data_6AW7 # _model_server_result.job_id tQ0iNLZymoYn6IerYM4SlQ _model_server_result.datetime_utc '2025-01-15 14:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6AW7 # _exptl.entry_id 6AW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AW7 _cell.length_a 61.353 _cell.length_b 86.671 _cell.length_c 104.116 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 140 A ASP 140 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A OD2 ASP 140 A ASP 140 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc3 A OD2 ASP 168 A ASP 168 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A OD1 ASN 169 A ASN 169 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 C CA CA . A CA 301 1_555 G O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 C CA CA . A CA 301 1_555 G O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 C CA CA . A CA 301 1_555 G O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc8 B OD1 ASP 140 B ASP 140 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 B OD2 ASP 140 B ASP 140 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc10 B OD2 ASP 168 B ASP 168 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc11 B OD1 ASN 169 B ASN 169 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc12 E CA CA . B CA 301 1_555 H O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc13 E CA CA . B CA 301 1_555 H O HOH . B HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc14 E CA CA . B CA 301 1_555 H O HOH . B HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6AW7 _atom_sites.fract_transf_matrix[1][1] 0.016299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 1 CA CA . D 3 SAH A 1 302 1 SAH SAH . E 2 CA B 1 301 2 CA CA . F 3 SAH B 1 302 2 SAH SAH . G 4 HOH A 1 401 157 HOH HOH . G 4 HOH A 2 402 132 HOH HOH . G 4 HOH A 3 403 72 HOH HOH . G 4 HOH A 4 404 35 HOH HOH . G 4 HOH A 5 405 60 HOH HOH . G 4 HOH A 6 406 82 HOH HOH . G 4 HOH A 7 407 162 HOH HOH . G 4 HOH A 8 408 101 HOH HOH . G 4 HOH A 9 409 83 HOH HOH . G 4 HOH A 10 410 49 HOH HOH . G 4 HOH A 11 411 142 HOH HOH . G 4 HOH A 12 412 57 HOH HOH . G 4 HOH A 13 413 5 HOH HOH . G 4 HOH A 14 414 74 HOH HOH . G 4 HOH A 15 415 17 HOH HOH . G 4 HOH A 16 416 25 HOH HOH . G 4 HOH A 17 417 159 HOH HOH . G 4 HOH A 18 418 126 HOH HOH . G 4 HOH A 19 419 125 HOH HOH . G 4 HOH A 20 420 99 HOH HOH . G 4 HOH A 21 421 88 HOH HOH . G 4 HOH A 22 422 92 HOH HOH . G 4 HOH A 23 423 73 HOH HOH . G 4 HOH A 24 424 104 HOH HOH . G 4 HOH A 25 425 87 HOH HOH . G 4 HOH A 26 426 51 HOH HOH . G 4 HOH A 27 427 138 HOH HOH . G 4 HOH A 28 428 143 HOH HOH . G 4 HOH A 29 429 68 HOH HOH . G 4 HOH A 30 430 22 HOH HOH . G 4 HOH A 31 431 67 HOH HOH . G 4 HOH A 32 432 16 HOH HOH . G 4 HOH A 33 433 58 HOH HOH . G 4 HOH A 34 434 91 HOH HOH . G 4 HOH A 35 435 36 HOH HOH . G 4 HOH A 36 436 112 HOH HOH . G 4 HOH A 37 437 4 HOH HOH . G 4 HOH A 38 438 117 HOH HOH . G 4 HOH A 39 439 156 HOH HOH . G 4 HOH A 40 440 124 HOH HOH . G 4 HOH A 41 441 28 HOH HOH . G 4 HOH A 42 442 131 HOH HOH . G 4 HOH A 43 443 141 HOH HOH . G 4 HOH A 44 444 46 HOH HOH . G 4 HOH A 45 445 31 HOH HOH . G 4 HOH A 46 446 105 HOH HOH . G 4 HOH A 47 447 163 HOH HOH . G 4 HOH A 48 448 113 HOH HOH . G 4 HOH A 49 449 14 HOH HOH . G 4 HOH A 50 450 150 HOH HOH . G 4 HOH A 51 451 76 HOH HOH . G 4 HOH A 52 452 108 HOH HOH . G 4 HOH A 53 453 122 HOH HOH . G 4 HOH A 54 454 55 HOH HOH . G 4 HOH A 55 455 110 HOH HOH . G 4 HOH A 56 456 111 HOH HOH . G 4 HOH A 57 457 128 HOH HOH . G 4 HOH A 58 458 103 HOH HOH . G 4 HOH A 59 459 148 HOH HOH . G 4 HOH A 60 460 61 HOH HOH . G 4 HOH A 61 461 7 HOH HOH . G 4 HOH A 62 462 94 HOH HOH . G 4 HOH A 63 463 6 HOH HOH . G 4 HOH A 64 464 118 HOH HOH . G 4 HOH A 65 465 95 HOH HOH . G 4 HOH A 66 466 85 HOH HOH . G 4 HOH A 67 467 78 HOH HOH . G 4 HOH A 68 468 32 HOH HOH . G 4 HOH A 69 469 42 HOH HOH . G 4 HOH A 70 470 11 HOH HOH . G 4 HOH A 71 471 53 HOH HOH . G 4 HOH A 72 472 54 HOH HOH . G 4 HOH A 73 473 145 HOH HOH . G 4 HOH A 74 474 107 HOH HOH . G 4 HOH A 75 475 151 HOH HOH . G 4 HOH A 76 476 84 HOH HOH . G 4 HOH A 77 477 149 HOH HOH . G 4 HOH A 78 478 134 HOH HOH . G 4 HOH A 79 479 100 HOH HOH . G 4 HOH A 80 480 164 HOH HOH . G 4 HOH A 81 481 129 HOH HOH . H 4 HOH B 1 401 155 HOH HOH . H 4 HOH B 2 402 158 HOH HOH . H 4 HOH B 3 403 127 HOH HOH . H 4 HOH B 4 404 50 HOH HOH . H 4 HOH B 5 405 119 HOH HOH . H 4 HOH B 6 406 93 HOH HOH . H 4 HOH B 7 407 140 HOH HOH . H 4 HOH B 8 408 40 HOH HOH . H 4 HOH B 9 409 38 HOH HOH . H 4 HOH B 10 410 106 HOH HOH . H 4 HOH B 11 411 9 HOH HOH . H 4 HOH B 12 412 44 HOH HOH . H 4 HOH B 13 413 97 HOH HOH . H 4 HOH B 14 414 23 HOH HOH . H 4 HOH B 15 415 89 HOH HOH . H 4 HOH B 16 416 18 HOH HOH . H 4 HOH B 17 417 15 HOH HOH . H 4 HOH B 18 418 139 HOH HOH . H 4 HOH B 19 419 37 HOH HOH . H 4 HOH B 20 420 146 HOH HOH . H 4 HOH B 21 421 33 HOH HOH . H 4 HOH B 22 422 96 HOH HOH . H 4 HOH B 23 423 62 HOH HOH . H 4 HOH B 24 424 34 HOH HOH . H 4 HOH B 25 425 20 HOH HOH . H 4 HOH B 26 426 64 HOH HOH . H 4 HOH B 27 427 90 HOH HOH . H 4 HOH B 28 428 81 HOH HOH . H 4 HOH B 29 429 144 HOH HOH . H 4 HOH B 30 430 63 HOH HOH . H 4 HOH B 31 431 98 HOH HOH . H 4 HOH B 32 432 121 HOH HOH . H 4 HOH B 33 433 48 HOH HOH . H 4 HOH B 34 434 1 HOH HOH . H 4 HOH B 35 435 120 HOH HOH . H 4 HOH B 36 436 8 HOH HOH . H 4 HOH B 37 437 66 HOH HOH . H 4 HOH B 38 438 47 HOH HOH . H 4 HOH B 39 439 123 HOH HOH . H 4 HOH B 40 440 52 HOH HOH . H 4 HOH B 41 441 109 HOH HOH . H 4 HOH B 42 442 161 HOH HOH . H 4 HOH B 43 443 24 HOH HOH . H 4 HOH B 44 444 29 HOH HOH . H 4 HOH B 45 445 27 HOH HOH . H 4 HOH B 46 446 26 HOH HOH . H 4 HOH B 47 447 19 HOH HOH . H 4 HOH B 48 448 56 HOH HOH . H 4 HOH B 49 449 147 HOH HOH . H 4 HOH B 50 450 86 HOH HOH . H 4 HOH B 51 451 102 HOH HOH . H 4 HOH B 52 452 136 HOH HOH . H 4 HOH B 53 453 43 HOH HOH . H 4 HOH B 54 454 45 HOH HOH . H 4 HOH B 55 455 71 HOH HOH . H 4 HOH B 56 456 115 HOH HOH . H 4 HOH B 57 457 77 HOH HOH . H 4 HOH B 58 458 10 HOH HOH . H 4 HOH B 59 459 69 HOH HOH . H 4 HOH B 60 460 65 HOH HOH . H 4 HOH B 61 461 137 HOH HOH . H 4 HOH B 62 462 12 HOH HOH . H 4 HOH B 63 463 3 HOH HOH . H 4 HOH B 64 464 135 HOH HOH . H 4 HOH B 65 465 70 HOH HOH . H 4 HOH B 66 466 2 HOH HOH . H 4 HOH B 67 467 13 HOH HOH . H 4 HOH B 68 468 75 HOH HOH . H 4 HOH B 69 469 116 HOH HOH . H 4 HOH B 70 470 21 HOH HOH . H 4 HOH B 71 471 39 HOH HOH . H 4 HOH B 72 472 30 HOH HOH . H 4 HOH B 73 473 80 HOH HOH . H 4 HOH B 74 474 41 HOH HOH . H 4 HOH B 75 475 59 HOH HOH . H 4 HOH B 76 476 79 HOH HOH . H 4 HOH B 77 477 133 HOH HOH . H 4 HOH B 78 478 153 HOH HOH . H 4 HOH B 79 479 154 HOH HOH . H 4 HOH B 80 480 160 HOH HOH . H 4 HOH B 81 481 130 HOH HOH . H 4 HOH B 82 482 165 HOH HOH . H 4 HOH B 83 483 166 HOH HOH . H 4 HOH B 84 484 152 HOH HOH . H 4 HOH B 85 485 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . F 3 0.974 7.842 21.445 1 27.82 ? N SAH 302 B 1 HETATM 2 C CA SAH . . . F 3 1.103 8.966 22.371 1 30.64 ? CA SAH 302 B 1 HETATM 3 C CB SAH . . . F 3 1.764 8.527 23.673 1 23.27 ? CB SAH 302 B 1 HETATM 4 C CG SAH . . . F 3 1.168 7.241 24.246 1 23.47 ? CG SAH 302 B 1 HETATM 5 S SD SAH . . . F 3 1.717 7.007 25.949 1 26.38 ? SD SAH 302 B 1 HETATM 6 C C SAH . . . F 3 1.907 10.106 21.75 1 32.6 ? C SAH 302 B 1 HETATM 7 O O SAH . . . F 3 3.048 9.92 21.316 1 30.44 ? O SAH 302 B 1 HETATM 8 O OXT SAH . . . F 3 1.437 11.244 21.686 1 28.2 ? OXT SAH 302 B 1 HETATM 9 C C5' SAH . . . F 3 0.893 5.414 26.21 1 22.51 ? C5' SAH 302 B 1 HETATM 10 C C4' SAH . . . F 3 -0.6 5.555 26.496 1 32.26 ? C4' SAH 302 B 1 HETATM 11 O O4' SAH . . . F 3 -1.242 4.305 26.387 1 22.09 ? O4' SAH 302 B 1 HETATM 12 C C3' SAH . . . F 3 -0.927 6.08 27.881 1 31.66 ? C3' SAH 302 B 1 HETATM 13 O O3' SAH . . . F 3 -1.712 7.238 27.711 1 28.61 ? O3' SAH 302 B 1 HETATM 14 C C2' SAH . . . F 3 -1.707 4.969 28.566 1 33.72 ? C2' SAH 302 B 1 HETATM 15 O O2' SAH . . . F 3 -2.735 5.452 29.398 1 24.84 ? O2' SAH 302 B 1 HETATM 16 C C1' SAH . . . F 3 -2.256 4.216 27.37 1 24.38 ? C1' SAH 302 B 1 HETATM 17 N N9 SAH . . . F 3 -2.473 2.779 27.525 1 32.29 ? N9 SAH 302 B 1 HETATM 18 C C8 SAH . . . F 3 -1.684 1.883 28.175 1 32.56 ? C8 SAH 302 B 1 HETATM 19 N N7 SAH . . . F 3 -2.229 0.649 28.035 1 34.45 ? N7 SAH 302 B 1 HETATM 20 C C5 SAH . . . F 3 -3.345 0.757 27.279 1 32.06 ? C5 SAH 302 B 1 HETATM 21 C C6 SAH . . . F 3 -4.279 -0.153 26.806 1 27.27 ? C6 SAH 302 B 1 HETATM 22 N N6 SAH . . . F 3 -4.211 -1.45 27.081 1 30.84 ? N6 SAH 302 B 1 HETATM 23 N N1 SAH . . . F 3 -5.315 0.307 26.043 1 26.07 ? N1 SAH 302 B 1 HETATM 24 C C2 SAH . . . F 3 -5.445 1.63 25.738 1 28.21 ? C2 SAH 302 B 1 HETATM 25 N N3 SAH . . . F 3 -4.525 2.529 26.197 1 24.69 ? N3 SAH 302 B 1 HETATM 26 C C4 SAH . . . F 3 -3.498 2.096 26.952 1 27.25 ? C4 SAH 302 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #