data_6AUG
#
_model_server_result.job_id            fa9uHkI9z7fk8tj1AnPQRw 
_model_server_result.datetime_utc      '2024-11-27 17:17:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6aug 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    6AUG 
#
_exptl.entry_id    6AUG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              158.238 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.34 
_cell.angle_gamma         90 
_cell.entry_id            6AUG 
_cell.length_a            92.61 
_cell.length_b            62.08 
_cell.length_c            118.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AUG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
'gel filtration' monomeric 1 author_defined_assembly 1 
'gel filtration' monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
A,C,D,F 3 1 
B,E,G 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.305 31.04 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             84 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              285 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C02 
_struct_conn.ptnr2_label_comp_id            BXG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             BXG 
_struct_conn.ptnr2_auth_seq_id              501 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.98 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C9 H18 O2' 
_chem_comp.formula_weight    158.238 
_chem_comp.id                KNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'nonanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C1 KNA doub 212 n n 
C1 C2 KNA sing 213 n n 
C1 O1 KNA sing 214 n n 
O1 HO1 KNA sing 215 n n 
C3 C2 KNA sing 216 n n 
C2 H2 KNA sing 217 n n 
C2 H2A KNA sing 218 n n 
C3 C4 KNA sing 219 n n 
C3 H3 KNA sing 220 n n 
C3 H3A KNA sing 221 n n 
C5 C4 KNA sing 222 n n 
C4 H4 KNA sing 223 n n 
C4 H4A KNA sing 224 n n 
C5 C6 KNA sing 225 n n 
C5 H5 KNA sing 226 n n 
C5 H5A KNA sing 227 n n 
C6 C7 KNA sing 228 n n 
C6 H6 KNA sing 229 n n 
C6 H6A KNA sing 230 n n 
C7 C8 KNA sing 231 n n 
C7 H7 KNA sing 232 n n 
C7 H7A KNA sing 233 n n 
C8 C9 KNA sing 234 n n 
C8 H8 KNA sing 235 n n 
C8 H8A KNA sing 236 n n 
C9 H9 KNA sing 237 n n 
C9 H9A KNA sing 238 n n 
C9 H9B KNA sing 239 n n 
#
_atom_sites.entry_id                     6AUG 
_atom_sites.fract_transf_matrix[1][1]    0.010798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002362 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BXG A 1 501 501 BXG LIG . 
D 3 KNA A 1 502 503 KNA KNA . 
E 2 BXG B 1 501 501 BXG LIG . 
F 4 HOH A 1 601 32 HOH HOH . 
F 4 HOH A 2 602 20 HOH HOH . 
F 4 HOH A 3 603 33 HOH HOH . 
F 4 HOH A 4 604 14 HOH HOH . 
F 4 HOH A 5 605 46 HOH HOH . 
F 4 HOH A 6 606 23 HOH HOH . 
F 4 HOH A 7 607 5 HOH HOH . 
F 4 HOH A 8 608 24 HOH HOH . 
F 4 HOH A 9 609 29 HOH HOH . 
F 4 HOH A 10 610 19 HOH HOH . 
F 4 HOH A 11 611 4 HOH HOH . 
F 4 HOH A 12 612 38 HOH HOH . 
F 4 HOH A 13 613 16 HOH HOH . 
F 4 HOH A 14 614 22 HOH HOH . 
F 4 HOH A 15 615 43 HOH HOH . 
F 4 HOH A 16 616 51 HOH HOH . 
F 4 HOH A 17 617 1 HOH HOH . 
F 4 HOH A 18 618 30 HOH HOH . 
F 4 HOH A 19 619 47 HOH HOH . 
F 4 HOH A 20 620 26 HOH HOH . 
F 4 HOH A 21 621 18 HOH HOH . 
F 4 HOH A 22 622 13 HOH HOH . 
F 4 HOH A 23 623 58 HOH HOH . 
F 4 HOH A 24 624 17 HOH HOH . 
F 4 HOH A 25 625 39 HOH HOH . 
F 4 HOH A 26 626 31 HOH HOH . 
F 4 HOH A 27 627 6 HOH HOH . 
F 4 HOH A 28 628 40 HOH HOH . 
F 4 HOH A 29 629 34 HOH HOH . 
F 4 HOH A 30 630 53 HOH HOH . 
F 4 HOH A 31 631 60 HOH HOH . 
F 4 HOH A 32 632 41 HOH HOH . 
F 4 HOH A 33 633 56 HOH HOH . 
G 4 HOH B 1 601 3 HOH HOH . 
G 4 HOH B 2 602 55 HOH HOH . 
G 4 HOH B 3 603 21 HOH HOH . 
G 4 HOH B 4 604 36 HOH HOH . 
G 4 HOH B 5 605 45 HOH HOH . 
G 4 HOH B 6 606 57 HOH HOH . 
G 4 HOH B 7 607 35 HOH HOH . 
G 4 HOH B 8 608 2 HOH HOH . 
G 4 HOH B 9 609 9 HOH HOH . 
G 4 HOH B 10 610 7 HOH HOH . 
G 4 HOH B 11 611 10 HOH HOH . 
G 4 HOH B 12 612 12 HOH HOH . 
G 4 HOH B 13 613 54 HOH HOH . 
G 4 HOH B 14 614 11 HOH HOH . 
G 4 HOH B 15 615 8 HOH HOH . 
G 4 HOH B 16 616 25 HOH HOH . 
G 4 HOH B 17 617 28 HOH HOH . 
G 4 HOH B 18 618 48 HOH HOH . 
G 4 HOH B 19 619 50 HOH HOH . 
G 4 HOH B 20 620 49 HOH HOH . 
G 4 HOH B 21 621 52 HOH HOH . 
G 4 HOH B 22 622 27 HOH HOH . 
G 4 HOH B 23 623 42 HOH HOH . 
G 4 HOH B 24 624 15 HOH HOH . 
G 4 HOH B 25 625 44 HOH HOH . 
G 4 HOH B 26 626 37 HOH HOH . 
G 4 HOH B 27 627 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KNA . . . D 3 -30.043 37.022 8.334 1 41.3 ? C1 KNA 502 A 1 
HETATM 2 O O1 KNA . . . D 3 -29.091 36.333 8.802 1 33.28 ? O1 KNA 502 A 1 
HETATM 3 C C2 KNA . . . D 3 -31.485 36.551 8.518 1 37.01 ? C2 KNA 502 A 1 
HETATM 4 O O2 KNA . . . D 3 -29.819 38.094 7.708 1 41.43 ? O2 KNA 502 A 1 
HETATM 5 C C3 KNA . . . D 3 -31.467 35.061 8.851 1 31.35 ? C3 KNA 502 A 1 
HETATM 6 C C4 KNA . . . D 3 -32.68 34.825 9.726 1 42.83 ? C4 KNA 502 A 1 
HETATM 7 C C5 KNA . . . D 3 -33.538 33.61 9.355 1 41.27 ? C5 KNA 502 A 1 
HETATM 8 C C6 KNA . . . D 3 -35.022 33.986 9.531 1 44.95 ? C6 KNA 502 A 1 
HETATM 9 C C7 KNA . . . D 3 -35.183 35.276 10.363 1 43.64 ? C7 KNA 502 A 1 
HETATM 10 C C8 KNA . . . D 3 -35.718 36.463 9.561 1 47.77 ? C8 KNA 502 A 1 
HETATM 11 C C9 KNA . . . D 3 -34.825 37.679 9.809 1 43.23 ? C9 KNA 502 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           11 
#