data_6AUO # _model_server_result.job_id xU9QT3IW1kEA0UXL4Fjzwg _model_server_result.datetime_utc '2024-12-01 02:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6auo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6AUO # _exptl.entry_id 6AUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 916.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-biotin-C-Co4(mu3-O)4(Py)3(H2O)4-beta-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AUO _cell.length_a 57.555 _cell.length_b 57.555 _cell.length_c 183.719 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H36 Co4 N6 O12 S' _chem_comp.formula_weight 916.416 _chem_comp.id OL4 _chem_comp.mon_nstd_flag . _chem_comp.name N-biotin-C-Co4(mu3-O)4(Py)3(H2O)4-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 C13 OL4 doub 224 n n C13 N03 OL4 sing 225 n n C13 N02 OL4 sing 226 n n N03 C11 OL4 sing 227 n n C11 C10 OL4 sing 228 n n C11 C12 OL4 sing 229 n n C10 S01 OL4 sing 230 n n S01 C09 OL4 sing 231 n n N02 C12 OL4 sing 232 n n C12 C09 OL4 sing 233 n n C09 C08 OL4 sing 234 n n C08 C07 OL4 sing 235 n n C07 C06 OL4 sing 236 n n C06 C05 OL4 sing 237 n n C05 C01 OL4 sing 238 n n C01 O01 OL4 doub 239 n n C01 N01 OL4 sing 240 n n N01 C02 OL4 sing 241 n n C02 C37 OL4 sing 242 n n C37 C04 OL4 sing 243 n n C04 O14 OL4 sing 244 n n C04 O03 OL4 sing 245 n n O14 CO2 OL4 sing 246 n n O03 CO4 OL4 sing 247 n n CO4 O05 OL4 sing 248 n n CO4 O07 OL4 sing 249 n n CO4 O12 OL4 sing 250 n n CO4 O15 OL4 sing 251 n n O05 CO1 OL4 sing 252 n n O05 CO2 OL4 sing 253 n n O07 CO1 OL4 sing 254 n n O07 CO3 OL4 sing 255 n n CO1 O10 OL4 sing 256 n n CO1 O06 OL4 sing 257 n n N04 C22 OL4 doub 258 n y N04 C18 OL4 sing 259 n y C22 C21 OL4 sing 260 n y C21 C20 OL4 doub 261 n y C20 C19 OL4 sing 262 n y C19 C18 OL4 doub 263 n y O12 CO3 OL4 sing 264 n n O12 CO2 OL4 sing 265 n n CO3 N06 OL4 sing 266 n n CO3 O16 OL4 sing 267 n n CO3 O06 OL4 sing 268 n n N06 C34 OL4 doub 269 n y N06 C28 OL4 sing 270 n y C34 C35 OL4 sing 271 n y C35 C30 OL4 doub 272 n y C30 C29 OL4 sing 273 n y C29 C28 OL4 doub 274 n y O06 CO2 OL4 sing 275 n n CO2 O09 OL4 sing 276 n n CO2 N05 OL4 sing 277 n n N05 C32 OL4 doub 278 n y N05 C24 OL4 sing 279 n y C32 C33 OL4 sing 280 n y C33 C26 OL4 doub 281 n y C26 C25 OL4 sing 282 n y C25 C24 OL4 doub 283 n y CO1 N04 OL4 sing 284 n n N03 H1 OL4 sing 285 n n C11 H2 OL4 sing 286 n n C10 H3 OL4 sing 287 n n C10 H4 OL4 sing 288 n n N02 H5 OL4 sing 289 n n C12 H6 OL4 sing 290 n n C09 H7 OL4 sing 291 n n C08 H8 OL4 sing 292 n n C08 H9 OL4 sing 293 n n C07 H10 OL4 sing 294 n n C07 H11 OL4 sing 295 n n C06 H12 OL4 sing 296 n n C06 H13 OL4 sing 297 n n C05 H14 OL4 sing 298 n n C05 H15 OL4 sing 299 n n N01 H16 OL4 sing 300 n n C02 H17 OL4 sing 301 n n C02 H18 OL4 sing 302 n n C37 H19 OL4 sing 303 n n C37 H20 OL4 sing 304 n n C04 H21 OL4 sing 305 n n C22 H22 OL4 sing 306 n n C21 H23 OL4 sing 307 n n C20 H24 OL4 sing 308 n n C19 H25 OL4 sing 309 n n C18 H26 OL4 sing 310 n n C34 H27 OL4 sing 311 n n C35 H28 OL4 sing 312 n n C30 H29 OL4 sing 313 n n C29 H30 OL4 sing 314 n n C28 H31 OL4 sing 315 n n C32 H36 OL4 sing 316 n n C33 H37 OL4 sing 317 n n C26 H38 OL4 sing 318 n n C25 H39 OL4 sing 319 n n C24 H40 OL4 sing 320 n n # _atom_sites.entry_id 6AUO _atom_sites.fract_transf_matrix[1][1] 0.017375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OL4 A 1 201 1 OL4 OL4 . C 3 HOH A 1 301 38 HOH HOH . C 3 HOH A 2 302 8 HOH HOH . C 3 HOH A 3 303 39 HOH HOH . C 3 HOH A 4 304 13 HOH HOH . C 3 HOH A 5 305 2 HOH HOH . C 3 HOH A 6 306 23 HOH HOH . C 3 HOH A 7 307 5 HOH HOH . C 3 HOH A 8 308 17 HOH HOH . C 3 HOH A 9 309 22 HOH HOH . C 3 HOH A 10 310 21 HOH HOH . C 3 HOH A 11 311 6 HOH HOH . C 3 HOH A 12 312 27 HOH HOH . C 3 HOH A 13 313 7 HOH HOH . C 3 HOH A 14 314 11 HOH HOH . C 3 HOH A 15 315 20 HOH HOH . C 3 HOH A 16 316 44 HOH HOH . C 3 HOH A 17 317 4 HOH HOH . C 3 HOH A 18 318 14 HOH HOH . C 3 HOH A 19 319 10 HOH HOH . C 3 HOH A 20 320 29 HOH HOH . C 3 HOH A 21 321 15 HOH HOH . C 3 HOH A 22 322 19 HOH HOH . C 3 HOH A 23 323 1 HOH HOH . C 3 HOH A 24 324 32 HOH HOH . C 3 HOH A 25 325 9 HOH HOH . C 3 HOH A 26 326 30 HOH HOH . C 3 HOH A 27 327 16 HOH HOH . C 3 HOH A 28 328 45 HOH HOH . C 3 HOH A 29 329 12 HOH HOH . C 3 HOH A 30 330 31 HOH HOH . C 3 HOH A 31 331 26 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 25 HOH HOH . C 3 HOH A 34 334 43 HOH HOH . C 3 HOH A 35 335 28 HOH HOH . C 3 HOH A 36 336 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O04 OL4 . . . B 2 -14.519 0.563 -8.137 1 11.29 ? O04 OL4 201 A 1 HETATM 2 C C13 OL4 . . . B 2 -13.299 0.474 -8.44 1 11.06 ? C13 OL4 201 A 1 HETATM 3 N N03 OL4 . . . B 2 -12.399 0.579 -7.48 1 12.8 ? N03 OL4 201 A 1 HETATM 4 C C11 OL4 . . . B 2 -11.077 0.542 -8.117 1 10.57 ? C11 OL4 201 A 1 HETATM 5 C C10 OL4 . . . B 2 -10.274 -0.655 -7.58 1 11.46 ? C10 OL4 201 A 1 HETATM 6 S S01 OL4 . . . B 2 -10.885 -2.058 -8.56 1 13.17 ? S01 OL4 201 A 1 HETATM 7 N N02 OL4 . . . B 2 -12.851 0.226 -9.661 1 10.42 ? N02 OL4 201 A 1 HETATM 8 C C12 OL4 . . . B 2 -11.408 0.292 -9.639 1 10 ? C12 OL4 201 A 1 HETATM 9 C C09 OL4 . . . B 2 -10.787 -1.018 -10.025 1 11.81 ? C09 OL4 201 A 1 HETATM 10 C C08 OL4 . . . B 2 -11.325 -1.711 -11.251 1 12.02 ? C08 OL4 201 A 1 HETATM 11 C C07 OL4 . . . B 2 -10.534 -2.853 -11.9 1 12.28 ? C07 OL4 201 A 1 HETATM 12 C C06 OL4 . . . B 2 -11.225 -3.463 -13.16 1 13.78 ? C06 OL4 201 A 1 HETATM 13 C C05 OL4 . . . B 2 -10.385 -4.618 -13.667 1 12.53 ? C05 OL4 201 A 1 HETATM 14 C C01 OL4 . . . B 2 -9.121 -4.065 -14.272 1 14.92 ? C01 OL4 201 A 1 HETATM 15 O O01 OL4 . . . B 2 -9.081 -2.969 -14.917 1 16.28 ? O01 OL4 201 A 1 HETATM 16 N N01 OL4 . . . B 2 -8.075 -4.771 -14.073 1 15.23 ? N01 OL4 201 A 1 HETATM 17 C C02 OL4 . . . B 2 -6.805 -4.335 -14.57 1 21.75 ? C02 OL4 201 A 1 HETATM 18 C C37 OL4 . . . B 2 -6.625 -4.926 -15.939 1 28.96 ? C37 OL4 201 A 1 HETATM 19 C C04 OL4 . . . B 2 -5.514 -4.198 -16.671 1 43.37 ? C04 OL4 201 A 1 HETATM 20 O O14 OL4 . . . B 2 -5.401 -4.495 -17.937 1 46.16 ? O14 OL4 201 A 1 HETATM 21 O O03 OL4 . . . B 2 -4.741 -3.297 -16.046 1 48.54 ? O03 OL4 201 A 1 HETATM 22 CO CO4 OL4 . . . B 2 -3.219 -2.249 -16.934 1 55.69 ? CO4 OL4 201 A 1 HETATM 23 O O05 OL4 . . . B 2 -2.399 -3.835 -17.749 1 53.33 ? O05 OL4 201 A 1 HETATM 24 O O07 OL4 . . . B 2 -1.75 -1.266 -17.949 1 50.79 ? O07 OL4 201 A 1 HETATM 25 CO CO1 OL4 . . . B 2 -1.078 -2.861 -18.79 1 62.96 ? CO1 OL4 201 A 1 HETATM 26 O O12 OL4 . . . B 2 -4.38 -1.858 -18.417 1 33.74 ? O12 OL4 201 A 1 HETATM 27 CO CO3 OL4 . . . B 2 -2.979 -0.756 -19.412 1 67.73 ? CO3 OL4 201 A 1 HETATM 28 N N06 OL4 . . . B 2 -4.126 -0.381 -20.547 1 68.43 ? N06 OL4 201 A 1 HETATM 29 C C34 OL4 . . . B 2 -3.983 -0.937 -21.795 1 69.11 ? C34 OL4 201 A 1 HETATM 30 C C35 OL4 . . . B 2 -4.864 -0.682 -22.711 1 79.7 ? C35 OL4 201 A 1 HETATM 31 C C30 OL4 . . . B 2 -5.893 0.09 -22.445 1 81.72 ? C30 OL4 201 A 1 HETATM 32 C C29 OL4 . . . B 2 -6.092 0.681 -21.167 1 81.38 ? C29 OL4 201 A 1 HETATM 33 C C28 OL4 . . . B 2 -5.151 0.427 -20.165 1 60.33 ? C28 OL4 201 A 1 HETATM 34 O O10 OL4 . . . B 2 -0.03 -1.568 -20.27 1 53.35 ? O10 OL4 201 A 1 HETATM 35 O O15 OL4 . . . B 2 -4.106 -0.508 -16.125 1 47.11 ? O15 OL4 201 A 1 HETATM 36 O O06 OL4 . . . B 2 -2.461 -2.496 -20.112 1 55.93 ? O06 OL4 201 A 1 HETATM 37 CO CO2 OL4 . . . B 2 -3.904 -3.528 -19.077 1 51.58 ? CO2 OL4 201 A 1 HETATM 38 O O09 OL4 . . . B 2 -3.418 -5.418 -19.886 1 51.71 ? O09 OL4 201 A 1 HETATM 39 N N05 OL4 . . . B 2 -5.6 -3.355 -20.283 1 52.74 ? N05 OL4 201 A 1 HETATM 40 C C32 OL4 . . . B 2 -6.626 -2.598 -19.837 1 42.95 ? C32 OL4 201 A 1 HETATM 41 C C33 OL4 . . . B 2 -7.804 -2.454 -20.617 1 56.52 ? C33 OL4 201 A 1 HETATM 42 C C26 OL4 . . . B 2 -7.914 -3.124 -21.852 1 59.24 ? C26 OL4 201 A 1 HETATM 43 C C25 OL4 . . . B 2 -6.815 -3.911 -22.283 1 65.02 ? C25 OL4 201 A 1 HETATM 44 C C24 OL4 . . . B 2 -5.656 -4.023 -21.471 1 59.46 ? C24 OL4 201 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 495 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #