data_6AVS
#
_model_server_result.job_id            KMUfTrmf6FIhDNHzqbauwg 
_model_server_result.datetime_utc      '2025-01-12 15:33:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6avs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6AVS 
#
_exptl.entry_id    6AVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              188.228 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6AVS 
_cell.length_a            49.685 
_cell.length_b            65.063 
_cell.length_c            78.139 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 141 A HIS 321 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc2 A OD2 ASP 143 A ASP 323 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc3 A NE2 HIS 220 A HIS 400 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc4 B ZN ZN . A ZN 501 1_555 C O NMM . A NMM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
#
_chem_comp.formula           'C7 H16 N4 O2' 
_chem_comp.formula_weight    188.228 
_chem_comp.id                NMM 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     L-NMMA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NH2 NMM sing 237 n n 
CAA HAA1 NMM sing 238 n n 
CAA HAA2 NMM sing 239 n n 
CAA HAA3 NMM sing 240 n n 
NH2 CZ NMM sing 241 n n 
NH2 HH2 NMM sing 242 n n 
CZ NH1 NMM doub 243 n n 
CZ NE NMM sing 244 n n 
NH1 HH1 NMM sing 245 n n 
NE CD NMM sing 246 n n 
NE HE NMM sing 247 n n 
CD CG NMM sing 248 n n 
CD HD3 NMM sing 249 n n 
CD HD2 NMM sing 250 n n 
CG CB NMM sing 251 n n 
CG HG3 NMM sing 252 n n 
CG HG2 NMM sing 253 n n 
CB CA NMM sing 254 n n 
CB HB3 NMM sing 255 n n 
CB HB2 NMM sing 256 n n 
CA C NMM sing 257 n n 
CA N NMM sing 258 n n 
CA HA NMM sing 259 n n 
C O NMM doub 260 n n 
C OXT NMM sing 261 n n 
OXT HXT NMM sing 262 n n 
N H NMM sing 263 n n 
N H2 NMM sing 264 n n 
#
_atom_sites.entry_id                     6AVS 
_atom_sites.fract_transf_matrix[1][1]    0.020127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01537 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 NMM A 1 502 1 NMM 2MR . 
D 4 HOH A 1 601 601 HOH HOH . 
D 4 HOH A 2 602 602 HOH HOH . 
D 4 HOH A 3 603 603 HOH HOH . 
D 4 HOH A 4 604 604 HOH HOH . 
D 4 HOH A 5 605 605 HOH HOH . 
D 4 HOH A 6 606 606 HOH HOH . 
D 4 HOH A 7 607 607 HOH HOH . 
D 4 HOH A 8 608 608 HOH HOH . 
D 4 HOH A 9 609 609 HOH HOH . 
D 4 HOH A 10 610 610 HOH HOH . 
D 4 HOH A 11 611 611 HOH HOH . 
D 4 HOH A 12 612 612 HOH HOH . 
D 4 HOH A 13 613 613 HOH HOH . 
D 4 HOH A 14 614 614 HOH HOH . 
D 4 HOH A 15 615 615 HOH HOH . 
D 4 HOH A 16 616 616 HOH HOH . 
D 4 HOH A 17 617 617 HOH HOH . 
D 4 HOH A 18 618 618 HOH HOH . 
D 4 HOH A 19 619 619 HOH HOH . 
D 4 HOH A 20 620 620 HOH HOH . 
D 4 HOH A 21 621 621 HOH HOH . 
D 4 HOH A 22 622 622 HOH HOH . 
D 4 HOH A 23 623 623 HOH HOH . 
D 4 HOH A 24 624 624 HOH HOH . 
D 4 HOH A 25 625 625 HOH HOH . 
D 4 HOH A 26 626 626 HOH HOH . 
D 4 HOH A 27 627 627 HOH HOH . 
D 4 HOH A 28 628 628 HOH HOH . 
D 4 HOH A 29 629 629 HOH HOH . 
D 4 HOH A 30 630 630 HOH HOH . 
D 4 HOH A 31 631 631 HOH HOH . 
D 4 HOH A 32 632 632 HOH HOH . 
D 4 HOH A 33 633 633 HOH HOH . 
D 4 HOH A 34 634 634 HOH HOH . 
D 4 HOH A 35 635 635 HOH HOH . 
D 4 HOH A 36 636 636 HOH HOH . 
D 4 HOH A 37 637 637 HOH HOH . 
D 4 HOH A 38 638 638 HOH HOH . 
D 4 HOH A 39 639 639 HOH HOH . 
D 4 HOH A 40 640 640 HOH HOH . 
D 4 HOH A 41 641 641 HOH HOH . 
D 4 HOH A 42 642 642 HOH HOH . 
D 4 HOH A 43 643 643 HOH HOH . 
D 4 HOH A 44 644 644 HOH HOH . 
D 4 HOH A 45 645 645 HOH HOH . 
D 4 HOH A 46 646 646 HOH HOH . 
D 4 HOH A 47 647 647 HOH HOH . 
D 4 HOH A 48 648 648 HOH HOH . 
D 4 HOH A 49 649 649 HOH HOH . 
D 4 HOH A 50 650 650 HOH HOH . 
D 4 HOH A 51 651 651 HOH HOH . 
D 4 HOH A 52 652 652 HOH HOH . 
D 4 HOH A 53 653 653 HOH HOH . 
D 4 HOH A 54 654 654 HOH HOH . 
D 4 HOH A 55 655 655 HOH HOH . 
D 4 HOH A 56 656 656 HOH HOH . 
D 4 HOH A 57 657 657 HOH HOH . 
D 4 HOH A 58 658 658 HOH HOH . 
D 4 HOH A 59 659 659 HOH HOH . 
D 4 HOH A 60 660 660 HOH HOH . 
D 4 HOH A 61 661 661 HOH HOH . 
D 4 HOH A 62 662 662 HOH HOH . 
D 4 HOH A 63 663 663 HOH HOH . 
D 4 HOH A 64 664 664 HOH HOH . 
D 4 HOH A 65 665 665 HOH HOH . 
D 4 HOH A 66 666 666 HOH HOH . 
D 4 HOH A 67 667 667 HOH HOH . 
D 4 HOH A 68 668 668 HOH HOH . 
D 4 HOH A 69 669 669 HOH HOH . 
D 4 HOH A 70 670 670 HOH HOH . 
D 4 HOH A 71 671 671 HOH HOH . 
D 4 HOH A 72 672 672 HOH HOH . 
D 4 HOH A 73 673 673 HOH HOH . 
D 4 HOH A 74 674 101 HOH HOH . 
D 4 HOH A 75 675 674 HOH HOH . 
D 4 HOH A 76 676 675 HOH HOH . 
D 4 HOH A 77 677 676 HOH HOH . 
D 4 HOH A 78 678 677 HOH HOH . 
D 4 HOH A 79 679 678 HOH HOH . 
D 4 HOH A 80 680 679 HOH HOH . 
D 4 HOH A 81 681 680 HOH HOH . 
D 4 HOH A 82 682 681 HOH HOH . 
D 4 HOH A 83 683 682 HOH HOH . 
D 4 HOH A 84 684 683 HOH HOH . 
D 4 HOH A 85 685 102 HOH HOH . 
D 4 HOH A 86 686 684 HOH HOH . 
D 4 HOH A 87 687 685 HOH HOH . 
D 4 HOH A 88 688 686 HOH HOH . 
D 4 HOH A 89 689 687 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA NMM . . . C 3 4.74 72.652 25.252 1 43.8 ? CAA NMM 502 A 1 
HETATM 2 N NH2 NMM . . . C 3 3.6 73.583 25.263 1 47.22 ? NH2 NMM 502 A 1 
HETATM 3 C CZ NMM . . . C 3 3.971 74.824 24.557 1 46.36 ? CZ NMM 502 A 1 
HETATM 4 N NH1 NMM . . . C 3 2.798 75.346 23.831 1 43.4 ? NH1 NMM 502 A 1 
HETATM 5 N NE NMM . . . C 3 4.432 75.827 25.535 1 44.26 ? NE NMM 502 A 1 
HETATM 6 C CD NMM . . . C 3 5.705 76.409 25.079 1 44.95 ? CD NMM 502 A 1 
HETATM 7 C CG NMM . . . C 3 6.835 75.418 25.331 1 44.06 ? CG NMM 502 A 1 
HETATM 8 C CB NMM . . . C 3 6.826 74.934 26.776 1 44.36 ? CB NMM 502 A 1 
HETATM 9 C CA NMM . . . C 3 7.568 73.609 26.914 1 44.04 ? CA NMM 502 A 1 
HETATM 10 C C NMM . . . C 3 9.037 73.831 26.702 1 50.03 ? C NMM 502 A 1 
HETATM 11 O O NMM . . . C 3 9.399 74.78 25.973 1 43.59 ? O NMM 502 A 1 
HETATM 12 O OXT NMM . . . C 3 9.845 73.059 27.262 1 48.75 ? OXT NMM 502 A 1 
HETATM 13 N N NMM . . . C 3 7.338 73.056 28.262 1 48.43 ? N NMM 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           13 
#