 HETATM 8 C C7 B3P . . . I 5 21.26 -18.586 12.684 1 45.05 ? C7 B3P 201 B 1 HETATM 9 N N2 B3P . . . I 5 18.757 -13.928 13.52 1 42.67 ? N2 B3P 201 B 1 HETATM 10 C C8 B3P . . . I 5 17.93 -12.819 13.06 1 42.47 ? C8 B3P 201 B 1 HETATM 11 C C9 B3P . . . I 5 17.85 -11.741 14.141 1 37.86 ? C9 B3P 201 B 1 HETATM 12 C C10 B3P . . . I 5 16.506 -13.328 12.828 1 42.44 ? C10 B3P 201 B 1 HETATM 13 C C11 B3P . . . I 5 18.467 -12.256 11.742 1 42.4 ? C11 B3P 201 B 1 HETATM 14 O O1 B3P . . . I 5 18.815 -10.749 13.93 1 41.53 ? O1 B3P 201 B 1 HETATM 15 O O2 B3P . . . I 5 16.492 -14.302 11.819 1 46.17 ? O2 B3P 201 B 1 HETATM 16 O O3 B3P . . . I 5 18.769 -13.313 10.873 1 43.09 ? O3 B3P 201 B 1 HETATM 17 O O4 B3P . . . I 5 17.892 -17.684 13.499 1 38.1 ? O4 B3P 201 B 1 HETATM 18 O O5 B3P . . . I 5 19.06 -16.157 10.886 1 45.85 ? O5 B3P 201 B 1 HETATM 19 O O6 B3P . . . I 5 20.968 -19.834 12.118 1 44.91 ? O6 B3P 201 B 1 HETATM 20 H H11 B3P . . . I 5 21.885 -13.842 12.672 1 51.27 ? H11 B3P 201 B 1 HETATM 21 H H12 B3P . . . I 5 20.612 -14.423 11.933 1 51.27 ? H12 B3P 201 B 1 HETATM 22 H H21 B3P . . . I 5 20.261 -12.613 13.609 1 51.79 ? H21 B3P 201 B 1 HETATM 23 H H22 B3P . . . I 5 20.39 -13.785 14.665 1 51.79 ? H22 B3P 201 B 1 HETATM 24 H H31 B3P . . . I 5 21.762 -15.634 14.227 1 47.55 ? H31 B3P 201 B 1 HETATM 25 H H32 B3P . . . I 5 21.999 -16.167 12.757 1 47.55 ? H32 B3P 201 B 1 HETATM 26 H HN1 B3P . . . I 5 20.071 -16.842 14.267 1 49.76 ? HN1 B3P 201 B 1 HETATM 27 H H51 B3P . . . I 5 18.993 -19.252 13.144 1 48.51 ? H51 B3P 201 B 1 HETATM 28 H H52 B3P . . . I 5 18.374 -18.595 11.846 1 48.51 ? H52 B3P 201 B 1 HETATM 29 H H61 B3P . . . I 5 19.982 -17.815 10.429 1 57.95 ? H61 B3P 201 B 1 HETATM 30 H H62 B3P . . . I 5 20.949 -16.647 10.884 1 57.95 ? H62 B3P 201 B 1 HETATM 31 H H71 B3P . . . I 5 21.427 -18.695 13.633 1 54.08 ? H71 B3P 201 B 1 HETATM 32 H H72 B3P . . . I 5 22.05 -18.218 12.259 1 54.08 ? H72 B3P 201 B 1 HETATM 33 H HN2 B3P . . . I 5 18.411 -14.267 14.266 1 51.22 ? HN2 B3P 201 B 1 HETATM 34 H H91 B3P . . . I 5 17.995 -12.148 15.009 1 45.45 ? H91 B3P 201 B 1 HETATM 35 H H92 B3P . . . I 5 16.968 -11.336 14.122 1 45.45 ? H92 B3P 201 B 1 HETATM 36 H H101 B3P . . . I 5 15.94 -12.586 12.565 1 50.94 ? H101 B3P 201 B 1 HETATM 37 H H102 B3P . . . I 5 16.167 -13.714 13.65 1 50.94 ? H102 B3P 201 B 1 HETATM 38 H H111 B3P . . . I 5 19.27 -11.739 11.914 1 50.9 ? H111 B3P 201 B 1 HETATM 39 H H112 B3P . . . I 5 17.796 -11.685 11.336 1 50.9 ? H112 B3P 201 B 1 HETATM 40 H HO1 B3P . . . I 5 18.629 -10.068 14.402 1 49.85 ? HO1 B3P 201 B 1 HETATM 41 H HO2 B3P . . . I 5 17.243 -14.699 11.797 1 55.42 ? HO2 B3P 201 B 1 HETATM 42 H HO3 B3P . . . I 5 18.088 -13.492 10.396 1 51.72 ? HO3 B3P 201 B 1 HETATM 43 H HO4 B3P . . . I 5 17.357 -18.219 13.886 1 45.73 ? HO4 B3P 201 B 1 HETATM 44 H HO5 B3P . . . I 5 18.859 -16.102 10.062 1 55.04 ? HO5 B3P 201 B 1 HETATM 45 H HO6 B3P . . . I 5 21.367 -20.444 12.556 1 53.91 ? HO6 B3P 201 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 458 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #