data_6AVH
#
_model_server_result.job_id            omiGfmQY2xZcOGHvW6k3EA 
_model_server_result.datetime_utc      '2024-11-01 13:28:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6avh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":600}' 
#
_entry.id    6AVH 
#
_exptl.entry_id    6AVH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6AVH 
_cell.length_a            180.911 
_cell.length_b            191.605 
_cell.length_c            319.364 
_cell.Z_PDB               64 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AVH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf2 B SG CYS 191 B CYS 191 1_555 B SG CYS 255 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
disulf ? disulf3 C SG CYS 191 C CYS 191 1_555 C SG CYS 255 C CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 D SG CYS 191 D CYS 191 1_555 D SG CYS 255 D CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     6AVH 
_atom_sites.fract_transf_matrix[1][1]    0.005528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AMP A 1 600 600 AMP AMP . 
F 2 AMP B 1 600 600 AMP AMP . 
G 2 AMP C 1 600 600 AMP AMP . 
H 2 AMP D 1 600 600 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . H 2 -12.623 -12.216 58.089 1 69.31 ? P AMP 600 D 1 
HETATM 2 O O1P AMP . . . H 2 -11.932 -11.44 57.031 1 57.39 ? O1P AMP 600 D 1 
HETATM 3 O O2P AMP . . . H 2 -13.34 -11.323 59.045 1 74.69 ? O2P AMP 600 D 1 
HETATM 4 O O3P AMP . . . H 2 -11.853 -13.281 58.756 1 51.36 ? O3P AMP 600 D 1 
HETATM 5 O O5' AMP . . . H 2 -13.81 -12.879 57.28 1 45.22 ? O5' AMP 600 D 1 
HETATM 6 C C5' AMP . . . H 2 -14.052 -14.264 57.292 1 21.35 ? C5' AMP 600 D 1 
HETATM 7 C C4' AMP . . . H 2 -14.103 -14.864 55.908 1 16.35 ? C4' AMP 600 D 1 
HETATM 8 O O4' AMP . . . H 2 -14.314 -16.291 56.075 1 26.74 ? O4' AMP 600 D 1 
HETATM 9 C C3' AMP . . . H 2 -15.234 -14.428 54.98 1 31.94 ? C3' AMP 600 D 1 
HETATM 10 O O3' AMP . . . H 2 -14.953 -13.266 54.222 1 48.76 ? O3' AMP 600 D 1 
HETATM 11 C C2' AMP . . . H 2 -15.446 -15.659 54.09 1 28.18 ? C2' AMP 600 D 1 
HETATM 12 O O2' AMP . . . H 2 -14.524 -15.734 53.012 1 12.38 ? O2' AMP 600 D 1 
HETATM 13 C C1' AMP . . . H 2 -15.125 -16.804 55.043 1 23.32 ? C1' AMP 600 D 1 
HETATM 14 N N9 AMP . . . H 2 -16.362 -17.375 55.624 1 15.62 ? N9 AMP 600 D 1 
HETATM 15 C C8 AMP . . . H 2 -17.069 -16.793 56.611 1 21.88 ? C8 AMP 600 D 1 
HETATM 16 N N7 AMP . . . H 2 -18.172 -17.518 56.887 1 32.19 ? N7 AMP 600 D 1 
HETATM 17 C C5 AMP . . . H 2 -18.215 -18.578 56.058 1 17.89 ? C5 AMP 600 D 1 
HETATM 18 C C6 AMP . . . H 2 -19.118 -19.726 55.847 1 28.57 ? C6 AMP 600 D 1 
HETATM 19 N N6 AMP . . . H 2 -20.221 -19.859 56.604 1 31.73 ? N6 AMP 600 D 1 
HETATM 20 N N1 AMP . . . H 2 -18.797 -20.636 54.881 1 37.56 ? N1 AMP 600 D 1 
HETATM 21 C C2 AMP . . . H 2 -17.687 -20.484 54.108 1 27.05 ? C2 AMP 600 D 1 
HETATM 22 N N3 AMP . . . H 2 -16.817 -19.446 54.243 1 22.83 ? N3 AMP 600 D 1 
HETATM 23 C C4 AMP . . . H 2 -17.02 -18.479 55.202 1 19.12 ? C4 AMP 600 D 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#