data_6AV1 # _model_server_result.job_id D3as1CapP4whDwY8CcXjeA _model_server_result.datetime_utc '2025-01-10 11:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6av1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 6AV1 # _exptl.entry_id 6AV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 315.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2-{3-[3-(dimethylamino)propyl]-5-fluorophenyl}ethyl)-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AV1 _cell.length_a 52.46 _cell.length_b 121.22 _cell.length_c 164.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 331 1_555 F ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A SG CYS 35 A CYS 336 1_555 F ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 A SG CYS 119 A CYS 420 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 F ZN ZN . A ZN 804 1_555 B SG CYS 30 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 F ZN ZN . A ZN 804 1_555 B SG CYS 35 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc6 B SG CYS 119 B CYS 420 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'C19 H26 F N3' _chem_comp.formula_weight 315.428 _chem_comp.id W69 _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2-{3-[3-(dimethylamino)propyl]-5-fluorophenyl}ethyl)-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 N20 W69 sing 491 n n C21 N20 W69 sing 492 n n N20 C19 W69 sing 493 n n C19 C18 W69 sing 494 n n C18 C17 W69 sing 495 n n C17 C15 W69 sing 496 n n C15 C16 W69 doub 497 n y C15 C14 W69 sing 498 n y C16 C11 W69 sing 499 n y C08 C06 W69 sing 500 n n C08 C09 W69 sing 501 n n C14 C13 W69 doub 502 n y N01 C06 W69 doub 503 n y N01 C02 W69 sing 504 n y N02 C02 W69 sing 505 n n C06 C05 W69 sing 506 n y C02 C03 W69 doub 507 n y C11 C09 W69 sing 508 n n C11 C12 W69 doub 509 n y C13 C12 W69 sing 510 n y C13 F13 W69 sing 511 n n C05 C04 W69 doub 512 n y C03 C04 W69 sing 513 n y C04 C07 W69 sing 514 n n C12 H1 W69 sing 515 n n C14 H2 W69 sing 516 n n C17 H3 W69 sing 517 n n C17 H4 W69 sing 518 n n C18 H5 W69 sing 519 n n C18 H6 W69 sing 520 n n C19 H7 W69 sing 521 n n C19 H8 W69 sing 522 n n C21 H10 W69 sing 523 n n C21 H11 W69 sing 524 n n C21 H12 W69 sing 525 n n C22 H13 W69 sing 526 n n C22 H14 W69 sing 527 n n C22 H15 W69 sing 528 n n C16 H16 W69 sing 529 n n C09 H17 W69 sing 530 n n C09 H18 W69 sing 531 n n C08 H19 W69 sing 532 n n C08 H20 W69 sing 533 n n N02 H21 W69 sing 534 n n N02 H22 W69 sing 535 n n C03 H23 W69 sing 536 n n C05 H24 W69 sing 537 n n C07 H25 W69 sing 538 n n C07 H26 W69 sing 539 n n C07 H27 W69 sing 540 n n # _atom_sites.entry_id 6AV1 _atom_sites.fract_transf_matrix[1][1] 0.019062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 W69 A 1 803 800 W69 W69 . F 5 ZN A 1 804 900 ZN ZN . G 2 HEM B 1 801 750 HEM HEM . H 3 H4B B 1 802 760 H4B BH4 . I 4 W69 B 1 803 800 W69 W69 . J 6 HOH A 1 901 164 HOH HOH . J 6 HOH A 2 902 157 HOH HOH . J 6 HOH A 3 903 89 HOH HOH . J 6 HOH A 4 904 115 HOH HOH . J 6 HOH A 5 905 181 HOH HOH . J 6 HOH A 6 906 162 HOH HOH . J 6 HOH A 7 907 106 HOH HOH . J 6 HOH A 8 908 5 HOH HOH . J 6 HOH A 9 909 84 HOH HOH . J 6 HOH A 10 910 54 HOH HOH . J 6 HOH A 11 911 176 HOH HOH . J 6 HOH A 12 912 169 HOH HOH . J 6 HOH A 13 913 179 HOH HOH . J 6 HOH A 14 914 62 HOH HOH . J 6 HOH A 15 915 150 HOH HOH . J 6 HOH A 16 916 88 HOH HOH . J 6 HOH A 17 917 60 HOH HOH . J 6 HOH A 18 918 39 HOH HOH . J 6 HOH A 19 919 154 HOH HOH . J 6 HOH A 20 920 139 HOH HOH . J 6 HOH A 21 921 141 HOH HOH . J 6 HOH A 22 922 174 HOH HOH . J 6 HOH A 23 923 175 HOH HOH . J 6 HOH A 24 924 30 HOH HOH . J 6 HOH A 25 925 3 HOH HOH . J 6 HOH A 26 926 13 HOH HOH . J 6 HOH A 27 927 8 HOH HOH . J 6 HOH A 28 928 122 HOH HOH . J 6 HOH A 29 929 69 HOH HOH . J 6 HOH A 30 930 109 HOH HOH . J 6 HOH A 31 931 87 HOH HOH . J 6 HOH A 32 932 27 HOH HOH . J 6 HOH A 33 933 93 HOH HOH . J 6 HOH A 34 934 119 HOH HOH . J 6 HOH A 35 935 2 HOH HOH . J 6 HOH A 36 936 42 HOH HOH . J 6 HOH A 37 937 155 HOH HOH . J 6 HOH A 38 938 161 HOH HOH . J 6 HOH A 39 939 165 HOH HOH . J 6 HOH A 40 940 57 HOH HOH . J 6 HOH A 41 941 128 HOH HOH . J 6 HOH A 42 942 156 HOH HOH . J 6 HOH A 43 943 49 HOH HOH . J 6 HOH A 44 944 20 HOH HOH . J 6 HOH A 45 945 68 HOH HOH . J 6 HOH A 46 946 153 HOH HOH . J 6 HOH A 47 947 98 HOH HOH . J 6 HOH A 48 948 110 HOH HOH . J 6 HOH A 49 949 33 HOH HOH . J 6 HOH A 50 950 29 HOH HOH . J 6 HOH A 51 951 92 HOH HOH . J 6 HOH A 52 952 108 HOH HOH . J 6 HOH A 53 953 59 HOH HOH . J 6 HOH A 54 954 142 HOH HOH . J 6 HOH A 55 955 22 HOH HOH . J 6 HOH A 56 956 72 HOH HOH . J 6 HOH A 57 957 23 HOH HOH . J 6 HOH A 58 958 44 HOH HOH . J 6 HOH A 59 959 34 HOH HOH . J 6 HOH A 60 960 96 HOH HOH . J 6 HOH A 61 961 105 HOH HOH . J 6 HOH A 62 962 163 HOH HOH . J 6 HOH A 63 963 94 HOH HOH . J 6 HOH A 64 964 40 HOH HOH . J 6 HOH A 65 965 126 HOH HOH . J 6 HOH A 66 966 177 HOH HOH . J 6 HOH A 67 967 90 HOH HOH . J 6 HOH A 68 968 75 HOH HOH . J 6 HOH A 69 969 138 HOH HOH . J 6 HOH A 70 970 178 HOH HOH . J 6 HOH A 71 971 180 HOH HOH . J 6 HOH A 72 972 36 HOH HOH . J 6 HOH A 73 973 123 HOH HOH . J 6 HOH A 74 974 85 HOH HOH . J 6 HOH A 75 975 47 HOH HOH . J 6 HOH A 76 976 129 HOH HOH . J 6 HOH A 77 977 35 HOH HOH . J 6 HOH A 78 978 131 HOH HOH . J 6 HOH A 79 979 147 HOH HOH . J 6 HOH A 80 980 95 HOH HOH . J 6 HOH A 81 981 38 HOH HOH . J 6 HOH A 82 982 18 HOH HOH . J 6 HOH A 83 983 140 HOH HOH . J 6 HOH A 84 984 137 HOH HOH . J 6 HOH A 85 985 65 HOH HOH . J 6 HOH A 86 986 19 HOH HOH . J 6 HOH A 87 987 63 HOH HOH . J 6 HOH A 88 988 151 HOH HOH . J 6 HOH A 89 989 152 HOH HOH . J 6 HOH A 90 990 66 HOH HOH . J 6 HOH A 91 991 104 HOH HOH . J 6 HOH A 92 992 77 HOH HOH . J 6 HOH A 93 993 86 HOH HOH . J 6 HOH A 94 994 31 HOH HOH . J 6 HOH A 95 995 117 HOH HOH . J 6 HOH A 96 996 81 HOH HOH . J 6 HOH A 97 997 73 HOH HOH . J 6 HOH A 98 998 112 HOH HOH . J 6 HOH A 99 999 46 HOH HOH . J 6 HOH A 100 1000 116 HOH HOH . J 6 HOH A 101 1001 113 HOH HOH . J 6 HOH A 102 1002 45 HOH HOH . J 6 HOH A 103 1003 166 HOH HOH . J 6 HOH A 104 1004 146 HOH HOH . J 6 HOH A 105 1005 14 HOH HOH . J 6 HOH A 106 1006 136 HOH HOH . J 6 HOH A 107 1007 145 HOH HOH . J 6 HOH A 108 1008 171 HOH HOH . J 6 HOH A 109 1009 167 HOH HOH . J 6 HOH A 110 1010 101 HOH HOH . J 6 HOH A 111 1011 133 HOH HOH . J 6 HOH A 112 1012 121 HOH HOH . J 6 HOH A 113 1013 55 HOH HOH . J 6 HOH A 114 1014 114 HOH HOH . J 6 HOH A 115 1015 182 HOH HOH . J 6 HOH A 116 1016 173 HOH HOH . J 6 HOH A 117 1017 168 HOH HOH . J 6 HOH A 118 1018 149 HOH HOH . J 6 HOH A 119 1019 51 HOH HOH . J 6 HOH A 120 1020 135 HOH HOH . J 6 HOH A 121 1021 134 HOH HOH . J 6 HOH A 122 1022 64 HOH HOH . K 6 HOH B 1 901 196 HOH HOH . K 6 HOH B 2 902 160 HOH HOH . K 6 HOH B 3 903 188 HOH HOH . K 6 HOH B 4 904 187 HOH HOH . K 6 HOH B 5 905 172 HOH HOH . K 6 HOH B 6 906 111 HOH HOH . K 6 HOH B 7 907 16 HOH HOH . K 6 HOH B 8 908 25 HOH HOH . K 6 HOH B 9 909 80 HOH HOH . K 6 HOH B 10 910 199 HOH HOH . K 6 HOH B 11 911 170 HOH HOH . K 6 HOH B 12 912 71 HOH HOH . K 6 HOH B 13 913 12 HOH HOH . K 6 HOH B 14 914 6 HOH HOH . K 6 HOH B 15 915 7 HOH HOH . K 6 HOH B 16 916 79 HOH HOH . K 6 HOH B 17 917 198 HOH HOH . K 6 HOH B 18 918 58 HOH HOH . K 6 HOH B 19 919 190 HOH HOH . K 6 HOH B 20 920 52 HOH HOH . K 6 HOH B 21 921 17 HOH HOH . K 6 HOH B 22 922 32 HOH HOH . K 6 HOH B 23 923 24 HOH HOH . K 6 HOH B 24 924 15 HOH HOH . K 6 HOH B 25 925 189 HOH HOH . K 6 HOH B 26 926 61 HOH HOH . K 6 HOH B 27 927 41 HOH HOH . K 6 HOH B 28 928 10 HOH HOH . K 6 HOH B 29 929 9 HOH HOH . K 6 HOH B 30 930 193 HOH HOH . K 6 HOH B 31 931 53 HOH HOH . K 6 HOH B 32 932 83 HOH HOH . K 6 HOH B 33 933 103 HOH HOH . K 6 HOH B 34 934 120 HOH HOH . K 6 HOH B 35 935 28 HOH HOH . K 6 HOH B 36 936 4 HOH HOH . K 6 HOH B 37 937 197 HOH HOH . K 6 HOH B 38 938 67 HOH HOH . K 6 HOH B 39 939 26 HOH HOH . K 6 HOH B 40 940 118 HOH HOH . K 6 HOH B 41 941 97 HOH HOH . K 6 HOH B 42 942 191 HOH HOH . K 6 HOH B 43 943 1 HOH HOH . K 6 HOH B 44 944 107 HOH HOH . K 6 HOH B 45 945 158 HOH HOH . K 6 HOH B 46 946 78 HOH HOH . K 6 HOH B 47 947 100 HOH HOH . K 6 HOH B 48 948 74 HOH HOH . K 6 HOH B 49 949 11 HOH HOH . K 6 HOH B 50 950 143 HOH HOH . K 6 HOH B 51 951 82 HOH HOH . K 6 HOH B 52 952 50 HOH HOH . K 6 HOH B 53 953 56 HOH HOH . K 6 HOH B 54 954 37 HOH HOH . K 6 HOH B 55 955 192 HOH HOH . K 6 HOH B 56 956 102 HOH HOH . K 6 HOH B 57 957 125 HOH HOH . K 6 HOH B 58 958 148 HOH HOH . K 6 HOH B 59 959 99 HOH HOH . K 6 HOH B 60 960 70 HOH HOH . K 6 HOH B 61 961 21 HOH HOH . K 6 HOH B 62 962 159 HOH HOH . K 6 HOH B 63 963 195 HOH HOH . K 6 HOH B 64 964 43 HOH HOH . K 6 HOH B 65 965 124 HOH HOH . K 6 HOH B 66 966 185 HOH HOH . K 6 HOH B 67 967 91 HOH HOH . K 6 HOH B 68 968 132 HOH HOH . K 6 HOH B 69 969 194 HOH HOH . K 6 HOH B 70 970 183 HOH HOH . K 6 HOH B 71 971 186 HOH HOH . K 6 HOH B 72 972 76 HOH HOH . K 6 HOH B 73 973 48 HOH HOH . K 6 HOH B 74 974 127 HOH HOH . K 6 HOH B 75 975 200 HOH HOH . K 6 HOH B 76 976 144 HOH HOH . K 6 HOH B 77 977 130 HOH HOH . K 6 HOH B 78 978 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F13 W69 . . . E 4 125.598 242.084 359.344 1 75.49 ? F13 W69 803 A 1 HETATM 2 C C13 W69 . . . E 4 124.64 242.776 358.697 1 70.62 ? C13 W69 803 A 1 HETATM 3 C C12 W69 . . . E 4 123.312 242.492 358.985 1 63.9 ? C12 W69 803 A 1 HETATM 4 C C14 W69 . . . E 4 124.959 243.761 357.753 1 70.84 ? C14 W69 803 A 1 HETATM 5 C C15 W69 . . . E 4 123.939 244.461 357.103 1 70.07 ? C15 W69 803 A 1 HETATM 6 C C17 W69 . . . E 4 124.197 245.543 356.073 1 66.46 ? C17 W69 803 A 1 HETATM 7 C C18 W69 . . . E 4 125.666 245.738 355.727 1 61.27 ? C18 W69 803 A 1 HETATM 8 C C19 W69 . . . E 4 125.861 247.096 355.053 1 57.57 ? C19 W69 803 A 1 HETATM 9 N N20 W69 . . . E 4 125.097 247.197 353.797 1 55.05 ? N20 W69 803 A 1 HETATM 10 C C21 W69 . . . E 4 124.645 248.586 353.618 1 64.94 ? C21 W69 803 A 1 HETATM 11 C C22 W69 . . . E 4 125.948 246.829 352.663 1 33.85 ? C22 W69 803 A 1 HETATM 12 C C16 W69 . . . E 4 122.613 244.17 357.4 1 68.05 ? C16 W69 803 A 1 HETATM 13 C C11 W69 . . . E 4 122.302 243.191 358.335 1 61.61 ? C11 W69 803 A 1 HETATM 14 C C09 W69 . . . E 4 120.86 242.879 358.646 1 51.14 ? C09 W69 803 A 1 HETATM 15 C C08 W69 . . . E 4 119.902 243.646 357.739 1 46 ? C08 W69 803 A 1 HETATM 16 C C06 W69 . . . E 4 118.576 243.181 358.263 1 41.47 ? C06 W69 803 A 1 HETATM 17 N N01 W69 . . . E 4 118.053 242.022 357.822 1 37.25 ? N01 W69 803 A 1 HETATM 18 C C02 W69 . . . E 4 116.882 241.581 358.309 1 39.94 ? C02 W69 803 A 1 HETATM 19 N N02 W69 . . . E 4 116.382 240.416 357.837 1 41 ? N02 W69 803 A 1 HETATM 20 C C03 W69 . . . E 4 116.196 242.302 359.291 1 39.14 ? C03 W69 803 A 1 HETATM 21 C C04 W69 . . . E 4 116.729 243.488 359.766 1 35.66 ? C04 W69 803 A 1 HETATM 22 C C05 W69 . . . E 4 117.935 243.923 359.245 1 41.58 ? C05 W69 803 A 1 HETATM 23 C C07 W69 . . . E 4 116.029 244.316 360.817 1 35.85 ? C07 W69 803 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #