data_6AVN # _model_server_result.job_id NG9Td5uwpzs6A3jX65ySYQ _model_server_result.datetime_utc '2024-10-23 20:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6avn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6AVN # _exptl.entry_id 6AVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AVN _cell.length_a 69.783 _cell.length_b 69.783 _cell.length_c 193.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 147 H CYS 140 1_555 A SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 22 L CYS 23 1_555 B SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 132 L CYS 134 1_555 B SG CYS 191 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 6AVN _atom_sites.fract_transf_matrix[1][1] 0.01433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL H 1 301 2 GOL GOL . D 3 GOL H 1 302 4 GOL GOL . E 4 1PE H 1 303 1 1PE 1PE . F 3 GOL L 1 301 1 GOL GOL . G 3 GOL L 1 302 3 GOL GOL . H 5 HOH H 1 401 74 HOH HOH . H 5 HOH H 2 402 30 HOH HOH . H 5 HOH H 3 403 79 HOH HOH . H 5 HOH H 4 404 80 HOH HOH . H 5 HOH H 5 405 46 HOH HOH . H 5 HOH H 6 406 1 HOH HOH . H 5 HOH H 7 407 32 HOH HOH . H 5 HOH H 8 408 20 HOH HOH . H 5 HOH H 9 409 27 HOH HOH . H 5 HOH H 10 410 38 HOH HOH . H 5 HOH H 11 411 89 HOH HOH . H 5 HOH H 12 412 91 HOH HOH . H 5 HOH H 13 413 56 HOH HOH . H 5 HOH H 14 414 29 HOH HOH . H 5 HOH H 15 415 31 HOH HOH . H 5 HOH H 16 416 103 HOH HOH . H 5 HOH H 17 417 4 HOH HOH . H 5 HOH H 18 418 154 HOH HOH . H 5 HOH H 19 419 67 HOH HOH . H 5 HOH H 20 420 34 HOH HOH . H 5 HOH H 21 421 5 HOH HOH . H 5 HOH H 22 422 96 HOH HOH . H 5 HOH H 23 423 113 HOH HOH . H 5 HOH H 24 424 3 HOH HOH . H 5 HOH H 25 425 7 HOH HOH . H 5 HOH H 26 426 39 HOH HOH . H 5 HOH H 27 427 13 HOH HOH . H 5 HOH H 28 428 126 HOH HOH . H 5 HOH H 29 429 53 HOH HOH . H 5 HOH H 30 430 48 HOH HOH . H 5 HOH H 31 431 37 HOH HOH . H 5 HOH H 32 432 142 HOH HOH . H 5 HOH H 33 433 52 HOH HOH . H 5 HOH H 34 434 55 HOH HOH . H 5 HOH H 35 435 111 HOH HOH . H 5 HOH H 36 436 146 HOH HOH . H 5 HOH H 37 437 11 HOH HOH . H 5 HOH H 38 438 61 HOH HOH . H 5 HOH H 39 439 97 HOH HOH . H 5 HOH H 40 440 25 HOH HOH . H 5 HOH H 41 441 14 HOH HOH . H 5 HOH H 42 442 66 HOH HOH . H 5 HOH H 43 443 137 HOH HOH . H 5 HOH H 44 444 71 HOH HOH . H 5 HOH H 45 445 6 HOH HOH . H 5 HOH H 46 446 60 HOH HOH . H 5 HOH H 47 447 64 HOH HOH . H 5 HOH H 48 448 70 HOH HOH . H 5 HOH H 49 449 17 HOH HOH . H 5 HOH H 50 450 145 HOH HOH . H 5 HOH H 51 451 40 HOH HOH . H 5 HOH H 52 452 102 HOH HOH . H 5 HOH H 53 453 158 HOH HOH . H 5 HOH H 54 454 2 HOH HOH . H 5 HOH H 55 455 133 HOH HOH . H 5 HOH H 56 456 54 HOH HOH . H 5 HOH H 57 457 148 HOH HOH . H 5 HOH H 58 458 59 HOH HOH . H 5 HOH H 59 459 43 HOH HOH . H 5 HOH H 60 460 99 HOH HOH . H 5 HOH H 61 461 157 HOH HOH . H 5 HOH H 62 462 62 HOH HOH . H 5 HOH H 63 463 132 HOH HOH . H 5 HOH H 64 464 144 HOH HOH . H 5 HOH H 65 465 128 HOH HOH . H 5 HOH H 66 466 156 HOH HOH . H 5 HOH H 67 467 94 HOH HOH . H 5 HOH H 68 468 163 HOH HOH . H 5 HOH H 69 469 8 HOH HOH . H 5 HOH H 70 470 164 HOH HOH . H 5 HOH H 71 471 104 HOH HOH . H 5 HOH H 72 472 159 HOH HOH . H 5 HOH H 73 473 106 HOH HOH . H 5 HOH H 74 474 134 HOH HOH . H 5 HOH H 75 475 162 HOH HOH . H 5 HOH H 76 476 110 HOH HOH . H 5 HOH H 77 477 117 HOH HOH . H 5 HOH H 78 478 152 HOH HOH . H 5 HOH H 79 479 138 HOH HOH . H 5 HOH H 80 480 125 HOH HOH . H 5 HOH H 81 481 100 HOH HOH . H 5 HOH H 82 482 140 HOH HOH . H 5 HOH H 83 483 150 HOH HOH . H 5 HOH H 84 484 124 HOH HOH . I 5 HOH L 1 401 115 HOH HOH . I 5 HOH L 2 402 36 HOH HOH . I 5 HOH L 3 403 42 HOH HOH . I 5 HOH L 4 404 82 HOH HOH . I 5 HOH L 5 405 10 HOH HOH . I 5 HOH L 6 406 107 HOH HOH . I 5 HOH L 7 407 92 HOH HOH . I 5 HOH L 8 408 93 HOH HOH . I 5 HOH L 9 409 105 HOH HOH . I 5 HOH L 10 410 15 HOH HOH . I 5 HOH L 11 411 78 HOH HOH . I 5 HOH L 12 412 22 HOH HOH . I 5 HOH L 13 413 26 HOH HOH . I 5 HOH L 14 414 114 HOH HOH . I 5 HOH L 15 415 75 HOH HOH . I 5 HOH L 16 416 9 HOH HOH . I 5 HOH L 17 417 18 HOH HOH . I 5 HOH L 18 418 16 HOH HOH . I 5 HOH L 19 419 147 HOH HOH . I 5 HOH L 20 420 81 HOH HOH . I 5 HOH L 21 421 65 HOH HOH . I 5 HOH L 22 422 77 HOH HOH . I 5 HOH L 23 423 87 HOH HOH . I 5 HOH L 24 424 76 HOH HOH . I 5 HOH L 25 425 19 HOH HOH . I 5 HOH L 26 426 112 HOH HOH . I 5 HOH L 27 427 35 HOH HOH . I 5 HOH L 28 428 135 HOH HOH . I 5 HOH L 29 429 116 HOH HOH . I 5 HOH L 30 430 69 HOH HOH . I 5 HOH L 31 431 68 HOH HOH . I 5 HOH L 32 432 21 HOH HOH . I 5 HOH L 33 433 84 HOH HOH . I 5 HOH L 34 434 101 HOH HOH . I 5 HOH L 35 435 85 HOH HOH . I 5 HOH L 36 436 12 HOH HOH . I 5 HOH L 37 437 63 HOH HOH . I 5 HOH L 38 438 28 HOH HOH . I 5 HOH L 39 439 72 HOH HOH . I 5 HOH L 40 440 51 HOH HOH . I 5 HOH L 41 441 44 HOH HOH . I 5 HOH L 42 442 57 HOH HOH . I 5 HOH L 43 443 139 HOH HOH . I 5 HOH L 44 444 45 HOH HOH . I 5 HOH L 45 445 24 HOH HOH . I 5 HOH L 46 446 49 HOH HOH . I 5 HOH L 47 447 47 HOH HOH . I 5 HOH L 48 448 118 HOH HOH . I 5 HOH L 49 449 86 HOH HOH . I 5 HOH L 50 450 109 HOH HOH . I 5 HOH L 51 451 98 HOH HOH . I 5 HOH L 52 452 33 HOH HOH . I 5 HOH L 53 453 23 HOH HOH . I 5 HOH L 54 454 129 HOH HOH . I 5 HOH L 55 455 90 HOH HOH . I 5 HOH L 56 456 136 HOH HOH . I 5 HOH L 57 457 50 HOH HOH . I 5 HOH L 58 458 161 HOH HOH . I 5 HOH L 59 459 127 HOH HOH . I 5 HOH L 60 460 122 HOH HOH . I 5 HOH L 61 461 153 HOH HOH . I 5 HOH L 62 462 160 HOH HOH . I 5 HOH L 63 463 108 HOH HOH . I 5 HOH L 64 464 149 HOH HOH . I 5 HOH L 65 465 83 HOH HOH . I 5 HOH L 66 466 131 HOH HOH . I 5 HOH L 67 467 141 HOH HOH . I 5 HOH L 68 468 95 HOH HOH . I 5 HOH L 69 469 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 5.196 -19.814 5.126 1 62.15 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . F 3 5.43 -19.615 6.48 1 61.94 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . F 3 4.797 -18.444 4.548 1 62.44 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . F 3 3.458 -18.151 4.775 1 64.14 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . F 3 5.138 -18.541 3.049 1 61 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . F 3 4.6 -17.411 2.449 1 59.65 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #