data_6AVH # _model_server_result.job_id CWZsaR3UvbV5JcADFnJfIw _model_server_result.datetime_utc '2024-12-09 07:45:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6avh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 6AVH # _exptl.entry_id 6AVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AVH _cell.length_a 180.911 _cell.length_b 191.605 _cell.length_c 319.364 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf2 B SG CYS 191 B CYS 191 1_555 B SG CYS 255 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? disulf ? disulf3 C SG CYS 191 C CYS 191 1_555 C SG CYS 255 C CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 D SG CYS 191 D CYS 191 1_555 D SG CYS 255 D CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6AVH _atom_sites.fract_transf_matrix[1][1] 0.005528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 600 600 AMP AMP . F 2 AMP B 1 600 600 AMP AMP . G 2 AMP C 1 600 600 AMP AMP . H 2 AMP D 1 600 600 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 2 -32.162 36.202 20.404 1 84.42 ? P AMP 600 C 1 HETATM 2 O O1P AMP . . . G 2 -31.059 36.588 19.49 1 72.62 ? O1P AMP 600 C 1 HETATM 3 O O2P AMP . . . G 2 -33.327 35.573 19.734 1 67.15 ? O2P AMP 600 C 1 HETATM 4 O O3P AMP . . . G 2 -32.492 37.168 21.488 1 61.72 ? O3P AMP 600 C 1 HETATM 5 O O5' AMP . . . G 2 -31.53 34.975 21.162 1 68.19 ? O5' AMP 600 C 1 HETATM 6 C C5' AMP . . . G 2 -30.468 35.152 22.085 1 50.33 ? C5' AMP 600 C 1 HETATM 7 C C4' AMP . . . G 2 -30.491 34.094 23.162 1 28.12 ? C4' AMP 600 C 1 HETATM 8 O O4' AMP . . . G 2 -30.107 32.808 22.62 1 20.27 ? O4' AMP 600 C 1 HETATM 9 C C3' AMP . . . G 2 -29.522 34.289 24.295 1 34.59 ? C3' AMP 600 C 1 HETATM 10 O O3' AMP . . . G 2 -29.946 35.299 25.191 1 47.44 ? O3' AMP 600 C 1 HETATM 11 C C2' AMP . . . G 2 -29.428 32.872 24.885 1 32.12 ? C2' AMP 600 C 1 HETATM 12 O O2' AMP . . . G 2 -30.549 32.547 25.692 1 35.25 ? O2' AMP 600 C 1 HETATM 13 C C1' AMP . . . G 2 -29.526 32.014 23.625 1 23.67 ? C1' AMP 600 C 1 HETATM 14 N N9 AMP . . . G 2 -28.199 31.579 23.139 1 33.32 ? N9 AMP 600 C 1 HETATM 15 C C8 AMP . . . G 2 -27.482 32.222 22.181 1 35.86 ? C8 AMP 600 C 1 HETATM 16 N N7 AMP . . . G 2 -26.305 31.581 21.932 1 37.54 ? N7 AMP 600 C 1 HETATM 17 C C5 AMP . . . G 2 -26.258 30.516 22.753 1 33.14 ? C5 AMP 600 C 1 HETATM 18 C C6 AMP . . . G 2 -25.31 29.447 23.011 1 35.89 ? C6 AMP 600 C 1 HETATM 19 N N6 AMP . . . G 2 -24.154 29.396 22.326 1 45.53 ? N6 AMP 600 C 1 HETATM 20 N N1 AMP . . . G 2 -25.634 28.527 23.932 1 36.47 ? N1 AMP 600 C 1 HETATM 21 C C2 AMP . . . G 2 -26.78 28.569 24.606 1 32.52 ? C2 AMP 600 C 1 HETATM 22 N N3 AMP . . . G 2 -27.689 29.515 24.431 1 28.91 ? N3 AMP 600 C 1 HETATM 23 C C4 AMP . . . G 2 -27.492 30.503 23.54 1 26.2 ? C4 AMP 600 C 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #