data_6AVP # _model_server_result.job_id JfM3UcJMKuDcC9cnvwyrYg _model_server_result.datetime_utc '2024-10-11 03:15:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6avp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 6AVP # _exptl.entry_id 6AVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.24 _cell.angle_gamma 90 _cell.entry_id 6AVP _cell.length_a 72.571 _cell.length_b 56.705 _cell.length_c 133.075 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K,L,M,Q,S 1 1 B,D,H,I,J,N,O,P,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2B ADP . A ADP 301 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc2 F O03 N7E . A N7E 302 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 G MG MG . A MG 303 1_555 Q O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 G MG MG . A MG 303 1_555 Q O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 G MG MG . A MG 303 1_555 Q O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 G MG MG . A MG 303 1_555 Q O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 H O2B ADP . B ADP 301 1_555 J MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 I O03 N7E . B N7E 302 1_555 J MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 J MG MG . B MG 303 1_555 R O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc10 J MG MG . B MG 303 1_555 R O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc11 J MG MG . B MG 303 1_555 R O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc12 J MG MG . B MG 303 1_555 R O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc13 K O1B ADP . C ADP 301 1_555 M MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 L O03 N7E . C N7E 302 1_555 M MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc15 M MG MG . C MG 303 1_555 S O HOH . C HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc16 M MG MG . C MG 303 1_555 S O HOH . C HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc17 M MG MG . C MG 303 1_555 S O HOH . C HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc18 M MG MG . C MG 303 1_555 S O HOH . C HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc19 N O2B ADP . D ADP 301 1_555 P MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc20 O O03 N7E . D N7E 302 1_555 P MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc21 P MG MG . D MG 303 1_555 T O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc22 P MG MG . D MG 303 1_555 T O HOH . D HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc23 P MG MG . D MG 303 1_555 T O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc24 P MG MG . D MG 303 1_555 T O HOH . D HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AVP _atom_sites.fract_transf_matrix[1][1] 0.01378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 301 302 ADP ADP . F 3 N7E A 1 302 303 N7E N7E . G 4 MG A 1 303 1 MG MG . H 2 ADP B 1 301 302 ADP ADP . I 3 N7E B 1 302 303 N7E N7E . J 4 MG B 1 303 2 MG MG . K 2 ADP C 1 301 302 ADP ADP . L 3 N7E C 1 302 303 N7E N7E . M 4 MG C 1 303 3 MG MG . N 2 ADP D 1 301 302 ADP ADP . O 3 N7E D 1 302 303 N7E N7E . P 4 MG D 1 303 4 MG MG . Q 5 HOH A 1 401 253 HOH HOH . Q 5 HOH A 2 402 254 HOH HOH . Q 5 HOH A 3 403 241 HOH HOH . Q 5 HOH A 4 404 160 HOH HOH . Q 5 HOH A 5 405 34 HOH HOH . Q 5 HOH A 6 406 259 HOH HOH . Q 5 HOH A 7 407 3 HOH HOH . Q 5 HOH A 8 408 18 HOH HOH . Q 5 HOH A 9 409 2 HOH HOH . Q 5 HOH A 10 410 170 HOH HOH . Q 5 HOH A 11 411 128 HOH HOH . Q 5 HOH A 12 412 33 HOH HOH . Q 5 HOH A 13 413 163 HOH HOH . Q 5 HOH A 14 414 168 HOH HOH . Q 5 HOH A 15 415 136 HOH HOH . Q 5 HOH A 16 416 58 HOH HOH . Q 5 HOH A 17 417 108 HOH HOH . Q 5 HOH A 18 418 198 HOH HOH . Q 5 HOH A 19 419 172 HOH HOH . Q 5 HOH A 20 420 138 HOH HOH . Q 5 HOH A 21 421 63 HOH HOH . Q 5 HOH A 22 422 173 HOH HOH . Q 5 HOH A 23 423 199 HOH HOH . Q 5 HOH A 24 424 134 HOH HOH . Q 5 HOH A 25 425 191 HOH HOH . Q 5 HOH A 26 426 258 HOH HOH . Q 5 HOH A 27 427 13 HOH HOH . Q 5 HOH A 28 428 113 HOH HOH . Q 5 HOH A 29 429 235 HOH HOH . Q 5 HOH A 30 430 21 HOH HOH . Q 5 HOH A 31 431 171 HOH HOH . Q 5 HOH A 32 432 37 HOH HOH . Q 5 HOH A 33 433 39 HOH HOH . Q 5 HOH A 34 434 127 HOH HOH . Q 5 HOH A 35 435 139 HOH HOH . Q 5 HOH A 36 436 194 HOH HOH . Q 5 HOH A 37 437 65 HOH HOH . Q 5 HOH A 38 438 56 HOH HOH . Q 5 HOH A 39 439 14 HOH HOH . Q 5 HOH A 40 440 50 HOH HOH . Q 5 HOH A 41 441 12 HOH HOH . Q 5 HOH A 42 442 142 HOH HOH . Q 5 HOH A 43 443 48 HOH HOH . Q 5 HOH A 44 444 236 HOH HOH . Q 5 HOH A 45 445 242 HOH HOH . Q 5 HOH A 46 446 231 HOH HOH . Q 5 HOH A 47 447 266 HOH HOH . R 5 HOH B 1 401 260 HOH HOH . R 5 HOH B 2 402 232 HOH HOH . R 5 HOH B 3 403 8 HOH HOH . R 5 HOH B 4 404 143 HOH HOH . R 5 HOH B 5 405 69 HOH HOH . R 5 HOH B 6 406 5 HOH HOH . R 5 HOH B 7 407 225 HOH HOH . R 5 HOH B 8 408 257 HOH HOH . R 5 HOH B 9 409 27 HOH HOH . R 5 HOH B 10 410 220 HOH HOH . R 5 HOH B 11 411 221 HOH HOH . R 5 HOH B 12 412 120 HOH HOH . R 5 HOH B 13 413 32 HOH HOH . R 5 HOH B 14 414 219 HOH HOH . R 5 HOH B 15 415 64 HOH HOH . R 5 HOH B 16 416 26 HOH HOH . R 5 HOH B 17 417 40 HOH HOH . R 5 HOH B 18 418 204 HOH HOH . R 5 HOH B 19 419 80 HOH HOH . R 5 HOH B 20 420 30 HOH HOH . R 5 HOH B 21 421 155 HOH HOH . R 5 HOH B 22 422 97 HOH HOH . R 5 HOH B 23 423 22 HOH HOH . R 5 HOH B 24 424 88 HOH HOH . R 5 HOH B 25 425 104 HOH HOH . R 5 HOH B 26 426 183 HOH HOH . R 5 HOH B 27 427 117 HOH HOH . R 5 HOH B 28 428 158 HOH HOH . R 5 HOH B 29 429 59 HOH HOH . R 5 HOH B 30 430 52 HOH HOH . R 5 HOH B 31 431 23 HOH HOH . R 5 HOH B 32 432 140 HOH HOH . R 5 HOH B 33 433 74 HOH HOH . R 5 HOH B 34 434 110 HOH HOH . R 5 HOH B 35 435 49 HOH HOH . R 5 HOH B 36 436 210 HOH HOH . R 5 HOH B 37 437 244 HOH HOH . R 5 HOH B 38 438 175 HOH HOH . R 5 HOH B 39 439 112 HOH HOH . R 5 HOH B 40 440 121 HOH HOH . R 5 HOH B 41 441 57 HOH HOH . R 5 HOH B 42 442 144 HOH HOH . R 5 HOH B 43 443 261 HOH HOH . R 5 HOH B 44 444 182 HOH HOH . R 5 HOH B 45 445 263 HOH HOH . R 5 HOH B 46 446 211 HOH HOH . S 5 HOH C 1 401 251 HOH HOH . S 5 HOH C 2 402 222 HOH HOH . S 5 HOH C 3 403 249 HOH HOH . S 5 HOH C 4 404 129 HOH HOH . S 5 HOH C 5 405 4 HOH HOH . S 5 HOH C 6 406 149 HOH HOH . S 5 HOH C 7 407 218 HOH HOH . S 5 HOH C 8 408 224 HOH HOH . S 5 HOH C 9 409 83 HOH HOH . S 5 HOH C 10 410 150 HOH HOH . S 5 HOH C 11 411 130 HOH HOH . S 5 HOH C 12 412 47 HOH HOH . S 5 HOH C 13 413 215 HOH HOH . S 5 HOH C 14 414 212 HOH HOH . S 5 HOH C 15 415 119 HOH HOH . S 5 HOH C 16 416 36 HOH HOH . S 5 HOH C 17 417 1 HOH HOH . S 5 HOH C 18 418 115 HOH HOH . S 5 HOH C 19 419 25 HOH HOH . S 5 HOH C 20 420 46 HOH HOH . S 5 HOH C 21 421 70 HOH HOH . S 5 HOH C 22 422 217 HOH HOH . S 5 HOH C 23 423 9 HOH HOH . S 5 HOH C 24 424 11 HOH HOH . S 5 HOH C 25 425 233 HOH HOH . S 5 HOH C 26 426 216 HOH HOH . S 5 HOH C 27 427 99 HOH HOH . S 5 HOH C 28 428 103 HOH HOH . S 5 HOH C 29 429 91 HOH HOH . S 5 HOH C 30 430 118 HOH HOH . S 5 HOH C 31 431 126 HOH HOH . S 5 HOH C 32 432 178 HOH HOH . S 5 HOH C 33 433 179 HOH HOH . S 5 HOH C 34 434 77 HOH HOH . S 5 HOH C 35 435 35 HOH HOH . S 5 HOH C 36 436 256 HOH HOH . S 5 HOH C 37 437 15 HOH HOH . S 5 HOH C 38 438 248 HOH HOH . S 5 HOH C 39 439 41 HOH HOH . S 5 HOH C 40 440 95 HOH HOH . S 5 HOH C 41 441 185 HOH HOH . S 5 HOH C 42 442 187 HOH HOH . S 5 HOH C 43 443 82 HOH HOH . S 5 HOH C 44 444 214 HOH HOH . S 5 HOH C 45 445 78 HOH HOH . S 5 HOH C 46 446 264 HOH HOH . S 5 HOH C 47 447 213 HOH HOH . S 5 HOH C 48 448 31 HOH HOH . S 5 HOH C 49 449 243 HOH HOH . S 5 HOH C 50 450 16 HOH HOH . S 5 HOH C 51 451 255 HOH HOH . S 5 HOH C 52 452 156 HOH HOH . S 5 HOH C 53 453 252 HOH HOH . S 5 HOH C 54 454 234 HOH HOH . S 5 HOH C 55 455 250 HOH HOH . S 5 HOH C 56 456 79 HOH HOH . S 5 HOH C 57 457 262 HOH HOH . T 5 HOH D 1 401 227 HOH HOH . T 5 HOH D 2 402 228 HOH HOH . T 5 HOH D 3 403 226 HOH HOH . T 5 HOH D 4 404 125 HOH HOH . T 5 HOH D 5 405 237 HOH HOH . T 5 HOH D 6 406 229 HOH HOH . T 5 HOH D 7 407 245 HOH HOH . T 5 HOH D 8 408 7 HOH HOH . T 5 HOH D 9 409 230 HOH HOH . T 5 HOH D 10 410 193 HOH HOH . T 5 HOH D 11 411 86 HOH HOH . T 5 HOH D 12 412 75 HOH HOH . T 5 HOH D 13 413 6 HOH HOH . T 5 HOH D 14 414 73 HOH HOH . T 5 HOH D 15 415 238 HOH HOH . T 5 HOH D 16 416 44 HOH HOH . T 5 HOH D 17 417 116 HOH HOH . T 5 HOH D 18 418 66 HOH HOH . T 5 HOH D 19 419 162 HOH HOH . T 5 HOH D 20 420 200 HOH HOH . T 5 HOH D 21 421 205 HOH HOH . T 5 HOH D 22 422 153 HOH HOH . T 5 HOH D 23 423 206 HOH HOH . T 5 HOH D 24 424 131 HOH HOH . T 5 HOH D 25 425 239 HOH HOH . T 5 HOH D 26 426 45 HOH HOH . T 5 HOH D 27 427 51 HOH HOH . T 5 HOH D 28 428 96 HOH HOH . T 5 HOH D 29 429 132 HOH HOH . T 5 HOH D 30 430 161 HOH HOH . T 5 HOH D 31 431 10 HOH HOH . T 5 HOH D 32 432 105 HOH HOH . T 5 HOH D 33 433 190 HOH HOH . T 5 HOH D 34 434 81 HOH HOH . T 5 HOH D 35 435 167 HOH HOH . T 5 HOH D 36 436 135 HOH HOH . T 5 HOH D 37 437 265 HOH HOH . T 5 HOH D 38 438 246 HOH HOH . T 5 HOH D 39 439 247 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.263 _atom_site.Cartn_y 10.699 _atom_site.Cartn_z 49.441 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 303 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #