data_6AVI # _model_server_result.job_id XHh9FLFI3qpOF0nxcfr6bg _model_server_result.datetime_utc '2024-10-28 02:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6avi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6AVI # _exptl.entry_id 6AVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.675 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.15 _cell.angle_gamma 90 _cell.entry_id 6AVI _cell.length_a 92.572 _cell.length_b 61.743 _cell.length_c 118.376 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 285 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? covale ? covale2 B SG CYS 84 B CYS 285 1_555 E C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? # _chem_comp.formula 'C13 H9 Cl N2 O3' _chem_comp.formula_weight 276.675 _chem_comp.id GW9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C9 GW9 sing 129 n n C9 C10 GW9 doub 130 n y C9 C8 GW9 sing 131 n y C10 C11 GW9 sing 132 n y C10 H10 GW9 sing 133 n n C11 C12 GW9 doub 134 n y C11 H11 GW9 sing 135 n n C12 N2 GW9 sing 136 n n C12 C13 GW9 sing 137 n y N2 O3 GW9 sing 138 n n N2 O2 GW9 doub 139 n n C13 C8 GW9 doub 140 n y C13 H13 GW9 sing 141 n n C8 C1 GW9 sing 142 n n C1 O1 GW9 doub 143 n n C1 N1 GW9 sing 144 n n N1 C2 GW9 sing 145 n n N1 HN1 GW9 sing 146 n n C2 C7 GW9 doub 147 n y C2 C3 GW9 sing 148 n y C7 C6 GW9 sing 149 n y C7 H7 GW9 sing 150 n n C6 C5 GW9 doub 151 n y C6 H6 GW9 sing 152 n n C5 C4 GW9 sing 153 n y C5 H5 GW9 sing 154 n n C4 C3 GW9 doub 155 n y C4 H4 GW9 sing 156 n n C3 H3 GW9 sing 157 n n # _atom_sites.entry_id 6AVI _atom_sites.fract_transf_matrix[1][1] 0.010802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002326 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 501 GW9 GW9 . D 3 KNA A 1 502 503 KNA KNA . E 2 GW9 B 1 501 501 GW9 GW9 . F 3 KNA B 1 502 503 KNA KNA . G 3 KNA B 1 503 504 KNA KNA . H 4 HOH A 1 601 237 HOH HOH . H 4 HOH A 2 602 95 HOH HOH . H 4 HOH A 3 603 9 HOH HOH . H 4 HOH A 4 604 108 HOH HOH . H 4 HOH A 5 605 55 HOH HOH . H 4 HOH A 6 606 229 HOH HOH . H 4 HOH A 7 607 29 HOH HOH . H 4 HOH A 8 608 71 HOH HOH . H 4 HOH A 9 609 115 HOH HOH . H 4 HOH A 10 610 69 HOH HOH . H 4 HOH A 11 611 11 HOH HOH . H 4 HOH A 12 612 129 HOH HOH . H 4 HOH A 13 613 20 HOH HOH . H 4 HOH A 14 614 188 HOH HOH . H 4 HOH A 15 615 13 HOH HOH . H 4 HOH A 16 616 187 HOH HOH . H 4 HOH A 17 617 30 HOH HOH . H 4 HOH A 18 618 59 HOH HOH . H 4 HOH A 19 619 243 HOH HOH . H 4 HOH A 20 620 46 HOH HOH . H 4 HOH A 21 621 135 HOH HOH . H 4 HOH A 22 622 153 HOH HOH . H 4 HOH A 23 623 83 HOH HOH . H 4 HOH A 24 624 120 HOH HOH . H 4 HOH A 25 625 1 HOH HOH . H 4 HOH A 26 626 49 HOH HOH . H 4 HOH A 27 627 17 HOH HOH . H 4 HOH A 28 628 57 HOH HOH . H 4 HOH A 29 629 25 HOH HOH . H 4 HOH A 30 630 107 HOH HOH . H 4 HOH A 31 631 26 HOH HOH . H 4 HOH A 32 632 6 HOH HOH . H 4 HOH A 33 633 110 HOH HOH . H 4 HOH A 34 634 81 HOH HOH . H 4 HOH A 35 635 16 HOH HOH . H 4 HOH A 36 636 38 HOH HOH . H 4 HOH A 37 637 105 HOH HOH . H 4 HOH A 38 638 102 HOH HOH . H 4 HOH A 39 639 62 HOH HOH . H 4 HOH A 40 640 61 HOH HOH . H 4 HOH A 41 641 63 HOH HOH . H 4 HOH A 42 642 182 HOH HOH . H 4 HOH A 43 643 76 HOH HOH . H 4 HOH A 44 644 171 HOH HOH . H 4 HOH A 45 645 169 HOH HOH . H 4 HOH A 46 646 41 HOH HOH . H 4 HOH A 47 647 190 HOH HOH . H 4 HOH A 48 648 223 HOH HOH . H 4 HOH A 49 649 8 HOH HOH . H 4 HOH A 50 650 82 HOH HOH . H 4 HOH A 51 651 42 HOH HOH . H 4 HOH A 52 652 109 HOH HOH . H 4 HOH A 53 653 148 HOH HOH . H 4 HOH A 54 654 33 HOH HOH . H 4 HOH A 55 655 58 HOH HOH . H 4 HOH A 56 656 137 HOH HOH . H 4 HOH A 57 657 22 HOH HOH . H 4 HOH A 58 658 27 HOH HOH . H 4 HOH A 59 659 47 HOH HOH . H 4 HOH A 60 660 136 HOH HOH . H 4 HOH A 61 661 207 HOH HOH . H 4 HOH A 62 662 201 HOH HOH . H 4 HOH A 63 663 90 HOH HOH . H 4 HOH A 64 664 114 HOH HOH . H 4 HOH A 65 665 203 HOH HOH . H 4 HOH A 66 666 67 HOH HOH . H 4 HOH A 67 667 28 HOH HOH . H 4 HOH A 68 668 19 HOH HOH . H 4 HOH A 69 669 161 HOH HOH . H 4 HOH A 70 670 79 HOH HOH . H 4 HOH A 71 671 5 HOH HOH . H 4 HOH A 72 672 213 HOH HOH . H 4 HOH A 73 673 117 HOH HOH . H 4 HOH A 74 674 150 HOH HOH . H 4 HOH A 75 675 65 HOH HOH . H 4 HOH A 76 676 217 HOH HOH . H 4 HOH A 77 677 111 HOH HOH . H 4 HOH A 78 678 198 HOH HOH . H 4 HOH A 79 679 68 HOH HOH . H 4 HOH A 80 680 175 HOH HOH . H 4 HOH A 81 681 196 HOH HOH . H 4 HOH A 82 682 85 HOH HOH . H 4 HOH A 83 683 147 HOH HOH . H 4 HOH A 84 684 202 HOH HOH . H 4 HOH A 85 685 233 HOH HOH . H 4 HOH A 86 686 15 HOH HOH . H 4 HOH A 87 687 241 HOH HOH . H 4 HOH A 88 688 45 HOH HOH . H 4 HOH A 89 689 133 HOH HOH . H 4 HOH A 90 690 238 HOH HOH . H 4 HOH A 91 691 206 HOH HOH . H 4 HOH A 92 692 127 HOH HOH . H 4 HOH A 93 693 221 HOH HOH . H 4 HOH A 94 694 149 HOH HOH . H 4 HOH A 95 695 66 HOH HOH . H 4 HOH A 96 696 144 HOH HOH . H 4 HOH A 97 697 176 HOH HOH . H 4 HOH A 98 698 98 HOH HOH . H 4 HOH A 99 699 178 HOH HOH . H 4 HOH A 100 700 226 HOH HOH . H 4 HOH A 101 701 151 HOH HOH . H 4 HOH A 102 702 235 HOH HOH . H 4 HOH A 103 703 37 HOH HOH . H 4 HOH A 104 704 152 HOH HOH . H 4 HOH A 105 705 74 HOH HOH . H 4 HOH A 106 706 50 HOH HOH . H 4 HOH A 107 707 138 HOH HOH . H 4 HOH A 108 708 44 HOH HOH . H 4 HOH A 109 709 53 HOH HOH . H 4 HOH A 110 710 234 HOH HOH . H 4 HOH A 111 711 177 HOH HOH . H 4 HOH A 112 712 186 HOH HOH . H 4 HOH A 113 713 211 HOH HOH . H 4 HOH A 114 714 132 HOH HOH . H 4 HOH A 115 715 113 HOH HOH . H 4 HOH A 116 716 39 HOH HOH . H 4 HOH A 117 717 145 HOH HOH . H 4 HOH A 118 718 216 HOH HOH . H 4 HOH A 119 719 91 HOH HOH . H 4 HOH A 120 720 191 HOH HOH . H 4 HOH A 121 721 173 HOH HOH . H 4 HOH A 122 722 242 HOH HOH . I 4 HOH B 1 601 205 HOH HOH . I 4 HOH B 2 602 230 HOH HOH . I 4 HOH B 3 603 195 HOH HOH . I 4 HOH B 4 604 89 HOH HOH . I 4 HOH B 5 605 146 HOH HOH . I 4 HOH B 6 606 10 HOH HOH . I 4 HOH B 7 607 36 HOH HOH . I 4 HOH B 8 608 231 HOH HOH . I 4 HOH B 9 609 193 HOH HOH . I 4 HOH B 10 610 100 HOH HOH . I 4 HOH B 11 611 34 HOH HOH . I 4 HOH B 12 612 72 HOH HOH . I 4 HOH B 13 613 164 HOH HOH . I 4 HOH B 14 614 218 HOH HOH . I 4 HOH B 15 615 215 HOH HOH . I 4 HOH B 16 616 94 HOH HOH . I 4 HOH B 17 617 93 HOH HOH . I 4 HOH B 18 618 124 HOH HOH . I 4 HOH B 19 619 208 HOH HOH . I 4 HOH B 20 620 7 HOH HOH . I 4 HOH B 21 621 220 HOH HOH . I 4 HOH B 22 622 51 HOH HOH . I 4 HOH B 23 623 3 HOH HOH . I 4 HOH B 24 624 236 HOH HOH . I 4 HOH B 25 625 143 HOH HOH . I 4 HOH B 26 626 130 HOH HOH . I 4 HOH B 27 627 142 HOH HOH . I 4 HOH B 28 628 199 HOH HOH . I 4 HOH B 29 629 21 HOH HOH . I 4 HOH B 30 630 159 HOH HOH . I 4 HOH B 31 631 75 HOH HOH . I 4 HOH B 32 632 131 HOH HOH . I 4 HOH B 33 633 239 HOH HOH . I 4 HOH B 34 634 2 HOH HOH . I 4 HOH B 35 635 78 HOH HOH . I 4 HOH B 36 636 52 HOH HOH . I 4 HOH B 37 637 64 HOH HOH . I 4 HOH B 38 638 87 HOH HOH . I 4 HOH B 39 639 181 HOH HOH . I 4 HOH B 40 640 86 HOH HOH . I 4 HOH B 41 641 224 HOH HOH . I 4 HOH B 42 642 185 HOH HOH . I 4 HOH B 43 643 31 HOH HOH . I 4 HOH B 44 644 77 HOH HOH . I 4 HOH B 45 645 32 HOH HOH . I 4 HOH B 46 646 88 HOH HOH . I 4 HOH B 47 647 214 HOH HOH . I 4 HOH B 48 648 134 HOH HOH . I 4 HOH B 49 649 101 HOH HOH . I 4 HOH B 50 650 158 HOH HOH . I 4 HOH B 51 651 104 HOH HOH . I 4 HOH B 52 652 128 HOH HOH . I 4 HOH B 53 653 141 HOH HOH . I 4 HOH B 54 654 184 HOH HOH . I 4 HOH B 55 655 60 HOH HOH . I 4 HOH B 56 656 84 HOH HOH . I 4 HOH B 57 657 43 HOH HOH . I 4 HOH B 58 658 123 HOH HOH . I 4 HOH B 59 659 35 HOH HOH . I 4 HOH B 60 660 116 HOH HOH . I 4 HOH B 61 661 4 HOH HOH . I 4 HOH B 62 662 80 HOH HOH . I 4 HOH B 63 663 103 HOH HOH . I 4 HOH B 64 664 121 HOH HOH . I 4 HOH B 65 665 18 HOH HOH . I 4 HOH B 66 666 14 HOH HOH . I 4 HOH B 67 667 23 HOH HOH . I 4 HOH B 68 668 179 HOH HOH . I 4 HOH B 69 669 194 HOH HOH . I 4 HOH B 70 670 200 HOH HOH . I 4 HOH B 71 671 99 HOH HOH . I 4 HOH B 72 672 139 HOH HOH . I 4 HOH B 73 673 48 HOH HOH . I 4 HOH B 74 674 228 HOH HOH . I 4 HOH B 75 675 125 HOH HOH . I 4 HOH B 76 676 119 HOH HOH . I 4 HOH B 77 677 225 HOH HOH . I 4 HOH B 78 678 165 HOH HOH . I 4 HOH B 79 679 160 HOH HOH . I 4 HOH B 80 680 180 HOH HOH . I 4 HOH B 81 681 209 HOH HOH . I 4 HOH B 82 682 96 HOH HOH . I 4 HOH B 83 683 92 HOH HOH . I 4 HOH B 84 684 219 HOH HOH . I 4 HOH B 85 685 122 HOH HOH . I 4 HOH B 86 686 118 HOH HOH . I 4 HOH B 87 687 155 HOH HOH . I 4 HOH B 88 688 40 HOH HOH . I 4 HOH B 89 689 106 HOH HOH . I 4 HOH B 90 690 54 HOH HOH . I 4 HOH B 91 691 197 HOH HOH . I 4 HOH B 92 692 189 HOH HOH . I 4 HOH B 93 693 204 HOH HOH . I 4 HOH B 94 694 227 HOH HOH . I 4 HOH B 95 695 183 HOH HOH . I 4 HOH B 96 696 210 HOH HOH . I 4 HOH B 97 697 232 HOH HOH . I 4 HOH B 98 698 156 HOH HOH . I 4 HOH B 99 699 12 HOH HOH . I 4 HOH B 100 700 24 HOH HOH . I 4 HOH B 101 701 170 HOH HOH . I 4 HOH B 102 702 70 HOH HOH . I 4 HOH B 103 703 167 HOH HOH . I 4 HOH B 104 704 157 HOH HOH . I 4 HOH B 105 705 56 HOH HOH . I 4 HOH B 106 706 154 HOH HOH . I 4 HOH B 107 707 174 HOH HOH . I 4 HOH B 108 708 73 HOH HOH . I 4 HOH B 109 709 162 HOH HOH . I 4 HOH B 110 710 240 HOH HOH . I 4 HOH B 111 711 140 HOH HOH . I 4 HOH B 112 712 172 HOH HOH . I 4 HOH B 113 713 97 HOH HOH . I 4 HOH B 114 714 192 HOH HOH . I 4 HOH B 115 715 163 HOH HOH . I 4 HOH B 116 716 126 HOH HOH . I 4 HOH B 117 717 112 HOH HOH . I 4 HOH B 118 718 212 HOH HOH . I 4 HOH B 119 719 166 HOH HOH . I 4 HOH B 120 720 168 HOH HOH . I 4 HOH B 121 721 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 GW9 . . . E 2 38.622 38.937 37.431 1 46.6 ? C9 GW9 501 B 1 HETATM 2 C C10 GW9 . . . E 2 39.661 39.778 37.058 1 48.13 ? C10 GW9 501 B 1 HETATM 3 C C11 GW9 . . . E 2 39.984 39.946 35.713 1 52 ? C11 GW9 501 B 1 HETATM 4 C C12 GW9 . . . E 2 39.279 39.294 34.711 1 51.18 ? C12 GW9 501 B 1 HETATM 5 N N2 GW9 . . . E 2 39.65 39.487 33.299 1 58.67 ? N2 GW9 501 B 1 HETATM 6 O O3 GW9 . . . E 2 40.976 39.855 32.978 1 62.17 ? O3 GW9 501 B 1 HETATM 7 O O2 GW9 . . . E 2 38.862 39.329 32.429 1 56.34 ? O2 GW9 501 B 1 HETATM 8 C C13 GW9 . . . E 2 38.237 38.449 35.083 1 51.62 ? C13 GW9 501 B 1 HETATM 9 C C8 GW9 . . . E 2 37.902 38.286 36.434 1 51.32 ? C8 GW9 501 B 1 HETATM 10 C C1 GW9 . . . E 2 36.767 37.331 36.818 1 45.13 ? C1 GW9 501 B 1 HETATM 11 O O1 GW9 . . . E 2 35.652 37.701 37.015 1 42.6 ? O1 GW9 501 B 1 HETATM 12 N N1 GW9 . . . E 2 37.156 35.939 36.921 1 37.08 ? N1 GW9 501 B 1 HETATM 13 C C2 GW9 . . . E 2 36.278 34.854 37.256 1 30.15 ? C2 GW9 501 B 1 HETATM 14 C C7 GW9 . . . E 2 35.805 34.037 36.241 1 24.99 ? C7 GW9 501 B 1 HETATM 15 C C6 GW9 . . . E 2 34.974 32.973 36.537 1 26.8 ? C6 GW9 501 B 1 HETATM 16 C C5 GW9 . . . E 2 34.632 32.732 37.859 1 31.27 ? C5 GW9 501 B 1 HETATM 17 C C4 GW9 . . . E 2 35.113 33.549 38.867 1 30.91 ? C4 GW9 501 B 1 HETATM 18 C C3 GW9 . . . E 2 35.945 34.614 38.574 1 28.95 ? C3 GW9 501 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #