data_6AVB # _model_server_result.job_id 5I7Ia76Y3kXJldXqy3ygLw _model_server_result.datetime_utc '2024-11-14 23:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6avb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 6AVB # _exptl.entry_id 6AVB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AVB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 45 C VAL 43 1_555 A N SME 46 C SME 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SME 46 C SME 44 1_555 A N VAL 47 C VAL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLY 48 C GLY 46 1_555 A N SME 49 C SME 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C SME 49 C SME 47 1_555 A N GLY 50 C GLY 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C GLU 74 C GLU 72 1_555 A N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C HIC 75 C HIC 73 1_555 A N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 B C VAL 45 A VAL 43 1_555 B N SME 46 A SME 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 B C SME 46 A SME 44 1_555 B N VAL 47 A VAL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C GLY 48 A GLY 46 1_555 B N SME 49 A SME 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C SME 49 A SME 47 1_555 B N GLY 50 A GLY 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C GLU 74 A GLU 72 1_555 B N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C HIC 75 A HIC 73 1_555 B N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 C C VAL 45 B VAL 43 1_555 C N SME 46 B SME 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 C C SME 46 B SME 44 1_555 C N VAL 47 B VAL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 C C GLY 48 B GLY 46 1_555 C N SME 49 B SME 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 C C SME 49 B SME 47 1_555 C N GLY 50 B GLY 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C GLU 74 B GLU 72 1_555 C N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 C C HIC 75 B HIC 73 1_555 C N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AVB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADP C 1 801 801 ADP ADP . E 2 ADP A 1 801 801 ADP ADP . F 2 ADP B 1 801 801 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 -7.807 14.826 39.769 1 73.7 ? PB ADP 801 A 1 HETATM 2 O O1B ADP . . . E 2 -6.722 15.553 39.024 1 74.07 ? O1B ADP 801 A 1 HETATM 3 O O2B ADP . . . E 2 -9.037 15.665 39.988 1 74.87 ? O2B ADP 801 A 1 HETATM 4 O O3B ADP . . . E 2 -8.067 13.411 39.318 1 72.76 ? O3B ADP 801 A 1 HETATM 5 P PA ADP . . . E 2 -7.3 16.033 42.122 1 74.77 ? PA ADP 801 A 1 HETATM 6 O O1A ADP . . . E 2 -6.883 17.195 41.267 1 75.85 ? O1A ADP 801 A 1 HETATM 7 O O2A ADP . . . E 2 -8.661 16.037 42.758 1 75.06 ? O2A ADP 801 A 1 HETATM 8 O O3A ADP . . . E 2 -7.226 14.698 41.252 1 74.2 ? O3A ADP 801 A 1 HETATM 9 O O5' ADP . . . E 2 -6.197 15.848 43.265 1 74.41 ? O5' ADP 801 A 1 HETATM 10 C C5' ADP . . . E 2 -4.978 16.571 43.19 1 74.91 ? C5' ADP 801 A 1 HETATM 11 C C4' ADP . . . E 2 -3.953 15.876 44.073 1 74.59 ? C4' ADP 801 A 1 HETATM 12 O O4' ADP . . . E 2 -2.643 16.334 43.774 1 75.12 ? O4' ADP 801 A 1 HETATM 13 C C3' ADP . . . E 2 -4.132 16.149 45.546 1 74.78 ? C3' ADP 801 A 1 HETATM 14 O O3' ADP . . . E 2 -4.925 15.135 46.147 1 74.01 ? O3' ADP 801 A 1 HETATM 15 C C2' ADP . . . E 2 -2.731 16.087 46.097 1 75.11 ? C2' ADP 801 A 1 HETATM 16 O O2' ADP . . . E 2 -2.476 14.757 46.533 1 74.51 ? O2' ADP 801 A 1 HETATM 17 C C1' ADP . . . E 2 -1.82 16.366 44.932 1 75.26 ? C1' ADP 801 A 1 HETATM 18 N N9 ADP . . . E 2 -1.298 17.738 45.045 1 76.25 ? N9 ADP 801 A 1 HETATM 19 C C8 ADP . . . E 2 -2.063 18.833 45.139 1 77.17 ? C8 ADP 801 A 1 HETATM 20 N N7 ADP . . . E 2 -1.315 19.958 45.218 1 78.03 ? N7 ADP 801 A 1 HETATM 21 C C5 ADP . . . E 2 -0.033 19.573 45.174 1 77.6 ? C5 ADP 801 A 1 HETATM 22 C C6 ADP . . . E 2 1.267 20.257 45.221 1 78.07 ? C6 ADP 801 A 1 HETATM 23 N N6 ADP . . . E 2 1.33 21.601 45.328 1 79.22 ? N6 ADP 801 A 1 HETATM 24 N N1 ADP . . . E 2 2.376 19.506 45.152 1 77.45 ? N1 ADP 801 A 1 HETATM 25 C C2 ADP . . . E 2 2.307 18.176 45.046 1 76.48 ? C2 ADP 801 A 1 HETATM 26 N N3 ADP . . . E 2 1.161 17.484 45.001 1 76 ? N3 ADP 801 A 1 HETATM 27 C C4 ADP . . . E 2 -0.024 18.114 45.064 1 76.48 ? C4 ADP 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #