data_6ATZ
#
_model_server_result.job_id            5lJYFw7DERLtllq3PqJveA 
_model_server_result.datetime_utc      '2024-11-16 16:40:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6atz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    6ATZ 
#
_exptl.entry_id    6ATZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.4 
_cell.angle_gamma         90 
_cell.entry_id            6ATZ 
_cell.length_a            66.881 
_cell.length_b            72.885 
_cell.length_c            95.316 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ATZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,L,M,P 1 1 
C,D,F,J,K,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 104 A CYS 107 1_555 A SG CYS 160 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 13 B CYS 15 1_555 B SG CYS 77 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 115 B CYS 117 1_555 B SG CYS 171 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 C SG CYS 104 C CYS 107 1_555 C SG CYS 160 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 D SG CYS 13 D CYS 15 1_555 D SG CYS 77 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 D SG CYS 115 D CYS 117 1_555 D SG CYS 171 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 75 A ASN 78 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 115 A ASN 118 1_555 H C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 C ND2 ASN 75 C ASN 78 1_555 J C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 C ND2 ASN 115 C ASN 118 1_555 K C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale5 E C ALA 5 E ALA 4 1_555 E N CIR 6 E CIR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale6 E C CIR 6 E CIR 5 1_555 E N PRO 7 E PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale7 F C ALA 5 F ALA 4 1_555 F N CIR 6 F CIR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 F C CIR 6 F CIR 5 1_555 F N PRO 7 F PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 305 n n 
C1 O1 NAG sing 306 n n 
C1 O5 NAG sing 307 n n 
C1 H1 NAG sing 308 n n 
C2 C3 NAG sing 309 n n 
C2 N2 NAG sing 310 n n 
C2 H2 NAG sing 311 n n 
C3 C4 NAG sing 312 n n 
C3 O3 NAG sing 313 n n 
C3 H3 NAG sing 314 n n 
C4 C5 NAG sing 315 n n 
C4 O4 NAG sing 316 n n 
C4 H4 NAG sing 317 n n 
C5 C6 NAG sing 318 n n 
C5 O5 NAG sing 319 n n 
C5 H5 NAG sing 320 n n 
C6 O6 NAG sing 321 n n 
C6 H61 NAG sing 322 n n 
C6 H62 NAG sing 323 n n 
C7 C8 NAG sing 324 n n 
C7 N2 NAG sing 325 n n 
C7 O7 NAG doub 326 n n 
C8 H81 NAG sing 327 n n 
C8 H82 NAG sing 328 n n 
C8 H83 NAG sing 329 n n 
N2 HN2 NAG sing 330 n n 
O1 HO1 NAG sing 331 n n 
O3 HO3 NAG sing 332 n n 
O4 HO4 NAG sing 333 n n 
O6 HO6 NAG sing 334 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6ATZ 
_atom_sites.fract_transf_matrix[1][1]    0.014952 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004685 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010994 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 201 1 NAG NAG . 
H 4 NAG A 1 202 3 NAG NAG . 
I 5 B3P B 1 201 1 B3P B3P . 
J 4 NAG C 1 201 2 NAG NAG . 
K 4 NAG C 1 202 4 NAG NAG . 
L 6 HOH A 1 301 121 HOH HOH . 
L 6 HOH A 2 302 6 HOH HOH . 
L 6 HOH A 3 303 102 HOH HOH . 
L 6 HOH A 4 304 22 HOH HOH . 
L 6 HOH A 5 305 4 HOH HOH . 
L 6 HOH A 6 306 49 HOH HOH . 
L 6 HOH A 7 307 19 HOH HOH . 
L 6 HOH A 8 308 101 HOH HOH . 
L 6 HOH A 9 309 52 HOH HOH . 
L 6 HOH A 10 310 97 HOH HOH . 
L 6 HOH A 11 311 34 HOH HOH . 
L 6 HOH A 12 312 48 HOH HOH . 
L 6 HOH A 13 313 54 HOH HOH . 
L 6 HOH A 14 314 38 HOH HOH . 
L 6 HOH A 15 315 109 HOH HOH . 
L 6 HOH A 16 316 90 HOH HOH . 
L 6 HOH A 17 317 27 HOH HOH . 
L 6 HOH A 18 318 13 HOH HOH . 
L 6 HOH A 19 319 93 HOH HOH . 
L 6 HOH A 20 320 53 HOH HOH . 
L 6 HOH A 21 321 95 HOH HOH . 
L 6 HOH A 22 322 37 HOH HOH . 
L 6 HOH A 23 323 41 HOH HOH . 
L 6 HOH A 24 324 96 HOH HOH . 
L 6 HOH A 25 325 89 HOH HOH . 
L 6 HOH A 26 326 17 HOH HOH . 
L 6 HOH A 27 327 63 HOH HOH . 
L 6 HOH A 28 328 103 HOH HOH . 
L 6 HOH A 29 329 115 HOH HOH . 
M 6 HOH B 1 301 50 HOH HOH . 
M 6 HOH B 2 302 46 HOH HOH . 
M 6 HOH B 3 303 88 HOH HOH . 
M 6 HOH B 4 304 29 HOH HOH . 
M 6 HOH B 5 305 75 HOH HOH . 
M 6 HOH B 6 306 26 HOH HOH . 
M 6 HOH B 7 307 25 HOH HOH . 
M 6 HOH B 8 308 47 HOH HOH . 
M 6 HOH B 9 309 8 HOH HOH . 
M 6 HOH B 10 310 30 HOH HOH . 
M 6 HOH B 11 311 111 HOH HOH . 
M 6 HOH B 12 312 62 HOH HOH . 
M 6 HOH B 13 313 116 HOH HOH . 
M 6 HOH B 14 314 45 HOH HOH . 
M 6 HOH B 15 315 112 HOH HOH . 
M 6 HOH B 16 316 74 HOH HOH . 
M 6 HOH B 17 317 117 HOH HOH . 
M 6 HOH B 18 318 40 HOH HOH . 
M 6 HOH B 19 319 76 HOH HOH . 
M 6 HOH B 20 320 42 HOH HOH . 
M 6 HOH B 21 321 66 HOH HOH . 
N 6 HOH C 1 301 72 HOH HOH . 
N 6 HOH C 2 302 61 HOH HOH . 
N 6 HOH C 3 303 1 HOH HOH . 
N 6 HOH C 4 304 39 HOH HOH . 
N 6 HOH C 5 305 120 HOH HOH . 
N 6 HOH C 6 306 31 HOH HOH . 
N 6 HOH C 7 307 65 HOH HOH . 
N 6 HOH C 8 308 98 HOH HOH . 
N 6 HOH C 9 309 44 HOH HOH . 
N 6 HOH C 10 310 15 HOH HOH . 
N 6 HOH C 11 311 104 HOH HOH . 
N 6 HOH C 12 312 67 HOH HOH . 
N 6 HOH C 13 313 35 HOH HOH . 
N 6 HOH C 14 314 92 HOH HOH . 
N 6 HOH C 15 315 82 HOH HOH . 
N 6 HOH C 16 316 9 HOH HOH . 
N 6 HOH C 17 317 32 HOH HOH . 
N 6 HOH C 18 318 23 HOH HOH . 
N 6 HOH C 19 319 87 HOH HOH . 
N 6 HOH C 20 320 70 HOH HOH . 
N 6 HOH C 21 321 58 HOH HOH . 
N 6 HOH C 22 322 60 HOH HOH . 
N 6 HOH C 23 323 85 HOH HOH . 
N 6 HOH C 24 324 69 HOH HOH . 
N 6 HOH C 25 325 68 HOH HOH . 
N 6 HOH C 26 326 59 HOH HOH . 
N 6 HOH C 27 327 78 HOH HOH . 
N 6 HOH C 28 328 18 HOH HOH . 
N 6 HOH C 29 329 79 HOH HOH . 
N 6 HOH C 30 330 81 HOH HOH . 
N 6 HOH C 31 331 56 HOH HOH . 
N 6 HOH C 32 332 107 HOH HOH . 
O 6 HOH D 1 201 33 HOH HOH . 
O 6 HOH D 2 202 20 HOH HOH . 
O 6 HOH D 3 203 118 HOH HOH . 
O 6 HOH D 4 204 3 HOH HOH . 
O 6 HOH D 5 205 21 HOH HOH . 
O 6 HOH D 6 206 91 HOH HOH . 
O 6 HOH D 7 207 113 HOH HOH . 
O 6 HOH D 8 208 80 HOH HOH . 
O 6 HOH D 9 209 57 HOH HOH . 
O 6 HOH D 10 210 100 HOH HOH . 
O 6 HOH D 11 211 11 HOH HOH . 
O 6 HOH D 12 212 106 HOH HOH . 
O 6 HOH D 13 213 36 HOH HOH . 
O 6 HOH D 14 214 2 HOH HOH . 
O 6 HOH D 15 215 119 HOH HOH . 
O 6 HOH D 16 216 77 HOH HOH . 
O 6 HOH D 17 217 12 HOH HOH . 
O 6 HOH D 18 218 84 HOH HOH . 
O 6 HOH D 19 219 16 HOH HOH . 
O 6 HOH D 20 220 14 HOH HOH . 
O 6 HOH D 21 221 64 HOH HOH . 
O 6 HOH D 22 222 28 HOH HOH . 
O 6 HOH D 23 223 10 HOH HOH . 
O 6 HOH D 24 224 83 HOH HOH . 
O 6 HOH D 25 225 7 HOH HOH . 
O 6 HOH D 26 226 86 HOH HOH . 
O 6 HOH D 27 227 99 HOH HOH . 
O 6 HOH D 28 228 71 HOH HOH . 
P 6 HOH E 1 101 73 HOH HOH . 
Q 6 HOH F 1 101 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 4 19.119 -19.701 48.889 1 58.5 ? C1 NAG 201 C 1 
HETATM 2 C C2 NAG . . . J 4 18.738 -18.292 48.482 1 60.58 ? C2 NAG 201 C 1 
HETATM 3 C C3 NAG . . . J 4 19.99 -17.526 48.264 1 63.35 ? C3 NAG 201 C 1 
HETATM 4 C C4 NAG . . . J 4 20.738 -17.395 49.559 1 64.3 ? C4 NAG 201 C 1 
HETATM 5 C C5 NAG . . . J 4 20.95 -18.739 50.277 1 63.52 ? C5 NAG 201 C 1 
HETATM 6 C C6 NAG . . . J 4 21.248 -18.482 51.726 1 65.44 ? C6 NAG 201 C 1 
HETATM 7 C C7 NAG . . . J 4 18.101 -18.352 45.893 1 57.1 ? C7 NAG 201 C 1 
HETATM 8 C C8 NAG . . . J 4 19.522 -18.23 45.328 1 56.77 ? C8 NAG 201 C 1 
HETATM 9 N N2 NAG . . . J 4 17.77 -18.37 47.324 1 56.68 ? N2 NAG 201 C 1 
HETATM 10 O O3 NAG . . . J 4 19.681 -16.204 47.743 1 65.22 ? O3 NAG 201 C 1 
HETATM 11 O O4 NAG . . . J 4 22.022 -16.828 49.287 1 64.34 ? O4 NAG 201 C 1 
HETATM 12 O O5 NAG . . . J 4 19.8 -19.662 50.227 1 62.5 ? O5 NAG 201 C 1 
HETATM 13 O O6 NAG . . . J 4 20.233 -17.693 52.292 1 71.64 ? O6 NAG 201 C 1 
HETATM 14 O O7 NAG . . . J 4 17.205 -18.432 45.122 1 57.22 ? O7 NAG 201 C 1 
HETATM 15 H H2 NAG . . . J 4 18.274 -17.885 49.23 1 72.71 ? H2 NAG 201 C 1 
HETATM 16 H H3 NAG . . . J 4 20.544 -18.002 47.626 1 76.04 ? H3 NAG 201 C 1 
HETATM 17 H H4 NAG . . . J 4 20.244 -16.801 50.147 1 77.18 ? H4 NAG 201 C 1 
HETATM 18 H H5 NAG . . . J 4 21.714 -19.182 49.875 1 76.24 ? H5 NAG 201 C 1 
HETATM 19 H H61 NAG . . . J 4 22.097 -18.018 51.803 1 78.54 ? H61 NAG 201 C 1 
HETATM 20 H H62 NAG . . . J 4 21.3 -19.327 52.199 1 78.54 ? H62 NAG 201 C 1 
HETATM 21 H H81 NAG . . . J 4 19.487 -18.245 44.359 1 68.14 ? H81 NAG 201 C 1 
HETATM 22 H H82 NAG . . . J 4 20.06 -18.972 45.644 1 68.14 ? H82 NAG 201 C 1 
HETATM 23 H H83 NAG . . . J 4 19.917 -17.395 45.624 1 68.14 ? H83 NAG 201 C 1 
HETATM 24 H HN2 NAG . . . J 4 16.937 -18.446 47.524 1 68.03 ? HN2 NAG 201 C 1 
HETATM 25 H HO3 NAG . . . J 4 20.402 -15.769 47.629 1 78.28 ? HO3 NAG 201 C 1 
HETATM 26 H HO4 NAG . . . J 4 21.941 -16.203 48.717 1 77.22 ? HO4 NAG 201 C 1 
HETATM 27 H HO6 NAG . . . J 4 20.545 -17.261 52.954 1 85.99 ? HO6 NAG 201 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#